RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 PDLIM5Q96HC4 596 aaKnown RBP9.98□□□□□ -0.81
VPS53-220ENST00000576149 HIPK3Q9H422 1215 aa9.98□□□□□ -0.81
VPS53-220ENST00000576149 IL1RL2Q9HB29 575 aa9.98□□□□□ -0.81
VPS53-220ENST00000576149 MAGEE1Q9HCI5 957 aa9.98□□□□□ -0.81
VPS53-220ENST00000576149 AIG1Q9NVV5 245 aa9.98□□□□□ -0.81
VPS53-220ENST00000576149 GID8Q9NWU2 228 aa9.98□□□□□ -0.81
VPS53-220ENST00000576149 GMPR2Q9P2T1 348 aaKnown RBP9.98□□□□□ -0.81
VPS53-220ENST00000576149 VPS51Q9UID3 782 aa9.98□□□□□ -0.81
VPS53-220ENST00000576149 FCF1Q9Y324 198 aaKnown RBP9.98□□□□□ -0.81
VPS53-220ENST00000576149 SCN5AQ14524 2016 aa9.97□□□□□ -0.81
VPS53-220ENST00000576149 IQCF5A8MTL0 148 aa9.97□□□□□ -0.81
VPS53-220ENST00000576149 C9JVG2 144 aa9.97□□□□□ -0.81
VPS53-220ENST00000576149 GPR39O43194 453 aa9.97□□□□□ -0.81
VPS53-220ENST00000576149 GREM1O60565 184 aa9.97□□□□□ -0.81
VPS53-220ENST00000576149 STAMBPO95630 424 aa9.97□□□□□ -0.81
VPS53-220ENST00000576149 PABPC4LP0CB38 370 aaKnown RBP9.97□□□□□ -0.81
VPS53-220ENST00000576149 SMIM18P0DKX4 95 aa9.97□□□□□ -0.81
VPS53-220ENST00000576149 HSD17B1P14061 328 aa9.97□□□□□ -0.81
VPS53-220ENST00000576149 SLC6A2P23975 617 aa9.97□□□□□ -0.81
VPS53-220ENST00000576149 FOXM1Q08050 763 aa9.97□□□□□ -0.81
VPS53-220ENST00000576149 BIRC2Q13490 618 aa9.97□□□□□ -0.81
VPS53-220ENST00000576149 RBBP7Q16576 425 aa9.97□□□□□ -0.81
VPS53-220ENST00000576149 DEFB115Q30KQ5 88 aa9.97□□□□□ -0.81
VPS53-220ENST00000576149 C6orf52Q5T4I8 152 aa9.97□□□□□ -0.81
VPS53-220ENST00000576149 ATXN7L2Q5T6C5 722 aaPredicted RBP9.97□□□□□ -0.81
VPS53-220ENST00000576149 GPRIN3Q6ZVF9 776 aa9.97□□□□□ -0.81
VPS53-220ENST00000576149 LYSMD3Q7Z3D4 306 aa9.97□□□□□ -0.81
VPS53-220ENST00000576149 DEFB128Q7Z7B8 93 aa9.97□□□□□ -0.81
VPS53-220ENST00000576149 OR2T34Q8NGX1 318 aa9.97□□□□□ -0.81
VPS53-220ENST00000576149 OR2T3Q8NH03 318 aa9.97□□□□□ -0.81
VPS53-220ENST00000576149 ADAMTS19Q8TE59 1207 aa9.97□□□□□ -0.81
VPS53-220ENST00000576149 ESAMQ96AP7 390 aa9.97□□□□□ -0.81
VPS53-220ENST00000576149 LRRC58Q96CX6 371 aa9.97□□□□□ -0.81
VPS53-220ENST00000576149 PLEKHG4BQ96PX9 1271 aa9.97□□□□□ -0.81
VPS53-220ENST00000576149 SLC22A12Q96S37 553 aa9.97□□□□□ -0.81
VPS53-220ENST00000576149 EFHD1Q9BUP0 239 aa9.97□□□□□ -0.81
VPS53-220ENST00000576149 SPATA16Q9BXB7 569 aa9.97□□□□□ -0.81
VPS53-220ENST00000576149 GPR63Q9BZJ6 419 aa9.97□□□□□ -0.81
VPS53-220ENST00000576149 SEMA6AQ9H2E6 1030 aa9.97□□□□□ -0.81
VPS53-220ENST00000576149 COQ10BQ9H8M1 238 aa9.97□□□□□ -0.81
VPS53-220ENST00000576149 PFDN4Q9NQP4 134 aa9.97□□□□□ -0.81
VPS53-220ENST00000576149 PAPOLBQ9NRJ5 636 aaKnown RBP9.97□□□□□ -0.81
VPS53-220ENST00000576149 CD274Q9NZQ7 290 aa9.97□□□□□ -0.81
VPS53-220ENST00000576149 EIF2B4Q9UI10 523 aaKnown RBP9.97□□□□□ -0.81
VPS53-220ENST00000576149 PCDHGB4Q9UN71 923 aa9.97□□□□□ -0.81
VPS53-220ENST00000576149 DHRS7Q9Y394 339 aa9.97□□□□□ -0.81
VPS53-220ENST00000576149 ASB1Q9Y576 335 aa9.97□□□□□ -0.81
VPS53-220ENST00000576149 PCDHGB5Q9Y5G0 923 aa9.97□□□□□ -0.81
VPS53-220ENST00000576149 A0A1W2PP18 115 aa9.97□□□□□ -0.81
VPS53-220ENST00000576149 PRMT5O14744 637 aaPredicted RBP9.97□□□□□ -0.81
VPS53-220ENST00000576149 SCAMP3O14828 347 aaKnown RBP9.97□□□□□ -0.81
VPS53-220ENST00000576149 GIPC1O14908 333 aa9.97□□□□□ -0.81
VPS53-220ENST00000576149 CSPG5O95196 566 aa9.97□□□□□ -0.81
VPS53-220ENST00000576149 PGLSO95336 258 aa9.97□□□□□ -0.81
VPS53-220ENST00000576149 ATP6V1B2P21281 511 aa9.97□□□□□ -0.81
VPS53-220ENST00000576149 CSKP41240 450 aa9.97□□□□□ -0.81
VPS53-220ENST00000576149 GRIA3P42263 894 aa9.97□□□□□ -0.81
VPS53-220ENST00000576149 ZFP36L2P47974 494 aaKnown RBP9.97□□□□□ -0.81
VPS53-220ENST00000576149 AP1S1P61966 158 aa9.97□□□□□ -0.81
VPS53-220ENST00000576149 ZXDBP98169 803 aa9.97□□□□□ -0.81
VPS53-220ENST00000576149 RCAN2Q14206 197 aa9.97□□□□□ -0.81
VPS53-220ENST00000576149 CAPRIN1Q14444 709 aaKnown RBP9.97□□□□□ -0.81
VPS53-220ENST00000576149 HMBOX1Q6NT76 420 aa9.97□□□□□ -0.81
VPS53-220ENST00000576149 CERS6Q6ZMG9 384 aa9.97□□□□□ -0.81
VPS53-220ENST00000576149 AHI1Q8N157 1196 aa9.97□□□□□ -0.81
VPS53-220ENST00000576149 WFDC5Q8TCV5 224 aa9.97□□□□□ -0.81
VPS53-220ENST00000576149 PIH1D2Q8WWB5 315 aa9.97□□□□□ -0.81
VPS53-220ENST00000576149 ZNF597Q96LX8 424 aa9.97□□□□□ -0.81
VPS53-220ENST00000576149 CNBD2Q96M20 576 aa9.97□□□□□ -0.81
VPS53-220ENST00000576149 ZNF382Q96SR6 550 aa9.97□□□□□ -0.81
VPS53-220ENST00000576149 ACOX2Q99424 681 aa9.97□□□□□ -0.81
VPS53-220ENST00000576149 CCT7Q99832 543 aa9.97□□□□□ -0.81
VPS53-220ENST00000576149 SLC2A11Q9BYW1 496 aa9.97□□□□□ -0.81
VPS53-220ENST00000576149 BRINP2Q9C0B6 783 aa9.97□□□□□ -0.81
VPS53-220ENST00000576149 SARS2Q9NP81 518 aaKnown RBP9.97□□□□□ -0.81
VPS53-220ENST00000576149 ARMC1Q9NVT9 282 aa9.97□□□□□ -0.81
VPS53-220ENST00000576149 CMTM6Q9NX76 183 aa9.97□□□□□ -0.81
VPS53-220ENST00000576149 NUDT4Q9NZJ9 180 aa9.97□□□□□ -0.81
VPS53-220ENST00000576149 CNOT6Q9ULM6 557 aaKnown RBP9.97□□□□□ -0.81
VPS53-220ENST00000576149 PCDHB1Q9Y5F3 818 aa9.97□□□□□ -0.81
VPS53-220ENST00000576149 SNX13Q9Y5W8 968 aa9.97□□□□□ -0.81
VPS53-220ENST00000576149 SLC30A1Q9Y6M5 507 aa9.97□□□□□ -0.81
VPS53-220ENST00000576149 TYW5A2RUC4 315 aaKnown RBP9.96□□□□□ -0.81
VPS53-220ENST00000576149 C7orf72A4D263 438 aa9.96□□□□□ -0.81
VPS53-220ENST00000576149 AQP12BA6NM10 295 aa9.96□□□□□ -0.81
VPS53-220ENST00000576149 PRRG1O14668 218 aa9.96□□□□□ -0.81
VPS53-220ENST00000576149 ALPIP09923 528 aa9.96□□□□□ -0.81
VPS53-220ENST00000576149 CTPS1P17812 591 aa9.96□□□□□ -0.81
VPS53-220ENST00000576149 YBX1P67809 324 aaKnown RBP9.96□□□□□ -0.81
VPS53-220ENST00000576149 BNIP2Q12982 314 aa9.96□□□□□ -0.81
VPS53-220ENST00000576149 CDH18Q13634 790 aa9.96□□□□□ -0.81
VPS53-220ENST00000576149 RAB33AQ14088 237 aa9.96□□□□□ -0.81
VPS53-220ENST00000576149 IKBKEQ14164 716 aa9.96□□□□□ -0.81
VPS53-220ENST00000576149 GK3PQ14409 553 aa9.96□□□□□ -0.81
VPS53-220ENST00000576149 SPATS1Q496A3 300 aa9.96□□□□□ -0.81
VPS53-220ENST00000576149 MTX3Q5HYI7 312 aa9.96□□□□□ -0.81
VPS53-220ENST00000576149 ARMC12Q5T9G4 340 aa9.96□□□□□ -0.81
VPS53-220ENST00000576149 SLC30A9Q6PML9 568 aa9.96□□□□□ -0.81
VPS53-220ENST00000576149 Q6ZNB5 142 aa9.96□□□□□ -0.81
VPS53-220ENST00000576149 AQP12AQ8IXF9 295 aa9.96□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms