RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 SERBP1Q8NC51 408 aaKnown RBP eCLIP9.18□□□□□ -0.94
VPS35-211ENST00000569950 ACVR1CQ8NER5 493 aa9.18□□□□□ -0.94
VPS35-211ENST00000569950 OR56A4Q8NGH8 313 aa9.18□□□□□ -0.94
VPS35-211ENST00000569950 CCL4L1Q8NHW4 92 aa9.18□□□□□ -0.94
VPS35-211ENST00000569950 CEP76Q8TAP6 659 aa9.18□□□□□ -0.94
VPS35-211ENST00000569950 LKAAEAR1Q8TD35 194 aa9.18□□□□□ -0.94
VPS35-211ENST00000569950 TSACCQ96A04 125 aaPredicted RBP9.18□□□□□ -0.94
VPS35-211ENST00000569950 CERS2Q96G23 380 aa9.18□□□□□ -0.94
VPS35-211ENST00000569950 CFAP36Q96G28 342 aa9.18□□□□□ -0.94
VPS35-211ENST00000569950 WDR92Q96MX6 357 aa9.18□□□□□ -0.94
VPS35-211ENST00000569950 BIRC8Q96P09 236 aa9.18□□□□□ -0.94
VPS35-211ENST00000569950 PARD6BQ9BYG5 372 aa9.18□□□□□ -0.94
VPS35-211ENST00000569950 OR2AG1Q9H205 316 aa9.18□□□□□ -0.94
VPS35-211ENST00000569950 TRIM39Q9HCM9 518 aa9.18□□□□□ -0.94
VPS35-211ENST00000569950 PHPT1Q9NRX4 125 aaPredicted RBP9.18□□□□□ -0.94
VPS35-211ENST00000569950 SEMA4GQ9NTN9 838 aa9.18□□□□□ -0.94
VPS35-211ENST00000569950 CATSPERZQ9NTU4 200 aa9.18□□□□□ -0.94
VPS35-211ENST00000569950 UCKL1Q9NWZ5 548 aa9.18□□□□□ -0.94
VPS35-211ENST00000569950 ZDHHC3Q9NYG2 299 aa9.18□□□□□ -0.94
VPS35-211ENST00000569950 A0A1B0GTQ1 180 aa9.17□□□□□ -0.94
VPS35-211ENST00000569950 A6NCN8 305 aa9.17□□□□□ -0.94
VPS35-211ENST00000569950 SCAMP1O15126 338 aa9.17□□□□□ -0.94
VPS35-211ENST00000569950 LRP3O75074 770 aa9.17□□□□□ -0.94
VPS35-211ENST00000569950 SLC25A14O95258 325 aaPredicted RBP9.17□□□□□ -0.94
VPS35-211ENST00000569950 EML2O95834 649 aa9.17□□□□□ -0.94
VPS35-211ENST00000569950 CFIP05156 583 aa9.17□□□□□ -0.94
VPS35-211ENST00000569950 GNSP15586 552 aa9.17□□□□□ -0.94
VPS35-211ENST00000569950 ENGP17813 658 aa9.17□□□□□ -0.94
VPS35-211ENST00000569950 ITGALP20701 1170 aa9.17□□□□□ -0.94
VPS35-211ENST00000569950 OGNP20774 298 aaKnown RBP9.17□□□□□ -0.94
VPS35-211ENST00000569950 GCAP28676 217 aa9.17□□□□□ -0.94
VPS35-211ENST00000569950 HK3P52790 923 aa9.17□□□□□ -0.94
VPS35-211ENST00000569950 SRP54P61011 504 aaKnown RBP9.17□□□□□ -0.94
VPS35-211ENST00000569950 MPP1Q00013 466 aa9.17□□□□□ -0.94
VPS35-211ENST00000569950 TMEM115Q12893 351 aaPredicted RBP9.17□□□□□ -0.94
VPS35-211ENST00000569950 BNIP3Q12983 259 aa9.17□□□□□ -0.94
VPS35-211ENST00000569950 CTBP1Q13363 440 aa9.17□□□□□ -0.94
VPS35-211ENST00000569950 HLTFQ14527 1009 aaKnown RBP eCLIP9.17□□□□□ -0.94
VPS35-211ENST00000569950 EFTUD2Q15029 972 aaKnown RBP eCLIP9.17□□□□□ -0.94
VPS35-211ENST00000569950 CSRP2Q16527 193 aa9.17□□□□□ -0.94
VPS35-211ENST00000569950 HLA-BQ31612 363 aa9.17□□□□□ -0.94
VPS35-211ENST00000569950 ZRANB3Q5FWF4 1079 aa9.17□□□□□ -0.94
VPS35-211ENST00000569950 LDLRAP1Q5SW96 308 aa9.17□□□□□ -0.94
VPS35-211ENST00000569950 DOK6Q6PKX4 331 aa9.17□□□□□ -0.94
VPS35-211ENST00000569950 DBX2Q6ZNG2 339 aa9.17□□□□□ -0.94
VPS35-211ENST00000569950 CAPN12Q6ZSI9 719 aa9.17□□□□□ -0.94
VPS35-211ENST00000569950 KCNMB4Q86W47 210 aa9.17□□□□□ -0.94
VPS35-211ENST00000569950 PARGQ86W56 976 aa9.17□□□□□ -0.94
VPS35-211ENST00000569950 PHYKPLQ8IUZ5 450 aa9.17□□□□□ -0.94
VPS35-211ENST00000569950 CCNJLQ8IV13 435 aa9.17□□□□□ -0.94
VPS35-211ENST00000569950 PHACTR4Q8IZ21 702 aa9.17□□□□□ -0.94
VPS35-211ENST00000569950 OXR1Q8N573 874 aa9.17□□□□□ -0.94
VPS35-211ENST00000569950 BEND7Q8N7W2 519 aaPredicted RBP9.17□□□□□ -0.94
VPS35-211ENST00000569950 C2CD4AQ8NCU7 369 aaPredicted RBP9.17□□□□□ -0.94
VPS35-211ENST00000569950 OR6P1Q8NGX9 317 aa9.17□□□□□ -0.94
VPS35-211ENST00000569950 GSDMBQ8TAX9 411 aa9.17□□□□□ -0.94
VPS35-211ENST00000569950 SAP25Q8TEE9 199 aa9.17□□□□□ -0.94
VPS35-211ENST00000569950 PYROXD1Q8WU10 500 aa9.17□□□□□ -0.94
VPS35-211ENST00000569950 ULK4Q96C45 1275 aa9.17□□□□□ -0.94
VPS35-211ENST00000569950 SGF29Q96ES7 293 aa9.17□□□□□ -0.94
VPS35-211ENST00000569950 LRRC61Q9BV99 259 aa9.17□□□□□ -0.94
VPS35-211ENST00000569950 C20orf96Q9NUD7 363 aaPredicted RBP9.17□□□□□ -0.94
VPS35-211ENST00000569950 SAMD15Q9P1V8 674 aa9.17□□□□□ -0.94
VPS35-211ENST00000569950 GALPQ9UBC7 116 aa9.17□□□□□ -0.94
VPS35-211ENST00000569950 RABGEF1Q9UJ41 708 aa9.17□□□□□ -0.94
VPS35-211ENST00000569950 SUFUQ9UMX1 484 aa9.17□□□□□ -0.94
VPS35-211ENST00000569950 PRKAB1Q9Y478 270 aa9.17□□□□□ -0.94
VPS35-211ENST00000569950 SLC30A1Q9Y6M5 507 aa9.17□□□□□ -0.94
VPS35-211ENST00000569950 ANKRD12Q6UB98 2062 aa9.16□□□□□ -0.94
VPS35-211ENST00000569950 LY6G6EA0A0G2JKS1 128 aa9.16□□□□□ -0.94
VPS35-211ENST00000569950 HMX2A2RU54 273 aa9.16□□□□□ -0.94
VPS35-211ENST00000569950 CACNB4O00305 520 aaPredicted RBP9.16□□□□□ -0.94
VPS35-211ENST00000569950 VEGFDO43915 354 aa9.16□□□□□ -0.94
VPS35-211ENST00000569950 GDF9O60383 454 aa9.16□□□□□ -0.94
VPS35-211ENST00000569950 HAUS5O94927 633 aa9.16□□□□□ -0.94
VPS35-211ENST00000569950 AHSGP02765 367 aa9.16□□□□□ -0.94
VPS35-211ENST00000569950 GSTA2P09210 222 aa9.16□□□□□ -0.94
VPS35-211ENST00000569950 RPS3P23396 243 aaKnown RBP eCLIP9.16□□□□□ -0.94
VPS35-211ENST00000569950 EPHA8P29322 1005 aaPredicted RBP9.16□□□□□ -0.94
VPS35-211ENST00000569950 ABCG1P45844 678 aa9.16□□□□□ -0.94
VPS35-211ENST00000569950 LEPRP48357 1165 aaKnown RBP9.16□□□□□ -0.94
VPS35-211ENST00000569950 PRLHRP49683 370 aa9.16□□□□□ -0.94
VPS35-211ENST00000569950 CSRP3P50461 194 aa9.16□□□□□ -0.94
VPS35-211ENST00000569950 THOP1P52888 689 aa9.16□□□□□ -0.94
VPS35-211ENST00000569950 PGGT1BP53609 377 aa9.16□□□□□ -0.94
VPS35-211ENST00000569950 ADARP55265 1226 aaKnown RBP9.16□□□□□ -0.94
VPS35-211ENST00000569950 TUBB4BP68371 445 aa9.16□□□□□ -0.94
VPS35-211ENST00000569950 PRAMEP78395 509 aa9.16□□□□□ -0.94
VPS35-211ENST00000569950 ITIH4Q14624 930 aa9.16□□□□□ -0.94
VPS35-211ENST00000569950 TEAD4Q15561 434 aa9.16□□□□□ -0.94
VPS35-211ENST00000569950 BCL7AQ4VC05 210 aa9.16□□□□□ -0.94
VPS35-211ENST00000569950 ZNF470Q6ECI4 717 aa9.16□□□□□ -0.94
VPS35-211ENST00000569950 ZNF449Q6P9G9 518 aa9.16□□□□□ -0.94
VPS35-211ENST00000569950 CNSTQ6PJW8 725 aa9.16□□□□□ -0.94
VPS35-211ENST00000569950 ENPP7Q6UWV6 458 aa9.16□□□□□ -0.94
VPS35-211ENST00000569950 PRR23CQ6ZRP0 262 aa9.16□□□□□ -0.94
VPS35-211ENST00000569950 FAM83HQ6ZRV2 1179 aaPredicted RBP9.16□□□□□ -0.94
VPS35-211ENST00000569950 MARK2Q7KZI7 788 aaKnown RBP9.16□□□□□ -0.94
VPS35-211ENST00000569950 RABEPKQ7Z6M1 372 aa9.16□□□□□ -0.94
VPS35-211ENST00000569950 GALNT7Q86SF2 657 aa9.16□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms