RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 PDLIM5Q96HC4 596 aaKnown RBP20.06■□□□□ 0.8
CLN3-230ENST00000568076 HGH1Q9BTY7 390 aa20.06■□□□□ 0.8
CLN3-230ENST00000568076 CIPCQ9C0C6 399 aa20.06■□□□□ 0.8
CLN3-230ENST00000568076 YY1AP1Q9H869 796 aa20.06■□□□□ 0.8
CLN3-230ENST00000568076 TLR9Q9NR96 1032 aa20.06■□□□□ 0.8
CLN3-230ENST00000568076 TRBV5-4A0A0C4DH59 114 aa20.05■□□□□ 0.8
CLN3-230ENST00000568076 TRIM24O15164 1050 aa20.05■□□□□ 0.8
CLN3-230ENST00000568076 SNX2O60749 519 aa20.05■□□□□ 0.8
CLN3-230ENST00000568076 ESRRBO95718 433 aa20.05■□□□□ 0.8
CLN3-230ENST00000568076 HGFP14210 728 aa20.05■□□□□ 0.8
CLN3-230ENST00000568076 ZNF7P17097 686 aaPredicted RBP20.05■□□□□ 0.8
CLN3-230ENST00000568076 ITGB6P18564 788 aa20.05■□□□□ 0.8
CLN3-230ENST00000568076 RPS3P23396 243 aaKnown RBP eCLIP20.05■□□□□ 0.84e-6■■□□□ 12.9
CLN3-230ENST00000568076 SEMG2Q02383 582 aa20.05■□□□□ 0.8
CLN3-230ENST00000568076 TRIP10Q15642 601 aa20.05■□□□□ 0.8
CLN3-230ENST00000568076 PTRHD1Q6GMV3 140 aaKnown RBP20.05■□□□□ 0.8
CLN3-230ENST00000568076 LAYNQ6UX15 382 aa20.05■□□□□ 0.8
CLN3-230ENST00000568076 TMEM199Q8N511 208 aa20.05■□□□□ 0.8
CLN3-230ENST00000568076 CLDN19Q8N6F1 224 aa20.05■□□□□ 0.8
CLN3-230ENST00000568076 KLHL32Q96NJ5 620 aa20.05■□□□□ 0.8
CLN3-230ENST00000568076 C17orf80Q9BSJ5 609 aa20.05■□□□□ 0.8
CLN3-230ENST00000568076 BEGAINQ9BUH8 593 aa20.05■□□□□ 0.8
CLN3-230ENST00000568076 CLPBQ9H078 707 aa20.05■□□□□ 0.8
CLN3-230ENST00000568076 MLYCDO95822 493 aa20.04■□□□□ 0.8
CLN3-230ENST00000568076 ADH1AP07327 375 aa20.04■□□□□ 0.8
CLN3-230ENST00000568076 PRR35P0CG20 571 aa20.04■□□□□ 0.8
CLN3-230ENST00000568076 LBPP18428 481 aa20.04■□□□□ 0.8
CLN3-230ENST00000568076 NAA20P61599 178 aa20.04■□□□□ 0.8
CLN3-230ENST00000568076 HTRA4P83105 476 aaPredicted RBP20.04■□□□□ 0.8
CLN3-230ENST00000568076 C18orf21Q32NC0 220 aaPredicted RBP20.04■□□□□ 0.8
CLN3-230ENST00000568076 FUT11Q495W5 492 aa20.04■□□□□ 0.8
CLN3-230ENST00000568076 ASTLQ6HA08 431 aaPredicted RBP20.04■□□□□ 0.8
CLN3-230ENST00000568076 SBSNQ6UWP8 590 aa20.04■□□□□ 0.8
CLN3-230ENST00000568076 PQLC1Q8N2U9 271 aa20.04■□□□□ 0.8
CLN3-230ENST00000568076 PAF1Q8N7H5 531 aa20.04■□□□□ 0.8
CLN3-230ENST00000568076 TCEAL4Q96EI5 215 aa20.04■□□□□ 0.8
CLN3-230ENST00000568076 GCNAQ96QF7 691 aa20.04■□□□□ 0.8
CLN3-230ENST00000568076 KLHL4Q9C0H6 718 aa20.04■□□□□ 0.8
CLN3-230ENST00000568076 ASAH2Q9NR71 780 aa20.04■□□□□ 0.8
CLN3-230ENST00000568076 ZDHHC7Q9NXF8 308 aa20.04■□□□□ 0.8
CLN3-230ENST00000568076 DOCK6Q96HP0 2047 aa20.04■□□□□ 0.8
CLN3-230ENST00000568076 PRORSD1PA6NEY8 169 aa20.04■□□□□ 0.8
CLN3-230ENST00000568076 NPIPB15A6NHN6 443 aaPredicted RBP20.04■□□□□ 0.8
CLN3-230ENST00000568076 CRCPO75575 148 aa20.04■□□□□ 0.8
CLN3-230ENST00000568076 ITGALP20701 1170 aa20.04■□□□□ 0.8
CLN3-230ENST00000568076 ACRV1P26436 265 aa20.04■□□□□ 0.8
CLN3-230ENST00000568076 SERPINA4P29622 427 aa20.04■□□□□ 0.8
CLN3-230ENST00000568076 GJA8P48165 433 aa20.04■□□□□ 0.8
CLN3-230ENST00000568076 ERVFC1P60507 584 aa20.04■□□□□ 0.8
CLN3-230ENST00000568076 RALGDSQ12967 914 aa20.04■□□□□ 0.8
CLN3-230ENST00000568076 CHRNA6Q15825 494 aa20.04■□□□□ 0.8
CLN3-230ENST00000568076 RBBP7Q16576 425 aa20.04■□□□□ 0.8
CLN3-230ENST00000568076 METTL3Q86U44 580 aaKnown RBP20.04■□□□□ 0.8
CLN3-230ENST00000568076 RBFAQ8N0V3 343 aa20.04■□□□□ 0.8
CLN3-230ENST00000568076 ELMOD1Q8N336 334 aa20.04■□□□□ 0.8
CLN3-230ENST00000568076 DCBLD1Q8N8Z6 715 aa20.04■□□□□ 0.8
CLN3-230ENST00000568076 OR56A4Q8NGH8 313 aa20.04■□□□□ 0.8
CLN3-230ENST00000568076 ASB9Q96DX5 294 aa20.04■□□□□ 0.8
CLN3-230ENST00000568076 SLC45A3Q96JT2 553 aa20.04■□□□□ 0.8
CLN3-230ENST00000568076 C19orf43Q9BQ61 176 aa20.04■□□□□ 0.8
CLN3-230ENST00000568076 NUSAP1Q9BXS6 441 aaKnown RBP20.04■□□□□ 0.8
CLN3-230ENST00000568076 SDR39U1Q9NRG7 319 aaPredicted RBP20.04■□□□□ 0.8
CLN3-230ENST00000568076 NUDT4Q9NZJ9 180 aa20.04■□□□□ 0.8
CLN3-230ENST00000568076 SUCOQ9UBS9 1254 aaKnown RBP20.04■□□□□ 0.8
CLN3-230ENST00000568076 CD300AQ9UGN4 299 aa20.04■□□□□ 0.8
CLN3-230ENST00000568076 APPL1Q9UKG1 709 aa20.04■□□□□ 0.8
CLN3-230ENST00000568076 TMCO1Q9UM00 188 aa20.04■□□□□ 0.8
CLN3-230ENST00000568076 ZNF106Q9H2Y7 1883 aaKnown RBP20.04■□□□□ 0.8
CLN3-230ENST00000568076 GLYATL1P3A0A0U1RQE8 302 aa20.03■□□□□ 0.8
CLN3-230ENST00000568076 ZBBXA8MT70 800 aa20.03■□□□□ 0.8
CLN3-230ENST00000568076 HIDE1A8MVS5 230 aa20.03■□□□□ 0.8
CLN3-230ENST00000568076 C9JVG2 144 aa20.03■□□□□ 0.8
CLN3-230ENST00000568076 NR5A2O00482 541 aa20.03■□□□□ 0.8
CLN3-230ENST00000568076 UROSP10746 265 aa20.03■□□□□ 0.8
CLN3-230ENST00000568076 CAPN3P20807 821 aa20.03■□□□□ 0.8
CLN3-230ENST00000568076 DIO3P55073 304 aa20.03■□□□□ 0.8
CLN3-230ENST00000568076 MRPS35P82673 323 aaKnown RBP20.03■□□□□ 0.8
CLN3-230ENST00000568076 XKR7Q5GH72 579 aa20.03■□□□□ 0.8
CLN3-230ENST00000568076 OGFRL1Q5TC84 451 aaPredicted RBP20.03■□□□□ 0.8
CLN3-230ENST00000568076 CRTC1Q6UUV9 634 aa20.03■□□□□ 0.8
CLN3-230ENST00000568076 HACD2Q6Y1H2 254 aa20.03■□□□□ 0.8
CLN3-230ENST00000568076 TMEM25Q86YD3 366 aa20.03■□□□□ 0.8
CLN3-230ENST00000568076 MIER2Q8N344 545 aa20.03■□□□□ 0.8
CLN3-230ENST00000568076 OR52B6Q8NGF0 335 aa20.03■□□□□ 0.8
CLN3-230ENST00000568076 GATA6Q92908 595 aa20.03■□□□□ 0.8
CLN3-230ENST00000568076 CLP1Q92989 425 aaKnown RBP20.03■□□□□ 0.8
CLN3-230ENST00000568076 ACOX2Q99424 681 aa20.03■□□□□ 0.8
CLN3-230ENST00000568076 SLC39A3Q9BRY0 314 aa20.03■□□□□ 0.8
CLN3-230ENST00000568076 PCDHAC1Q9H158 963 aa20.03■□□□□ 0.8
CLN3-230ENST00000568076 EBF3Q9H4W6 596 aa20.03■□□□□ 0.8
CLN3-230ENST00000568076 SPAG4Q9NPE6 437 aa20.03■□□□□ 0.8
CLN3-230ENST00000568076 TMEM181Q9P2C4 612 aa20.03■□□□□ 0.8
CLN3-230ENST00000568076 MAP10Q9P2G4 905 aa20.03■□□□□ 0.8
CLN3-230ENST00000568076 CROTQ9UKG9 612 aa20.03■□□□□ 0.8
CLN3-230ENST00000568076 A6NHS1 94 aa20.03■□□□□ 0.8
CLN3-230ENST00000568076 CYBBP04839 570 aa20.03■□□□□ 0.8
CLN3-230ENST00000568076 AQP4P55087 323 aa20.03■□□□□ 0.8
CLN3-230ENST00000568076 TRIM25Q14258 630 aaKnown RBP20.03■□□□□ 0.8
CLN3-230ENST00000568076 VPS26BQ4G0F5 336 aa20.03■□□□□ 0.8
CLN3-230ENST00000568076 OGFOD2Q6N063 350 aa20.03■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 284.7 ms