RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 SMAD9O15198 467 aaKnown RBP6.06□□□□□ -1.44
SS18-214ENST00000580003 AHRP35869 848 aa6.06□□□□□ -1.44
SS18-214ENST00000580003 MLLT10P55197 1068 aa6.06□□□□□ -1.44
SS18-214ENST00000580003 DCAF7P61962 342 aa6.06□□□□□ -1.44
SS18-214ENST00000580003 JADE1Q6IE81 842 aa6.06□□□□□ -1.44
SS18-214ENST00000580003 CIARTQ8N365 385 aaPredicted RBP6.06□□□□□ -1.44
SS18-214ENST00000580003 RASGEF1CQ8N431 466 aa6.06□□□□□ -1.44
SS18-214ENST00000580003 RDM1Q8NG50 284 aa6.06□□□□□ -1.44
SS18-214ENST00000580003 TRPC4APQ8TEL6 797 aa6.06□□□□□ -1.44
SS18-214ENST00000580003 UPF2Q9HAU5 1272 aaKnown RBP6.06□□□□□ -1.44
SS18-214ENST00000580003 SETD4Q9NVD3 440 aa6.06□□□□□ -1.44
SS18-214ENST00000580003 A0A1W2PP11 408 aa6.05□□□□□ -1.44
SS18-214ENST00000580003 FRMD3A2A2Y4 597 aa6.05□□□□□ -1.44
SS18-214ENST00000580003 A8MZ25 164 aa6.05□□□□□ -1.44
SS18-214ENST00000580003 SYNGR3O43761 229 aa6.05□□□□□ -1.44
SS18-214ENST00000580003 BAIAP3O94812 1187 aa6.05□□□□□ -1.44
SS18-214ENST00000580003 PRSS1P07477 247 aa6.05□□□□□ -1.44
SS18-214ENST00000580003 MSH2P43246 934 aa6.05□□□□□ -1.44
SS18-214ENST00000580003 ARCN1P48444 511 aaKnown RBP6.05□□□□□ -1.44
SS18-214ENST00000580003 GPR143P51810 404 aa6.05□□□□□ -1.44
SS18-214ENST00000580003 DMP1Q13316 513 aaPredicted RBP6.05□□□□□ -1.44
SS18-214ENST00000580003 ACVR2BQ13705 512 aa6.05□□□□□ -1.44
SS18-214ENST00000580003 WDTC1Q8N5D0 677 aa6.05□□□□□ -1.44
SS18-214ENST00000580003 SLC5A8Q8N695 610 aa6.05□□□□□ -1.44
SS18-214ENST00000580003 HJURPQ8NCD3 748 aaPredicted RBP6.05□□□□□ -1.44
SS18-214ENST00000580003 GSDMBQ8TAX9 411 aa6.05□□□□□ -1.44
SS18-214ENST00000580003 FTOQ9C0B1 505 aaKnown RBP eCLIP6.05□□□□□ -1.44
SS18-214ENST00000580003 PLK3Q9H4B4 646 aa6.05□□□□□ -1.44
SS18-214ENST00000580003 SEPT11Q9NVA2 429 aaKnown RBP6.05□□□□□ -1.44
SS18-214ENST00000580003 DBNLQ9UJU6 430 aaKnown RBP6.05□□□□□ -1.44
SS18-214ENST00000580003 ITIH6Q6UXX5 1313 aa6.04□□□□□ -1.44
SS18-214ENST00000580003 IGLV5-45A0A087WSX0 123 aa6.04□□□□□ -1.44
SS18-214ENST00000580003 FAM72CH0Y354 149 aa6.04□□□□□ -1.44
SS18-214ENST00000580003 TMEM178BH3BS89 294 aa6.04□□□□□ -1.44
SS18-214ENST00000580003 TMCC2O75069 709 aa6.04□□□□□ -1.44
SS18-214ENST00000580003 IGHV4-39P01824 125 aa6.04□□□□□ -1.44
SS18-214ENST00000580003 SRPRAP08240 638 aaKnown RBP6.04□□□□□ -1.44
SS18-214ENST00000580003 ACADLP28330 430 aa6.04□□□□□ -1.44
SS18-214ENST00000580003 CTSCP53634 463 aa6.04□□□□□ -1.44
SS18-214ENST00000580003 RPL24P83731 157 aaKnown RBP6.04□□□□□ -1.44
SS18-214ENST00000580003 RUNX1T1Q06455 604 aa6.04□□□□□ -1.44
SS18-214ENST00000580003 IKQ13123 557 aaPredicted RBP6.04□□□□□ -1.44
SS18-214ENST00000580003 KRTAP24-1Q3LI83 254 aa6.04□□□□□ -1.44
SS18-214ENST00000580003 OTUD3Q5T2D3 398 aaPredicted RBP6.04□□□□□ -1.44
SS18-214ENST00000580003 FAM72AQ5TYM5 149 aa6.04□□□□□ -1.44
SS18-214ENST00000580003 PMS2CLQ68D20 193 aa6.04□□□□□ -1.44
SS18-214ENST00000580003 FAM72DQ6L9T8 149 aa6.04□□□□□ -1.44
SS18-214ENST00000580003 TBC1D1Q86TI0 1168 aaPredicted RBP6.04□□□□□ -1.44
SS18-214ENST00000580003 FAM72BQ86X60 149 aa6.04□□□□□ -1.44
SS18-214ENST00000580003 GCSAMQ8N6F7 178 aa6.04□□□□□ -1.44
SS18-214ENST00000580003 SLC38A9Q8NBW4 561 aa6.04□□□□□ -1.44
SS18-214ENST00000580003 SKA1Q96BD8 255 aa6.04□□□□□ -1.44
SS18-214ENST00000580003 PGAM5Q96HS1 289 aa6.04□□□□□ -1.44
SS18-214ENST00000580003 OR2A14Q96R47 310 aa6.04□□□□□ -1.44
SS18-214ENST00000580003 TMEM184BQ9Y519 407 aaPredicted RBP6.04□□□□□ -1.44
SS18-214ENST00000580003 PRAG1Q86YV5 1406 aa6.04□□□□□ -1.44
SS18-214ENST00000580003 ARHGEF40Q8TER5 1519 aa6.04□□□□□ -1.44
SS18-214ENST00000580003 CTAGE9A4FU28 777 aa6.03□□□□□ -1.44
SS18-214ENST00000580003 PRR23AA6NEV1 266 aa6.03□□□□□ -1.44
SS18-214ENST00000580003 ZBTB43O43298 467 aa6.03□□□□□ -1.44
SS18-214ENST00000580003 CTAGE8P0CG41 777 aa6.03□□□□□ -1.44
SS18-214ENST00000580003 GM2AP17900 193 aa6.03□□□□□ -1.44
SS18-214ENST00000580003 TCEA1P23193 301 aaKnown RBP6.03□□□□□ -1.44
SS18-214ENST00000580003 CAMPP49913 170 aa6.03□□□□□ -1.44
SS18-214ENST00000580003 CDH8P55286 799 aa6.03□□□□□ -1.44
SS18-214ENST00000580003 ASTE1Q2TB18 679 aaPredicted RBP6.03□□□□□ -1.44
SS18-214ENST00000580003 CCNYL2Q5T2Q4 361 aa6.03□□□□□ -1.44
SS18-214ENST00000580003 Q75L30 129 aa6.03□□□□□ -1.44
SS18-214ENST00000580003 ATG9AQ7Z3C6 839 aa6.03□□□□□ -1.44
SS18-214ENST00000580003 CTAGE4Q8IX94 777 aa6.03□□□□□ -1.44
SS18-214ENST00000580003 ALG14Q96F25 216 aa6.03□□□□□ -1.44
SS18-214ENST00000580003 SCRN2Q96FV2 425 aa6.03□□□□□ -1.44
SS18-214ENST00000580003 ABHD8Q96I13 439 aa6.03□□□□□ -1.44
SS18-214ENST00000580003 GAD1Q99259 594 aa6.03□□□□□ -1.44
SS18-214ENST00000580003 OGFRQ9NZT2 677 aa6.03□□□□□ -1.44
SS18-214ENST00000580003 KLHL9Q9P2J3 617 aa6.03□□□□□ -1.44
SS18-214ENST00000580003 TCF19Q9Y242 345 aa6.03□□□□□ -1.44
SS18-214ENST00000580003 LAS1LQ9Y4W2 734 aaKnown RBP6.03□□□□□ -1.44
SS18-214ENST00000580003 C15orf62A8K5M9 175 aa6.02□□□□□ -1.45
SS18-214ENST00000580003 PLPP2O43688 288 aa6.02□□□□□ -1.45
SS18-214ENST00000580003 SOCS5O75159 536 aa6.02□□□□□ -1.45
SS18-214ENST00000580003 RB1P06400 928 aa6.02□□□□□ -1.45
SS18-214ENST00000580003 CLTBP09497 229 aa6.02□□□□□ -1.45
SS18-214ENST00000580003 CSF2RAP15509 400 aa6.02□□□□□ -1.45
SS18-214ENST00000580003 CD81P60033 236 aa6.02□□□□□ -1.45
SS18-214ENST00000580003 ASPRV1Q53RT3 343 aa6.02□□□□□ -1.45
SS18-214ENST00000580003 CFAP77Q6ZQR2 320 aa6.02□□□□□ -1.45
SS18-214ENST00000580003 C4orf50Q6ZRC1 276 aa6.02□□□□□ -1.45
SS18-214ENST00000580003 MARK2Q7KZI7 788 aaKnown RBP6.02□□□□□ -1.45
SS18-214ENST00000580003 CHST9Q7L1S5 443 aa6.02□□□□□ -1.45
SS18-214ENST00000580003 EPHX4Q8IUS5 362 aa6.02□□□□□ -1.45
SS18-214ENST00000580003 GBGT1Q8N5D6 347 aa6.02□□□□□ -1.45
SS18-214ENST00000580003 C1orf52Q8N6N3 182 aaKnown RBP6.02□□□□□ -1.45
SS18-214ENST00000580003 OXNAD1Q96HP4 312 aaPredicted RBP6.02□□□□□ -1.45
SS18-214ENST00000580003 ST6GAL2Q96JF0 529 aa6.02□□□□□ -1.45
SS18-214ENST00000580003 C1QTNF1Q9BXJ1 281 aa6.02□□□□□ -1.45
SS18-214ENST00000580003 RAD21L1Q9H4I0 556 aa6.02□□□□□ -1.45
SS18-214ENST00000580003 CMAHPQ9Y471 501 aa6.02□□□□□ -1.45
SS18-214ENST00000580003 AP3D1O14617 1153 aa6.01□□□□□ -1.45
SS18-214ENST00000580003 PDE9AO76083 593 aa6.01□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms