RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 CHRM3P20309 590 aa24.81■■□□□ 1.56
SHMT1-207ENST00000580002 RPS3P23396 243 aaKnown RBP eCLIP24.81■■□□□ 1.56
SHMT1-207ENST00000580002 IGFALSP35858 605 aa24.81■■□□□ 1.56
SHMT1-207ENST00000580002 CTSCP53634 463 aa24.81■■□□□ 1.56
SHMT1-207ENST00000580002 ADARP55265 1226 aaKnown RBP24.81■■□□□ 1.56
SHMT1-207ENST00000580002 CLDN2P57739 230 aa24.81■■□□□ 1.56
SHMT1-207ENST00000580002 ITIH4Q14624 930 aa24.81■■□□□ 1.56
SHMT1-207ENST00000580002 PTRHD1Q6GMV3 140 aaKnown RBP24.81■■□□□ 1.56
SHMT1-207ENST00000580002 NLRP8Q86W28 1048 aa24.81■■□□□ 1.56
SHMT1-207ENST00000580002 CENPLQ8N0S6 344 aaPredicted RBP24.81■■□□□ 1.56
SHMT1-207ENST00000580002 APOPT1Q96IL0 206 aa24.81■■□□□ 1.56
SHMT1-207ENST00000580002 GPR174Q9BXC1 333 aa24.81■■□□□ 1.56
SHMT1-207ENST00000580002 CCDC68Q9H2F9 335 aa24.81■■□□□ 1.56
SHMT1-207ENST00000580002 SGK2Q9HBY8 427 aa24.81■■□□□ 1.56
SHMT1-207ENST00000580002 CACNA1IQ9P0X4 2223 aa24.81■■□□□ 1.56
SHMT1-207ENST00000580002 TTC28Q96AY4 2481 aa24.81■■□□□ 1.56
SHMT1-207ENST00000580002 USP34Q70CQ2 3546 aa24.81■■□□□ 1.56
SHMT1-207ENST00000580002 C10orf142B7Z368 130 aa24.8■■□□□ 1.56
SHMT1-207ENST00000580002 COPEO14579 308 aa24.8■■□□□ 1.56
SHMT1-207ENST00000580002 TRIM16O95361 564 aa24.8■■□□□ 1.56
SHMT1-207ENST00000580002 ESR1P03372 595 aa24.8■■□□□ 1.56
SHMT1-207ENST00000580002 NSG1P42857 185 aa24.8■■□□□ 1.56
SHMT1-207ENST00000580002 SLC12A2P55011 1212 aa24.8■■□□□ 1.56
SHMT1-207ENST00000580002 PAQR3Q6TCH7 311 aa24.8■■□□□ 1.56
SHMT1-207ENST00000580002 MTERF4Q7Z6M4 381 aaKnown RBP24.8■■□□□ 1.56
SHMT1-207ENST00000580002 CLEC14AQ86T13 490 aa24.8■■□□□ 1.56
SHMT1-207ENST00000580002 HEATR4Q86WZ0 1026 aa24.8■■□□□ 1.56
SHMT1-207ENST00000580002 DENND1AQ8TEH3 1009 aa24.8■■□□□ 1.56
SHMT1-207ENST00000580002 NXNL1Q96CM4 212 aa24.8■■□□□ 1.56
SHMT1-207ENST00000580002 TTC1Q99614 292 aa24.8■■□□□ 1.56
SHMT1-207ENST00000580002 EMCNQ9ULC0 261 aa24.8■■□□□ 1.56
SHMT1-207ENST00000580002 VPS9D1Q9Y2B5 631 aa24.8■■□□□ 1.56
SHMT1-207ENST00000580002 OR2AG2A6NM03 316 aa24.8■■□□□ 1.56
SHMT1-207ENST00000580002 PFDN6O15212 129 aa24.8■■□□□ 1.56
SHMT1-207ENST00000580002 MPOP05164 745 aa24.8■■□□□ 1.56
SHMT1-207ENST00000580002 ATP1B2P14415 290 aaPredicted RBP24.8■■□□□ 1.56
SHMT1-207ENST00000580002 CHN1P15882 459 aa24.8■■□□□ 1.56
SHMT1-207ENST00000580002 PPARGP37231 505 aaPredicted RBP24.8■■□□□ 1.56
SHMT1-207ENST00000580002 IRX4P78413 519 aa24.8■■□□□ 1.56
SHMT1-207ENST00000580002 SFSWAPQ12872 951 aaKnown RBP24.8■■□□□ 1.56
SHMT1-207ENST00000580002 TMEM115Q12893 351 aaPredicted RBP24.8■■□□□ 1.56
SHMT1-207ENST00000580002 MAP7D1Q3KQU3 841 aa24.8■■□□□ 1.56
SHMT1-207ENST00000580002 NEK5Q6P3R8 708 aa24.8■■□□□ 1.56
SHMT1-207ENST00000580002 ADGRG6Q86SQ4 1221 aa24.8■■□□□ 1.56
SHMT1-207ENST00000580002 ACMSDQ8TDX5 336 aa24.8■■□□□ 1.56
SHMT1-207ENST00000580002 OR2AG1Q9H205 316 aa24.8■■□□□ 1.56
SHMT1-207ENST00000580002 KDM4CQ9H3R0 1056 aa24.8■■□□□ 1.56
SHMT1-207ENST00000580002 GPAMQ9HCL2 828 aa24.8■■□□□ 1.56
SHMT1-207ENST00000580002 TMEM216Q9P0N5 145 aa24.8■■□□□ 1.56
SHMT1-207ENST00000580002 TLK1Q9UKI8 766 aa24.8■■□□□ 1.56
SHMT1-207ENST00000580002 CORO1CQ9ULV4 474 aaPredicted RBP24.8■■□□□ 1.56
SHMT1-207ENST00000580002 SLCO1B1Q9Y6L6 691 aa24.8■■□□□ 1.56
SHMT1-207ENST00000580002 POM121BA6NF01 834 aa24.79■■□□□ 1.56
SHMT1-207ENST00000580002 LRRC72A6NJI9 287 aa24.79■■□□□ 1.56
SHMT1-207ENST00000580002 H0Y8X5 98 aa24.79■■□□□ 1.56
SHMT1-207ENST00000580002 PRPF4O43172 522 aaKnown RBP eCLIP24.79■■□□□ 1.56
SHMT1-207ENST00000580002 IGHV4-34P06331 123 aa24.79■■□□□ 1.56
SHMT1-207ENST00000580002 MSH3P20585 1137 aa24.79■■□□□ 1.56
SHMT1-207ENST00000580002 CD6P30203 668 aa24.79■■□□□ 1.56
SHMT1-207ENST00000580002 POLD2P49005 469 aa24.79■■□□□ 1.56
SHMT1-207ENST00000580002 CLCN7P51798 805 aa24.79■■□□□ 1.56
SHMT1-207ENST00000580002 WDR4P57081 412 aaKnown RBP24.79■■□□□ 1.56
SHMT1-207ENST00000580002 DOK6Q6PKX4 331 aa24.79■■□□□ 1.56
SHMT1-207ENST00000580002 MACC1Q6ZN28 852 aa24.79■■□□□ 1.56
SHMT1-207ENST00000580002 ATXN10Q9UBB4 475 aa24.79■■□□□ 1.56
SHMT1-207ENST00000580002 TSR3Q9UJK0 312 aaKnown RBP24.79■■□□□ 1.56
SHMT1-207ENST00000580002 GRID1Q9ULK0 1009 aa24.79■■□□□ 1.56
SHMT1-207ENST00000580002 FSBPO95073 299 aa24.78■■□□□ 1.56
SHMT1-207ENST00000580002 CRABP2P29373 138 aa24.78■■□□□ 1.56
SHMT1-207ENST00000580002 CDK3Q00526 305 aa24.78■■□□□ 1.56
SHMT1-207ENST00000580002 CSHL1Q14406 222 aa24.78■■□□□ 1.56
SHMT1-207ENST00000580002 LDLRAP1Q5SW96 308 aa24.78■■□□□ 1.56
SHMT1-207ENST00000580002 ADAMTSL4Q6UY14 1074 aa24.78■■□□□ 1.56
SHMT1-207ENST00000580002 TRIM69Q86WT6 500 aa24.78■■□□□ 1.56
SHMT1-207ENST00000580002 PHYKPLQ8IUZ5 450 aa24.78■■□□□ 1.56
SHMT1-207ENST00000580002 CD200R1Q8TD46 325 aa24.78■■□□□ 1.56
SHMT1-207ENST00000580002 DCUN1D1Q96GG9 259 aa24.78■■□□□ 1.56
SHMT1-207ENST00000580002 COX14Q96I36 57 aa24.78■■□□□ 1.56
SHMT1-207ENST00000580002 HIC2Q96JB3 615 aa24.78■■□□□ 1.56
SHMT1-207ENST00000580002 FAM111AQ96PZ2 611 aa24.78■■□□□ 1.56
SHMT1-207ENST00000580002 IGSF5Q9NSI5 407 aa24.78■■□□□ 1.56
SHMT1-207ENST00000580002 GNPTGQ9UJJ9 305 aa24.78■■□□□ 1.56
SHMT1-207ENST00000580002 IKZF3Q9UKT9 509 aa24.78■■□□□ 1.56
SHMT1-207ENST00000580002 RUVBL2Q9Y230 463 aaKnown RBP24.78■■□□□ 1.56
SHMT1-207ENST00000580002 ACOT9Q9Y305 439 aa24.78■■□□□ 1.56
SHMT1-207ENST00000580002 PCDHB1Q9Y5F3 818 aa24.78■■□□□ 1.56
SHMT1-207ENST00000580002 CCDC166P0CW27 439 aa24.77■■□□□ 1.56
SHMT1-207ENST00000580002 AOC1P19801 751 aa24.77■■□□□ 1.56
SHMT1-207ENST00000580002 CRHR1P34998 444 aa24.77■■□□□ 1.56
SHMT1-207ENST00000580002 GLRBP48167 497 aa24.77■■□□□ 1.56
SHMT1-207ENST00000580002 GPR78Q96P69 363 aa24.77■■□□□ 1.56
SHMT1-207ENST00000580002 SSU72Q9NP77 194 aaKnown RBP24.77■■□□□ 1.56
SHMT1-207ENST00000580002 SPATA6Q9NWH7 488 aaPredicted RBP24.77■■□□□ 1.56
SHMT1-207ENST00000580002 TAS2R13Q9NYV9 303 aa24.77■■□□□ 1.56
SHMT1-207ENST00000580002 PLLPQ9Y342 182 aa24.77■■□□□ 1.56
SHMT1-207ENST00000580002 PRKAB1Q9Y478 270 aa24.77■■□□□ 1.56
SHMT1-207ENST00000580002 PIKFYVEQ9Y2I7 2098 aa24.77■■□□□ 1.56
SHMT1-207ENST00000580002 TMEM221A6NGB7 291 aa24.77■■□□□ 1.56
SHMT1-207ENST00000580002 M0R296 226 aa24.77■■□□□ 1.56
SHMT1-207ENST00000580002 TRIM23P36406 574 aa24.77■■□□□ 1.56
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms