RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 F8W810 466 aa5.38□□□□□ -1.55
LIMA1-212ENST00000552491 CDC7O00311 574 aa5.38□□□□□ -1.55
LIMA1-212ENST00000552491 MUSKO15146 869 aa5.38□□□□□ -1.55
LIMA1-212ENST00000552491 FGF10O15520 208 aaPredicted RBP5.38□□□□□ -1.55
LIMA1-212ENST00000552491 PAPSS2O95340 614 aaPredicted RBP5.38□□□□□ -1.55
LIMA1-212ENST00000552491 LDLRP01130 860 aa5.38□□□□□ -1.55
LIMA1-212ENST00000552491 CYBBP04839 570 aa5.38□□□□□ -1.55
LIMA1-212ENST00000552491 ALDH2P05091 517 aa5.38□□□□□ -1.55
LIMA1-212ENST00000552491 UMPSP11172 480 aa5.38□□□□□ -1.55
LIMA1-212ENST00000552491 MBL2P11226 248 aaPredicted RBP5.38□□□□□ -1.55
LIMA1-212ENST00000552491 NCF1P14598 390 aaPredicted RBP5.38□□□□□ -1.55
LIMA1-212ENST00000552491 CCNA2P20248 432 aa5.38□□□□□ -1.55
LIMA1-212ENST00000552491 EEF1B2P24534 225 aaKnown RBP5.38□□□□□ -1.55
LIMA1-212ENST00000552491 IDUAP35475 653 aa5.38□□□□□ -1.55
LIMA1-212ENST00000552491 BRCC3P46736 316 aa5.38□□□□□ -1.55
LIMA1-212ENST00000552491 GSTM4Q03013 218 aa5.38□□□□□ -1.55
LIMA1-212ENST00000552491 BFSP2Q13515 415 aa5.38□□□□□ -1.55
LIMA1-212ENST00000552491 CBX2Q14781 532 aaPredicted RBP5.38□□□□□ -1.55
LIMA1-212ENST00000552491 SPCS2Q15005 226 aa5.38□□□□□ -1.55
LIMA1-212ENST00000552491 RPS6KA2Q15349 733 aa5.38□□□□□ -1.55
LIMA1-212ENST00000552491 TSNQ15631 228 aaKnown RBP5.38□□□□□ -1.55
LIMA1-212ENST00000552491 NKG7Q16617 165 aa5.38□□□□□ -1.55
LIMA1-212ENST00000552491 FSCN1Q16658 493 aaKnown RBP5.38□□□□□ -1.55
LIMA1-212ENST00000552491 DPY19L1Q2PZI1 675 aa5.38□□□□□ -1.55
LIMA1-212ENST00000552491 PDCD4Q53EL6 469 aaKnown RBP5.38□□□□□ -1.55
LIMA1-212ENST00000552491 ALFQ53S48 1182 aa5.38□□□□□ -1.55
LIMA1-212ENST00000552491 FAM171BQ6P995 826 aa5.38□□□□□ -1.55
LIMA1-212ENST00000552491 C16orf87Q6PH81 154 aa5.38□□□□□ -1.55
LIMA1-212ENST00000552491 ZNF773Q6PK81 442 aa5.38□□□□□ -1.55
LIMA1-212ENST00000552491 LIAT1Q6ZQX7 453 aa5.38□□□□□ -1.55
LIMA1-212ENST00000552491 PIWIL3Q7Z3Z3 882 aaKnown RBP5.38□□□□□ -1.55
LIMA1-212ENST00000552491 SYVN1Q86TM6 617 aa5.38□□□□□ -1.55
LIMA1-212ENST00000552491 IGFN1Q86VF2 1251 aa5.38□□□□□ -1.55
LIMA1-212ENST00000552491 SNX29P2Q8IUI4 249 aa5.38□□□□□ -1.55
LIMA1-212ENST00000552491 RNF168Q8IYW5 571 aaPredicted RBP5.38□□□□□ -1.55
LIMA1-212ENST00000552491 TBC1D21Q8IYX1 336 aa5.38□□□□□ -1.55
LIMA1-212ENST00000552491 GPC2Q8N158 579 aa5.38□□□□□ -1.55
LIMA1-212ENST00000552491 TMEM86AQ8N2M4 240 aa5.38□□□□□ -1.55
LIMA1-212ENST00000552491 DTWD1Q8N5C7 304 aa5.38□□□□□ -1.55
LIMA1-212ENST00000552491 GPRC5AQ8NFJ5 357 aa5.38□□□□□ -1.55
LIMA1-212ENST00000552491 ARRDC2Q8TBH0 407 aa5.38□□□□□ -1.55
LIMA1-212ENST00000552491 TSPEARQ8WU66 669 aa5.38□□□□□ -1.55
LIMA1-212ENST00000552491 PSMG2Q969U7 264 aa5.38□□□□□ -1.55
LIMA1-212ENST00000552491 FKBP10Q96AY3 582 aa5.38□□□□□ -1.55
LIMA1-212ENST00000552491 PKMYT1Q99640 499 aa5.38□□□□□ -1.55
LIMA1-212ENST00000552491 CATSPERBQ9H7T0 1116 aa5.38□□□□□ -1.55
LIMA1-212ENST00000552491 SP110Q9HB58 689 aa5.38□□□□□ -1.55
LIMA1-212ENST00000552491 PALMDQ9NP74 551 aa5.38□□□□□ -1.55
LIMA1-212ENST00000552491 AIG1Q9NVV5 245 aa5.38□□□□□ -1.55
LIMA1-212ENST00000552491 PKD2L2Q9NZM6 624 aa5.38□□□□□ -1.55
LIMA1-212ENST00000552491 UXTQ9UBK9 157 aaPredicted RBP5.38□□□□□ -1.55
LIMA1-212ENST00000552491 PAIP2BQ9ULR5 123 aaKnown RBP5.38□□□□□ -1.55
LIMA1-212ENST00000552491 ANKRD36A6QL64 1941 aa5.37□□□□□ -1.55
LIMA1-212ENST00000552491 C1orf232A0A0U1RR37 186 aa5.37□□□□□ -1.55
LIMA1-212ENST00000552491 IQCA1LA6NCM1 817 aa5.37□□□□□ -1.55
LIMA1-212ENST00000552491 H0YAE9 185 aa5.37□□□□□ -1.55
LIMA1-212ENST00000552491 TNPO2O14787 897 aaKnown RBP5.37□□□□□ -1.55
LIMA1-212ENST00000552491 CD3EAPO15446 510 aaKnown RBP5.37□□□□□ -1.55
LIMA1-212ENST00000552491 XYLBO75191 536 aa5.37□□□□□ -1.55
LIMA1-212ENST00000552491 EEDO75530 441 aaKnown RBP5.37□□□□□ -1.55
LIMA1-212ENST00000552491 ALPLP05186 524 aa5.37□□□□□ -1.55
LIMA1-212ENST00000552491 SLC2A3P11169 496 aa5.37□□□□□ -1.55
LIMA1-212ENST00000552491 IDO1P14902 403 aa5.37□□□□□ -1.55
LIMA1-212ENST00000552491 JUNBP17275 347 aaPredicted RBP5.37□□□□□ -1.55
LIMA1-212ENST00000552491 CRHBPP24387 322 aa5.37□□□□□ -1.55
LIMA1-212ENST00000552491 MAP4P27816 1152 aaKnown RBP5.37□□□□□ -1.55
LIMA1-212ENST00000552491 HTR7P34969 479 aa5.37□□□□□ -1.55
LIMA1-212ENST00000552491 PIGAP37287 484 aa5.37□□□□□ -1.55
LIMA1-212ENST00000552491 OPRL1P41146 370 aa5.37□□□□□ -1.55
LIMA1-212ENST00000552491 SCNN1GP51170 649 aa5.37□□□□□ -1.55
LIMA1-212ENST00000552491 SUOXP51687 545 aa5.37□□□□□ -1.55
LIMA1-212ENST00000552491 PLA2G16P53816 162 aa5.37□□□□□ -1.55
LIMA1-212ENST00000552491 ARSFP54793 590 aa5.37□□□□□ -1.55
LIMA1-212ENST00000552491 TMBIM6P55061 237 aa5.37□□□□□ -1.55
LIMA1-212ENST00000552491 MTPNP58546 118 aa5.37□□□□□ -1.55
LIMA1-212ENST00000552491 PLIN5Q00G26 463 aa5.37□□□□□ -1.55
LIMA1-212ENST00000552491 CACNB2Q08289 660 aaPredicted RBP5.37□□□□□ -1.55
LIMA1-212ENST00000552491 PPP1R8Q12972 351 aaKnown RBP5.37□□□□□ -1.55
LIMA1-212ENST00000552491 NR1D2Q14995 579 aa5.37□□□□□ -1.55
LIMA1-212ENST00000552491 FXNQ16595 210 aa5.37□□□□□ -1.55
LIMA1-212ENST00000552491 XKR7Q5GH72 579 aa5.37□□□□□ -1.55
LIMA1-212ENST00000552491 ZNF697Q5TEC3 545 aa5.37□□□□□ -1.55
LIMA1-212ENST00000552491 EGFLAMQ63HQ2 1017 aa5.37□□□□□ -1.55
LIMA1-212ENST00000552491 TIGD7Q6NT04 549 aaPredicted RBP5.37□□□□□ -1.55
LIMA1-212ENST00000552491 PAQR3Q6TCH7 311 aa5.37□□□□□ -1.55
LIMA1-212ENST00000552491 CD300LGQ6UXG3 332 aa5.37□□□□□ -1.55
LIMA1-212ENST00000552491 DLEU7Q6UYE1 221 aa5.37□□□□□ -1.55
LIMA1-212ENST00000552491 R3HCC1LQ7Z5L2 792 aaKnown RBP5.37□□□□□ -1.55
LIMA1-212ENST00000552491 CIR1Q86X95 450 aaPredicted RBP5.37□□□□□ -1.55
LIMA1-212ENST00000552491 ZNF683Q8IZ20 524 aa5.37□□□□□ -1.55
LIMA1-212ENST00000552491 TMEM199Q8N511 208 aa5.37□□□□□ -1.55
LIMA1-212ENST00000552491 LEMD2Q8NC56 503 aa5.37□□□□□ -1.55
LIMA1-212ENST00000552491 NPLOC4Q8TAT6 608 aa5.37□□□□□ -1.55
LIMA1-212ENST00000552491 PROKR1Q8TCW9 393 aa5.37□□□□□ -1.55
LIMA1-212ENST00000552491 TMBIM1Q969X1 311 aa5.37□□□□□ -1.55
LIMA1-212ENST00000552491 NSMCE3Q96MG7 304 aa5.37□□□□□ -1.55
LIMA1-212ENST00000552491 PPM1MQ96MI6 270 aa5.37□□□□□ -1.55
LIMA1-212ENST00000552491 SMIM14Q96QK8 99 aa5.37□□□□□ -1.55
LIMA1-212ENST00000552491 AGO3Q9H9G7 860 aaKnown RBP5.37□□□□□ -1.55
LIMA1-212ENST00000552491 SMURF2Q9HAU4 748 aa5.37□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms