RNA–Protein interactions for RNA: ENST00000599575.5

SHKBP1-219, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 810 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-219ENST00000599575 LRRC61Q9BV99 259 aa16.36■□□□□ 0.21
SHKBP1-219ENST00000599575 VPS37BQ9H9H4 285 aa16.36■□□□□ 0.21
SHKBP1-219ENST00000599575 EVA1BQ9NVM1 165 aa16.36■□□□□ 0.21
SHKBP1-219ENST00000599575 ZC3H7BQ9UGR2 993 aaKnown RBP16.36■□□□□ 0.21
SHKBP1-219ENST00000599575 DMGDHQ9UI17 866 aaKnown RBP16.36■□□□□ 0.21
SHKBP1-219ENST00000599575 MOSPD1Q9UJG1 213 aa16.36■□□□□ 0.21
SHKBP1-219ENST00000599575 CDV3Q9UKY7 258 aaKnown RBP16.36■□□□□ 0.21
SHKBP1-219ENST00000599575 PNMA8BQ9ULN7 279 aaPredicted RBP16.36■□□□□ 0.21
SHKBP1-219ENST00000599575 KNL1Q8NG31 2342 aa16.35■□□□□ 0.21
SHKBP1-219ENST00000599575 DOCK9Q9BZ29 2069 aa16.35■□□□□ 0.21
SHKBP1-219ENST00000599575 CCL22O00626 93 aa16.35■□□□□ 0.21
SHKBP1-219ENST00000599575 FUCA1P04066 466 aa16.35■□□□□ 0.21
SHKBP1-219ENST00000599575 GSTA2P09210 222 aa16.35■□□□□ 0.21
SHKBP1-219ENST00000599575 CD59P13987 128 aa16.35■□□□□ 0.21
SHKBP1-219ENST00000599575 ATP1B2P14415 290 aaPredicted RBP16.35■□□□□ 0.21
SHKBP1-219ENST00000599575 ZNF7P17097 686 aaPredicted RBP16.35■□□□□ 0.21
SHKBP1-219ENST00000599575 OGNP20774 298 aaKnown RBP16.35■□□□□ 0.21
SHKBP1-219ENST00000599575 CSRP1P21291 193 aaKnown RBP16.35■□□□□ 0.21
SHKBP1-219ENST00000599575 ELK3P41970 407 aa16.35■□□□□ 0.21
SHKBP1-219ENST00000599575 GNPDA1P46926 289 aa16.35■□□□□ 0.21
SHKBP1-219ENST00000599575 POLD2P49005 469 aa16.35■□□□□ 0.21
SHKBP1-219ENST00000599575 PDIA2Q13087 525 aaKnown RBP16.35■□□□□ 0.21
SHKBP1-219ENST00000599575 CRYMQ14894 314 aa16.35■□□□□ 0.21
SHKBP1-219ENST00000599575 BCL7AQ4VC05 210 aa16.35■□□□□ 0.21
SHKBP1-219ENST00000599575 MSS51Q4VC12 460 aa16.35■□□□□ 0.21
SHKBP1-219ENST00000599575 ZNF542PQ5EBM4 170 aa16.35■□□□□ 0.21
SHKBP1-219ENST00000599575 NEPROQ6NW34 567 aa16.35■□□□□ 0.21
SHKBP1-219ENST00000599575 ZNF449Q6P9G9 518 aa16.35■□□□□ 0.21
SHKBP1-219ENST00000599575 CYS1Q717R9 158 aa16.35■□□□□ 0.21
SHKBP1-219ENST00000599575 PIANPQ8IYJ0 282 aa16.35■□□□□ 0.21
SHKBP1-219ENST00000599575 AGGF1Q8N302 714 aaeCLIP16.35■□□□□ 0.217e-20■■■■□ 22.6
SHKBP1-219ENST00000599575 SLC25A45Q8N413 288 aa16.35■□□□□ 0.21
SHKBP1-219ENST00000599575 FAM181AQ8N9Y4 354 aa16.35■□□□□ 0.21
SHKBP1-219ENST00000599575 OR4C6Q8NH72 309 aa16.35■□□□□ 0.21
SHKBP1-219ENST00000599575 LMX1AQ8TE12 382 aa16.35■□□□□ 0.21
SHKBP1-219ENST00000599575 LINC00615Q96LM1 132 aaPredicted RBP16.35■□□□□ 0.21
SHKBP1-219ENST00000599575 CDC6Q99741 560 aa16.35■□□□□ 0.21
SHKBP1-219ENST00000599575 FAM167BQ9BTA0 163 aa16.35■□□□□ 0.21
SHKBP1-219ENST00000599575 SLC32A1Q9H598 525 aa16.35■□□□□ 0.21
SHKBP1-219ENST00000599575 MRPL40Q9NQ50 206 aaKnown RBP16.35■□□□□ 0.21
SHKBP1-219ENST00000599575 ZDHHC18Q9NUE0 388 aa16.35■□□□□ 0.21
SHKBP1-219ENST00000599575 ZNHIT2Q9UHR6 403 aa16.35■□□□□ 0.21
SHKBP1-219ENST00000599575 SCN8AQ9UQD0 1980 aa16.35■□□□□ 0.21
SHKBP1-219ENST00000599575 RALGAPA1Q6GYQ0 2036 aa16.35■□□□□ 0.21
SHKBP1-219ENST00000599575 ZNF106Q9H2Y7 1883 aaKnown RBP16.34■□□□□ 0.21
SHKBP1-219ENST00000599575 CCDC78A2IDD5 438 aa16.34■□□□□ 0.21
SHKBP1-219ENST00000599575 ANXA6P08133 673 aa16.34■□□□□ 0.21
SHKBP1-219ENST00000599575 ARNTP27540 789 aa16.34■□□□□ 0.21
SHKBP1-219ENST00000599575 PMLP29590 882 aa16.34■□□□□ 0.21
SHKBP1-219ENST00000599575 ADARP55265 1226 aaKnown RBP16.34■□□□□ 0.21
SHKBP1-219ENST00000599575 BNIP3Q12983 259 aa16.34■□□□□ 0.21
SHKBP1-219ENST00000599575 THOC5Q13769 683 aaKnown RBP16.34■□□□□ 0.21
SHKBP1-219ENST00000599575 DBN1Q16643 649 aa16.34■□□□□ 0.21
SHKBP1-219ENST00000599575 UAP1L1Q3KQV9 507 aa16.34■□□□□ 0.21
SHKBP1-219ENST00000599575 STEAP4Q687X5 459 aa16.34■□□□□ 0.21
SHKBP1-219ENST00000599575 PSAPL1Q6NUJ1 521 aa16.34■□□□□ 0.21
SHKBP1-219ENST00000599575 ZCCHC8Q6NZY4 707 aaKnown RBP16.34■□□□□ 0.21
SHKBP1-219ENST00000599575 ZDHHC24Q6UX98 284 aa16.34■□□□□ 0.21
SHKBP1-219ENST00000599575 PIP4P1Q86T03 277 aa16.34■□□□□ 0.21
SHKBP1-219ENST00000599575 RELL1Q8IUW5 271 aa16.34■□□□□ 0.21
SHKBP1-219ENST00000599575 RASGEF1AQ8N9B8 481 aa16.34■□□□□ 0.21
SHKBP1-219ENST00000599575 OR2I1PQ8NGU4 316 aa16.34■□□□□ 0.21
SHKBP1-219ENST00000599575 PYROXD1Q8WU10 500 aa16.34■□□□□ 0.21
SHKBP1-219ENST00000599575 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP16.34■□□□□ 0.21
SHKBP1-219ENST00000599575 GLMNQ92990 594 aa16.34■□□□□ 0.21
SHKBP1-219ENST00000599575 RTKNQ9BST9 563 aa16.34■□□□□ 0.21
SHKBP1-219ENST00000599575 TMEM168Q9H0V1 697 aa16.34■□□□□ 0.21
SHKBP1-219ENST00000599575 INTS10Q9NVR2 710 aaKnown RBP16.34■□□□□ 0.21
SHKBP1-219ENST00000599575 DOLKQ9UPQ8 538 aa16.34■□□□□ 0.21
SHKBP1-219ENST00000599575 GPSM3Q9Y4H4 160 aa16.34■□□□□ 0.21
SHKBP1-219ENST00000599575 C17orf113A0A1B0GUU1 675 aa16.33■□□□□ 0.2
SHKBP1-219ENST00000599575 TM4SF5O14894 197 aa16.33■□□□□ 0.2
SHKBP1-219ENST00000599575 GPR39O43194 453 aa16.33■□□□□ 0.2
SHKBP1-219ENST00000599575 SPAG6O75602 509 aa16.33■□□□□ 0.2
SHKBP1-219ENST00000599575 SLU7O95391 586 aaKnown RBP16.33■□□□□ 0.2
SHKBP1-219ENST00000599575 SLC2A4P14672 509 aa16.33■□□□□ 0.2
SHKBP1-219ENST00000599575 CTBSQ01459 385 aa16.33■□□□□ 0.2
SHKBP1-219ENST00000599575 DMPKQ09013 629 aa16.33■□□□□ 0.2
SHKBP1-219ENST00000599575 TYSND1Q2T9J0 566 aa16.33■□□□□ 0.2
SHKBP1-219ENST00000599575 KHDC1Q4VXA5 237 aaKnown RBP16.33■□□□□ 0.2
SHKBP1-219ENST00000599575 KIAA0408Q6ZU52 694 aa16.33■□□□□ 0.2
SHKBP1-219ENST00000599575 MARK2Q7KZI7 788 aaKnown RBP16.33■□□□□ 0.2
SHKBP1-219ENST00000599575 TRAPPC5Q8IUR0 188 aa16.33■□□□□ 0.2
SHKBP1-219ENST00000599575 NAXDQ8IW45 347 aa16.33■□□□□ 0.2
SHKBP1-219ENST00000599575 ZBED8Q8IZ13 594 aa16.33■□□□□ 0.2
SHKBP1-219ENST00000599575 FBXO36Q8NEA4 188 aa16.33■□□□□ 0.2
SHKBP1-219ENST00000599575 FCRL3Q96P31 734 aaPredicted RBP16.33■□□□□ 0.2
SHKBP1-219ENST00000599575 TSSK1BQ9BXA7 367 aa16.33■□□□□ 0.2
SHKBP1-219ENST00000599575 CLPBQ9H078 707 aa16.33■□□□□ 0.2
SHKBP1-219ENST00000599575 TCEAL2Q9H3H9 227 aaPredicted RBP16.33■□□□□ 0.2
SHKBP1-219ENST00000599575 C20orf96Q9NUD7 363 aaPredicted RBP16.33■□□□□ 0.2
SHKBP1-219ENST00000599575 ESYT3A0FGR9 886 aa16.32■□□□□ 0.2
SHKBP1-219ENST00000599575 OR51F1A6NGY5 319 aa16.32■□□□□ 0.2
SHKBP1-219ENST00000599575 H3BMM5 538 aa16.32■□□□□ 0.2
SHKBP1-219ENST00000599575 PRMT5O14744 637 aaPredicted RBP16.32■□□□□ 0.2
SHKBP1-219ENST00000599575 YY2O15391 372 aa16.32■□□□□ 0.2
SHKBP1-219ENST00000599575 SDC3O75056 442 aa16.32■□□□□ 0.2
SHKBP1-219ENST00000599575 MTX2O75431 263 aa16.32■□□□□ 0.2
SHKBP1-219ENST00000599575 NDUFS3O75489 264 aa16.32■□□□□ 0.2
SHKBP1-219ENST00000599575 OR56A5P0C7T3 313 aa16.32■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms