RNA–Protein interactions for RNA: ENST00000556973.1

LINC00239-201, long intergenic non-protein coding RNA 239, humanhuman

TSL 3 BASIC

Gene LINC00239, Length 639 nt, Biotype lincRNA, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00239-201ENST00000556973 SNX2O60749 519 aa10.53□□□□□ -0.72
LINC00239-201ENST00000556973 TCEA3O75764 348 aa10.53□□□□□ -0.72
LINC00239-201ENST00000556973 POP7O75817 140 aaKnown RBP10.53□□□□□ -0.72
LINC00239-201ENST00000556973 F3P13726 295 aa10.53□□□□□ -0.72
LINC00239-201ENST00000556973 VCLP18206 1134 aa10.53□□□□□ -0.72
LINC00239-201ENST00000556973 CASQ1P31415 396 aa10.53□□□□□ -0.72
LINC00239-201ENST00000556973 AKT1P31749 480 aa10.53□□□□□ -0.72
LINC00239-201ENST00000556973 MAGEA6P43360 314 aa10.53□□□□□ -0.72
LINC00239-201ENST00000556973 GPR3P46089 330 aa10.53□□□□□ -0.72
LINC00239-201ENST00000556973 VPS41P49754 854 aa10.53□□□□□ -0.72
LINC00239-201ENST00000556973 ETF1P62495 437 aaKnown RBP10.53□□□□□ -0.72
LINC00239-201ENST00000556973 CACNG1Q06432 222 aa10.53□□□□□ -0.72
LINC00239-201ENST00000556973 BIRC2Q13490 618 aa10.53□□□□□ -0.72
LINC00239-201ENST00000556973 KCNJ11Q14654 390 aa10.53□□□□□ -0.72
LINC00239-201ENST00000556973 CCDC38Q502W7 563 aa10.53□□□□□ -0.72
LINC00239-201ENST00000556973 ZRANB3Q5FWF4 1079 aa10.53□□□□□ -0.72
LINC00239-201ENST00000556973 ARMC3Q5W041 872 aa10.53□□□□□ -0.72
LINC00239-201ENST00000556973 IYDQ6PHW0 289 aa10.53□□□□□ -0.72
LINC00239-201ENST00000556973 TMEM220Q6QAJ8 160 aa10.53□□□□□ -0.72
LINC00239-201ENST00000556973 CRTC3Q6UUV7 619 aa10.53□□□□□ -0.72
LINC00239-201ENST00000556973 AMZ2Q86W34 360 aa10.53□□□□□ -0.72
LINC00239-201ENST00000556973 TRAPPC5Q8IUR0 188 aa10.53□□□□□ -0.72
LINC00239-201ENST00000556973 SFTPA2Q8IWL1 248 aa10.53□□□□□ -0.72
LINC00239-201ENST00000556973 NXPE1Q8N323 547 aa10.53□□□□□ -0.72
LINC00239-201ENST00000556973 SLCO2A1Q92959 643 aa10.53□□□□□ -0.72
LINC00239-201ENST00000556973 CCDC74AQ96AQ1 378 aa10.53□□□□□ -0.72
LINC00239-201ENST00000556973 GRAMD1AQ96CP6 724 aa10.53□□□□□ -0.72
LINC00239-201ENST00000556973 DCUN1D1Q96GG9 259 aa10.53□□□□□ -0.72
LINC00239-201ENST00000556973 SGSM3Q96HU1 749 aa10.53□□□□□ -0.72
LINC00239-201ENST00000556973 CAPZA3Q96KX2 299 aa10.53□□□□□ -0.72
LINC00239-201ENST00000556973 RUNDC3BQ96NL0 473 aa10.53□□□□□ -0.72
LINC00239-201ENST00000556973 DEPDC7Q96QD5 511 aa10.53□□□□□ -0.72
LINC00239-201ENST00000556973 COPS8Q99627 209 aa10.53□□□□□ -0.72
LINC00239-201ENST00000556973 DDX47Q9H0S4 455 aaKnown RBP10.53□□□□□ -0.72
LINC00239-201ENST00000556973 CHRAC1Q9NRG0 131 aa10.53□□□□□ -0.72
LINC00239-201ENST00000556973 TBC1D29Q9UFV1 150 aa10.53□□□□□ -0.72
LINC00239-201ENST00000556973 PCYOX1Q9UHG3 505 aa10.53□□□□□ -0.72
LINC00239-201ENST00000556973 TCAF1Q9Y4C2 921 aa10.53□□□□□ -0.72
LINC00239-201ENST00000556973 CNOT1A5YKK6 2376 aaKnown RBP10.52□□□□□ -0.73
LINC00239-201ENST00000556973 BPTFQ12830 3046 aa10.52□□□□□ -0.73
LINC00239-201ENST00000556973 TRBV23OR9-2A0A075B6M9 112 aa10.52□□□□□ -0.73
LINC00239-201ENST00000556973 TRBV5-4A0A0C4DH59 114 aa10.52□□□□□ -0.73
LINC00239-201ENST00000556973 KIR2DS5A0A0G2JLQ3 304 aa10.52□□□□□ -0.73
LINC00239-201ENST00000556973 A0A0G2JNG1 304 aa10.52□□□□□ -0.73
LINC00239-201ENST00000556973 TCRBV7S3A2A0A539 114 aa10.52□□□□□ -0.73
LINC00239-201ENST00000556973 OR2AG2A6NM03 316 aa10.52□□□□□ -0.73
LINC00239-201ENST00000556973 CFAP99D6REC4 459 aa10.52□□□□□ -0.73
LINC00239-201ENST00000556973 CCDC188H7C350 402 aa10.52□□□□□ -0.73
LINC00239-201ENST00000556973 KIR2DS3K7RE56 304 aa10.52□□□□□ -0.73
LINC00239-201ENST00000556973 NTN3O00634 580 aaPredicted RBP10.52□□□□□ -0.73
LINC00239-201ENST00000556973 PPM1DO15297 605 aa10.52□□□□□ -0.73
LINC00239-201ENST00000556973 EML2O95834 649 aa10.52□□□□□ -0.73
LINC00239-201ENST00000556973 MLNP12872 115 aa10.52□□□□□ -0.73
LINC00239-201ENST00000556973 ATP1B2P14415 290 aaPredicted RBP10.52□□□□□ -0.73
LINC00239-201ENST00000556973 XRCC1P18887 633 aaPredicted RBP10.52□□□□□ -0.73
LINC00239-201ENST00000556973 IDSP22304 550 aa10.52□□□□□ -0.73
LINC00239-201ENST00000556973 ACRV1P26436 265 aa10.52□□□□□ -0.73
LINC00239-201ENST00000556973 FASLGP48023 281 aa10.52□□□□□ -0.73
LINC00239-201ENST00000556973 MAZP56270 477 aaKnown RBP10.52□□□□□ -0.73
LINC00239-201ENST00000556973 SESN2P58004 480 aaPredicted RBP10.52□□□□□ -0.73
LINC00239-201ENST00000556973 CCL7P80098 99 aa10.52□□□□□ -0.73
LINC00239-201ENST00000556973 B4GALNT1Q00973 533 aa10.52□□□□□ -0.73
LINC00239-201ENST00000556973 ACVR1Q04771 509 aa10.52□□□□□ -0.73
LINC00239-201ENST00000556973 DMPKQ09013 629 aa10.52□□□□□ -0.73
LINC00239-201ENST00000556973 CAMK2BQ13554 666 aa10.52□□□□□ -0.73
LINC00239-201ENST00000556973 SPIDRQ14159 915 aa10.52□□□□□ -0.73
LINC00239-201ENST00000556973 KIR2DS5Q14953 304 aa10.52□□□□□ -0.73
LINC00239-201ENST00000556973 NR1D2Q14995 579 aa10.52□□□□□ -0.73
LINC00239-201ENST00000556973 PPP1R7Q15435 360 aa10.52□□□□□ -0.73
LINC00239-201ENST00000556973 PLA2G4EQ3MJ16 856 aa10.52□□□□□ -0.73
LINC00239-201ENST00000556973 FNBP1LQ5T0N5 605 aa10.52□□□□□ -0.73
LINC00239-201ENST00000556973 LYPLAL1Q5VWZ2 237 aa10.52□□□□□ -0.73
LINC00239-201ENST00000556973 ABRAXAS1Q6UWZ7 409 aa10.52□□□□□ -0.73
LINC00239-201ENST00000556973 WASH2PQ6VEQ5 465 aa10.52□□□□□ -0.73
LINC00239-201ENST00000556973 RBM44Q6ZP01 1051 aaKnown RBP10.52□□□□□ -0.73
LINC00239-201ENST00000556973 TAS2R42Q7RTR8 314 aa10.52□□□□□ -0.73
LINC00239-201ENST00000556973 ZNF438Q7Z4V0 828 aa10.52□□□□□ -0.73
LINC00239-201ENST00000556973 C11orf96Q7Z7L8 435 aa10.52□□□□□ -0.73
LINC00239-201ENST00000556973 PCGF5Q86SE9 256 aa10.52□□□□□ -0.73
LINC00239-201ENST00000556973 SLC9B2Q86UD5 537 aa10.52□□□□□ -0.73
LINC00239-201ENST00000556973 CCNJLQ8IV13 435 aa10.52□□□□□ -0.73
LINC00239-201ENST00000556973 C17orf53Q8N3J3 647 aaPredicted RBP10.52□□□□□ -0.73
LINC00239-201ENST00000556973 SFRP1Q8N474 314 aa10.52□□□□□ -0.73
LINC00239-201ENST00000556973 AVL9Q8NBF6 648 aa10.52□□□□□ -0.73
LINC00239-201ENST00000556973 MCUQ8NE86 351 aa10.52□□□□□ -0.73
LINC00239-201ENST00000556973 OR13J1Q8NGT2 312 aa10.52□□□□□ -0.73
LINC00239-201ENST00000556973 PATE1Q8WXA2 126 aa10.52□□□□□ -0.73
LINC00239-201ENST00000556973 CPT1BQ92523 772 aa10.52□□□□□ -0.73
LINC00239-201ENST00000556973 GATA6Q92908 595 aa10.52□□□□□ -0.73
LINC00239-201ENST00000556973 HDAC10Q969S8 669 aa10.52□□□□□ -0.73
LINC00239-201ENST00000556973 SH3KBP1Q96B97 665 aa10.52□□□□□ -0.73
LINC00239-201ENST00000556973 SGF29Q96ES7 293 aa10.52□□□□□ -0.73
LINC00239-201ENST00000556973 TTC1Q99614 292 aa10.52□□□□□ -0.73
LINC00239-201ENST00000556973 NRSN2Q9GZP1 204 aa10.52□□□□□ -0.73
LINC00239-201ENST00000556973 LRRN3Q9H3W5 708 aa10.52□□□□□ -0.73
LINC00239-201ENST00000556973 STN1Q9H668 368 aaKnown RBP10.52□□□□□ -0.73
LINC00239-201ENST00000556973 SARS2Q9NP81 518 aaKnown RBP10.52□□□□□ -0.73
LINC00239-201ENST00000556973 WASH6PQ9NQA3 447 aa10.52□□□□□ -0.73
LINC00239-201ENST00000556973 ZDHHC3Q9NYG2 299 aa10.52□□□□□ -0.73
LINC00239-201ENST00000556973 RABGEF1Q9UJ41 708 aa10.52□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms