RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 OLIG2Q13516 323 aa11.71□□□□□ -0.53
LDLR-212ENST00000560467 CRYMQ14894 314 aa11.71□□□□□ -0.53
LDLR-212ENST00000560467 FASTKD3Q14CZ7 662 aaKnown RBP11.71□□□□□ -0.53
LDLR-212ENST00000560467 QPCTQ16769 361 aa11.71□□□□□ -0.53
LDLR-212ENST00000560467 UGP2Q16851 508 aa11.71□□□□□ -0.53
LDLR-212ENST00000560467 KRT71Q3SY84 523 aa11.71□□□□□ -0.53
LDLR-212ENST00000560467 CEP85LQ5SZL2 805 aa11.71□□□□□ -0.53
LDLR-212ENST00000560467 TSTD2Q5T7W7 516 aa11.71□□□□□ -0.53
LDLR-212ENST00000560467 MRNIPQ6NTE8 343 aa11.71□□□□□ -0.53
LDLR-212ENST00000560467 UNC5AQ6ZN44 842 aa11.71□□□□□ -0.53
LDLR-212ENST00000560467 GCNT7Q6ZNI0 430 aa11.71□□□□□ -0.53
LDLR-212ENST00000560467 TMEM135Q86UB9 458 aa11.71□□□□□ -0.53
LDLR-212ENST00000560467 HORMAD1Q86X24 394 aa11.71□□□□□ -0.53
LDLR-212ENST00000560467 LRRC6Q86X45 466 aa11.71□□□□□ -0.53
LDLR-212ENST00000560467 LMNTD2Q8IXW0 634 aa11.71□□□□□ -0.53
LDLR-212ENST00000560467 IQCKQ8N0W5 287 aa11.71□□□□□ -0.53
LDLR-212ENST00000560467 UHMK1Q8TAS1 419 aaKnown RBP11.71□□□□□ -0.53
LDLR-212ENST00000560467 FBF1Q8TES7 1133 aa11.71□□□□□ -0.53
LDLR-212ENST00000560467 KCNE4Q8WWG9 221 aa11.71□□□□□ -0.53
LDLR-212ENST00000560467 RAB7BQ96AH8 199 aa11.71□□□□□ -0.53
LDLR-212ENST00000560467 ZNF578Q96N58 590 aaPredicted RBP11.71□□□□□ -0.53
LDLR-212ENST00000560467 DEPDC7Q96QD5 511 aa11.71□□□□□ -0.53
LDLR-212ENST00000560467 FAM167BQ9BTA0 163 aa11.71□□□□□ -0.53
LDLR-212ENST00000560467 ZFYVE1Q9HBF4 777 aa11.71□□□□□ -0.53
LDLR-212ENST00000560467 FETUBQ9UGM5 382 aa11.71□□□□□ -0.53
LDLR-212ENST00000560467 SLC24A2Q9UI40 661 aa11.71□□□□□ -0.53
LDLR-212ENST00000560467 ZFR2Q9UPR6 939 aaKnown RBP11.71□□□□□ -0.53
LDLR-212ENST00000560467 ATMQ13315 3056 aa11.7□□□□□ -0.54
LDLR-212ENST00000560467 A0A1W2PNU3 283 aaPredicted RBP11.7□□□□□ -0.54
LDLR-212ENST00000560467 TCRBV9S1A1TA0A576 114 aa11.7□□□□□ -0.54
LDLR-212ENST00000560467 CAPN8A6NHC0 703 aa11.7□□□□□ -0.54
LDLR-212ENST00000560467 C16orf96A6NNT2 1141 aa11.7□□□□□ -0.54
LDLR-212ENST00000560467 CYSRT1A8MQ03 144 aa11.7□□□□□ -0.54
LDLR-212ENST00000560467 POC1B-GALNT4F8VUJ3 575 aa11.7□□□□□ -0.54
LDLR-212ENST00000560467 K7ESM1 405 aa11.7□□□□□ -0.54
LDLR-212ENST00000560467 TRAFD1O14545 582 aaPredicted RBP11.7□□□□□ -0.54
LDLR-212ENST00000560467 RGS16O15492 202 aaPredicted RBP11.7□□□□□ -0.54
LDLR-212ENST00000560467 DXOO77932 396 aaKnown RBP11.7□□□□□ -0.54
LDLR-212ENST00000560467 VAPBO95292 243 aa11.7□□□□□ -0.54
LDLR-212ENST00000560467 PRLP01236 227 aa11.7□□□□□ -0.54
LDLR-212ENST00000560467 SLC4A1P02730 911 aa11.7□□□□□ -0.54
LDLR-212ENST00000560467 ZNF30P17039 623 aa11.7□□□□□ -0.54
LDLR-212ENST00000560467 HNRNPA2B1P22626 353 aaKnown RBP11.7□□□□□ -0.54
LDLR-212ENST00000560467 LSSP48449 732 aa11.7□□□□□ -0.54
LDLR-212ENST00000560467 UAP1Q16222 522 aaPredicted RBP11.7□□□□□ -0.54
LDLR-212ENST00000560467 AARS2Q5JTZ9 985 aaKnown RBP11.7□□□□□ -0.54
LDLR-212ENST00000560467 BROXQ5VW32 411 aa11.7□□□□□ -0.54
LDLR-212ENST00000560467 PTAR1Q7Z6K3 402 aaPredicted RBP11.7□□□□□ -0.54
LDLR-212ENST00000560467 MPP5Q8N3R9 675 aa11.7□□□□□ -0.54
LDLR-212ENST00000560467 PIH1D2Q8WWB5 315 aa11.7□□□□□ -0.54
LDLR-212ENST00000560467 SPOCK2Q92563 424 aa11.7□□□□□ -0.54
LDLR-212ENST00000560467 ECHDC3Q96DC8 303 aa11.7□□□□□ -0.54
LDLR-212ENST00000560467 C19orf43Q9BQ61 176 aa11.7□□□□□ -0.54
LDLR-212ENST00000560467 CDH19Q9H159 772 aa11.7□□□□□ -0.54
LDLR-212ENST00000560467 ACSS3Q9H6R3 686 aa11.7□□□□□ -0.54
LDLR-212ENST00000560467 POLR1BQ9H9Y6 1135 aa11.7□□□□□ -0.54
LDLR-212ENST00000560467 MED4Q9NPJ6 270 aa11.7□□□□□ -0.54
LDLR-212ENST00000560467 ASCL3Q9NQ33 180 aa11.7□□□□□ -0.54
LDLR-212ENST00000560467 DNAJC28Q9NX36 388 aa11.7□□□□□ -0.54
LDLR-212ENST00000560467 NLGN3Q9NZ94 848 aa11.7□□□□□ -0.54
LDLR-212ENST00000560467 PKD2L2Q9NZM6 624 aa11.7□□□□□ -0.54
LDLR-212ENST00000560467 APPL1Q9UKG1 709 aa11.7□□□□□ -0.54
LDLR-212ENST00000560467 VPS9D1Q9Y2B5 631 aa11.7□□□□□ -0.54
LDLR-212ENST00000560467 ZNF711Q9Y462 761 aa11.7□□□□□ -0.54
LDLR-212ENST00000560467 WASF2Q9Y6W5 498 aa11.7□□□□□ -0.54
LDLR-212ENST00000560467 SPTA1P02549 2419 aa11.7□□□□□ -0.54
LDLR-212ENST00000560467 SHROOM3Q8TF72 1996 aa11.69□□□□□ -0.54
LDLR-212ENST00000560467 COL6A6A6NMZ7 2263 aa11.69□□□□□ -0.54
LDLR-212ENST00000560467 IQANK1A0A1B0GTG1 560 aa11.69□□□□□ -0.54
LDLR-212ENST00000560467 PMS2P1A4D2B8 440 aa11.69□□□□□ -0.54
LDLR-212ENST00000560467 RGSL1A5PLK6 1076 aa11.69□□□□□ -0.54
LDLR-212ENST00000560467 MROH6A6NGR9 719 aa11.69□□□□□ -0.54
LDLR-212ENST00000560467 MAP2K7O14733 419 aa11.69□□□□□ -0.54
LDLR-212ENST00000560467 KLK10O43240 276 aa11.69□□□□□ -0.54
LDLR-212ENST00000560467 CDH16O75309 829 aa11.69□□□□□ -0.54
LDLR-212ENST00000560467 TCEA3O75764 348 aa11.69□□□□□ -0.54
LDLR-212ENST00000560467 KRT38O76015 456 aa11.69□□□□□ -0.54
LDLR-212ENST00000560467 PCDH8O95206 1070 aa11.69□□□□□ -0.54
LDLR-212ENST00000560467 PIRTP0C851 137 aa11.69□□□□□ -0.54
LDLR-212ENST00000560467 ALPPL2P10696 532 aa11.69□□□□□ -0.54
LDLR-212ENST00000560467 CNTFP26441 200 aa11.69□□□□□ -0.54
LDLR-212ENST00000560467 VIPR1P32241 457 aa11.69□□□□□ -0.54
LDLR-212ENST00000560467 HMGCLP35914 325 aa11.69□□□□□ -0.54
LDLR-212ENST00000560467 SERPINB9P50453 376 aa11.69□□□□□ -0.54
LDLR-212ENST00000560467 NEK3P51956 506 aa11.69□□□□□ -0.54
LDLR-212ENST00000560467 UCNP55089 124 aa11.69□□□□□ -0.54
LDLR-212ENST00000560467 RHDQ02161 417 aa11.69□□□□□ -0.54
LDLR-212ENST00000560467 LY6DQ14210 128 aa11.69□□□□□ -0.54
LDLR-212ENST00000560467 FGL2Q14314 439 aa11.69□□□□□ -0.54
LDLR-212ENST00000560467 CNGA3Q16281 694 aa11.69□□□□□ -0.54
LDLR-212ENST00000560467 TMEM259Q4ZIN3 620 aa11.69□□□□□ -0.54
LDLR-212ENST00000560467 STEAP4Q687X5 459 aa11.69□□□□□ -0.54
LDLR-212ENST00000560467 KIAA0930Q6ICG6 404 aaPredicted RBP11.69□□□□□ -0.54
LDLR-212ENST00000560467 NEPROQ6NW34 567 aa11.69□□□□□ -0.54
LDLR-212ENST00000560467 CES3Q6UWW8 571 aa11.69□□□□□ -0.54
LDLR-212ENST00000560467 Q6ZSR6 202 aa11.69□□□□□ -0.54
LDLR-212ENST00000560467 ERN2Q76MJ5 926 aaKnown RBP11.69□□□□□ -0.54
LDLR-212ENST00000560467 ABI3BPQ7Z7G0 1075 aa11.69□□□□□ -0.54
LDLR-212ENST00000560467 KCNMB4Q86W47 210 aa11.69□□□□□ -0.54
LDLR-212ENST00000560467 SLC26A11Q86WA9 606 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms