RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 PDCD4Q53EL6 469 aaKnown RBP7.2□□□□□ -1.26
VPS13C-206ENST00000558338 ZRANB3Q5FWF4 1079 aa7.2□□□□□ -1.26
VPS13C-206ENST00000558338 CXorf57Q6NSI4 855 aaKnown RBP7.2□□□□□ -1.26
VPS13C-206ENST00000558338 FBXL19Q6PCT2 694 aa7.2□□□□□ -1.26
VPS13C-206ENST00000558338 PRR23BQ6ZRT6 265 aa7.2□□□□□ -1.26
VPS13C-206ENST00000558338 FRA10AC1Q70Z53 315 aa7.2□□□□□ -1.26
VPS13C-206ENST00000558338 RPS27LQ71UM5 84 aaKnown RBP7.2□□□□□ -1.26
VPS13C-206ENST00000558338 FUNDC1Q8IVP5 155 aa7.2□□□□□ -1.26
VPS13C-206ENST00000558338 RNF168Q8IYW5 571 aaPredicted RBP7.2□□□□□ -1.26
VPS13C-206ENST00000558338 CRIPAKQ8N1N5 446 aa7.2□□□□□ -1.26
VPS13C-206ENST00000558338 TTC30BQ8N4P2 665 aa7.2□□□□□ -1.26
VPS13C-206ENST00000558338 PACRGLQ8N7B6 248 aa7.2□□□□□ -1.26
VPS13C-206ENST00000558338 EFHBQ8N7U6 833 aa7.2□□□□□ -1.26
VPS13C-206ENST00000558338 DCAF4L2Q8NA75 395 aa7.2□□□□□ -1.26
VPS13C-206ENST00000558338 DDI1Q8WTU0 396 aa7.2□□□□□ -1.26
VPS13C-206ENST00000558338 RELTQ969Z4 430 aa7.2□□□□□ -1.26
VPS13C-206ENST00000558338 ATP6V1E2Q96A05 226 aa7.2□□□□□ -1.26
VPS13C-206ENST00000558338 FUBP1Q96AE4 644 aaKnown RBP7.2□□□□□ -1.26
VPS13C-206ENST00000558338 LINGO1Q96FE5 620 aa7.2□□□□□ -1.26
VPS13C-206ENST00000558338 PDLIM5Q96HC4 596 aaKnown RBP7.2□□□□□ -1.26
VPS13C-206ENST00000558338 C3orf30Q96M34 536 aa7.2□□□□□ -1.26
VPS13C-206ENST00000558338 GPATCH1Q9BRR8 931 aaKnown RBP7.2□□□□□ -1.26
VPS13C-206ENST00000558338 HGH1Q9BTY7 390 aa7.2□□□□□ -1.26
VPS13C-206ENST00000558338 HERC2P3Q9BVR0 1158 aa7.2□□□□□ -1.26
VPS13C-206ENST00000558338 TRIM4Q9C037 500 aa7.2□□□□□ -1.26
VPS13C-206ENST00000558338 C12orf49Q9H741 205 aa7.2□□□□□ -1.26
VPS13C-206ENST00000558338 MAGEE1Q9HCI5 957 aa7.2□□□□□ -1.26
VPS13C-206ENST00000558338 VCX3AQ9NNX9 186 aa7.2□□□□□ -1.26
VPS13C-206ENST00000558338 ARMC1Q9NVT9 282 aa7.2□□□□□ -1.26
VPS13C-206ENST00000558338 AIG1Q9NVV5 245 aa7.2□□□□□ -1.26
VPS13C-206ENST00000558338 ZIM2Q9NZV7 527 aa7.2□□□□□ -1.26
VPS13C-206ENST00000558338 SUN2Q9UH99 717 aa7.2□□□□□ -1.26
VPS13C-206ENST00000558338 FKBPLQ9UIM3 349 aa7.2□□□□□ -1.26
VPS13C-206ENST00000558338 PCTPQ9UKL6 214 aa7.2□□□□□ -1.26
VPS13C-206ENST00000558338 YIPF1Q9Y548 306 aa7.2□□□□□ -1.26
VPS13C-206ENST00000558338 PLXNA4Q9HCM2 1894 aa7.2□□□□□ -1.26
VPS13C-206ENST00000558338 ATP6AP2A0A1C7CYW4 349 aa7.19□□□□□ -1.26
VPS13C-206ENST00000558338 CFAP99D6REC4 459 aa7.19□□□□□ -1.26
VPS13C-206ENST00000558338 H0Y626 953 aa7.19□□□□□ -1.26
VPS13C-206ENST00000558338 IFRD1O00458 451 aaPredicted RBP7.19□□□□□ -1.26
VPS13C-206ENST00000558338 PRMT5O14744 637 aaPredicted RBP7.19□□□□□ -1.26
VPS13C-206ENST00000558338 HNRNPRO43390 633 aaKnown RBP7.19□□□□□ -1.26
VPS13C-206ENST00000558338 ATP6AP2O75787 350 aa7.19□□□□□ -1.26
VPS13C-206ENST00000558338 RNASEH2AO75792 299 aaKnown RBP7.19□□□□□ -1.26
VPS13C-206ENST00000558338 ABLIM3O94929 683 aa7.19□□□□□ -1.26
VPS13C-206ENST00000558338 PRLP01236 227 aa7.19□□□□□ -1.26
VPS13C-206ENST00000558338 SOD2P04179 222 aa7.19□□□□□ -1.26
VPS13C-206ENST00000558338 CYBBP04839 570 aa7.19□□□□□ -1.26
VPS13C-206ENST00000558338 FAM58BPP0C7Q3 252 aa7.19□□□□□ -1.26
VPS13C-206ENST00000558338 IRF1P10914 325 aa7.19□□□□□ -1.26
VPS13C-206ENST00000558338 ZNF7P17097 686 aaPredicted RBP7.19□□□□□ -1.26
VPS13C-206ENST00000558338 PSMC3P17980 439 aa7.19□□□□□ -1.26
VPS13C-206ENST00000558338 IL10P22301 178 aa7.19□□□□□ -1.26
VPS13C-206ENST00000558338 RPS3P23396 243 aaKnown RBP eCLIP7.19□□□□□ -1.26
VPS13C-206ENST00000558338 PSMA4P25789 261 aaKnown RBP7.19□□□□□ -1.26
VPS13C-206ENST00000558338 RGS4P49798 205 aa7.19□□□□□ -1.26
VPS13C-206ENST00000558338 RHOAP61586 193 aa7.19□□□□□ -1.26
VPS13C-206ENST00000558338 ERVK-8P63133 956 aa7.19□□□□□ -1.26
VPS13C-206ENST00000558338 CAP1Q01518 475 aa7.19□□□□□ -1.26
VPS13C-206ENST00000558338 TWF1Q12792 350 aa7.19□□□□□ -1.26
VPS13C-206ENST00000558338 TRAF2Q12933 501 aa7.19□□□□□ -1.26
VPS13C-206ENST00000558338 RALGDSQ12967 914 aa7.19□□□□□ -1.26
VPS13C-206ENST00000558338 TLR1Q15399 786 aa7.19□□□□□ -1.26
VPS13C-206ENST00000558338 CRY1Q16526 586 aa7.19□□□□□ -1.26
VPS13C-206ENST00000558338 AASDHQ4L235 1098 aaPredicted RBP7.19□□□□□ -1.26
VPS13C-206ENST00000558338 XKR7Q5GH72 579 aa7.19□□□□□ -1.26
VPS13C-206ENST00000558338 CTSL3PQ5NE16 218 aa7.19□□□□□ -1.26
VPS13C-206ENST00000558338 C6orf10Q5SRN2 563 aa7.19□□□□□ -1.26
VPS13C-206ENST00000558338 ARMC12Q5T9G4 340 aa7.19□□□□□ -1.26
VPS13C-206ENST00000558338 IL23RQ5VWK5 629 aa7.19□□□□□ -1.26
VPS13C-206ENST00000558338 LCN8Q6JVE9 175 aa7.19□□□□□ -1.26
VPS13C-206ENST00000558338 BLOC1S3Q6QNY0 202 aa7.19□□□□□ -1.26
VPS13C-206ENST00000558338 GPRIN3Q6ZVF9 776 aa7.19□□□□□ -1.26
VPS13C-206ENST00000558338 TAS1R1Q7RTX1 841 aa7.19□□□□□ -1.26
VPS13C-206ENST00000558338 TMEM173Q86WV6 379 aaPredicted RBP7.19□□□□□ -1.26
VPS13C-206ENST00000558338 GALNT13Q8IUC8 556 aa7.19□□□□□ -1.26
VPS13C-206ENST00000558338 LILRA2Q8N149 483 aa7.19□□□□□ -1.26
VPS13C-206ENST00000558338 GALNT15Q8N3T1 639 aa7.19□□□□□ -1.26
VPS13C-206ENST00000558338 ANKFN1Q8N957 763 aa7.19□□□□□ -1.26
VPS13C-206ENST00000558338 OR9I1Q8NGQ6 314 aa7.19□□□□□ -1.26
VPS13C-206ENST00000558338 ZNF461Q8TAF7 563 aa7.19□□□□□ -1.26
VPS13C-206ENST00000558338 CD200R1Q8TD46 325 aa7.19□□□□□ -1.26
VPS13C-206ENST00000558338 BCL7CQ8WUZ0 217 aaPredicted RBP7.19□□□□□ -1.26
VPS13C-206ENST00000558338 MYO19Q96H55 970 aa7.19□□□□□ -1.26
VPS13C-206ENST00000558338 IGSF21Q96ID5 467 aa7.19□□□□□ -1.26
VPS13C-206ENST00000558338 EXOC2Q96KP1 924 aa7.19□□□□□ -1.26
VPS13C-206ENST00000558338 ZNF597Q96LX8 424 aa7.19□□□□□ -1.26
VPS13C-206ENST00000558338 BIRC8Q96P09 236 aa7.19□□□□□ -1.26
VPS13C-206ENST00000558338 SPATA16Q9BXB7 569 aa7.19□□□□□ -1.26
VPS13C-206ENST00000558338 GPR63Q9BZJ6 419 aa7.19□□□□□ -1.26
VPS13C-206ENST00000558338 SEMA4BQ9NPR2 832 aaPredicted RBP7.19□□□□□ -1.26
VPS13C-206ENST00000558338 PAPOLBQ9NRJ5 636 aaKnown RBP7.19□□□□□ -1.26
VPS13C-206ENST00000558338 CD274Q9NZQ7 290 aa7.19□□□□□ -1.26
VPS13C-206ENST00000558338 ACTR3BQ9P1U1 418 aa7.19□□□□□ -1.26
VPS13C-206ENST00000558338 LHX3Q9UBR4 397 aa7.19□□□□□ -1.26
VPS13C-206ENST00000558338 GNPTGQ9UJJ9 305 aa7.19□□□□□ -1.26
VPS13C-206ENST00000558338 LEF1Q9UJU2 399 aaPredicted RBP7.19□□□□□ -1.26
VPS13C-206ENST00000558338 LSM7Q9UK45 103 aaKnown RBP7.19□□□□□ -1.26
VPS13C-206ENST00000558338 CNOT6Q9ULM6 557 aaKnown RBP7.19□□□□□ -1.26
VPS13C-206ENST00000558338 MED16Q9Y2X0 877 aa7.19□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms