RNA–Protein interactions for RNA: ENST00000548945.6

PTCH1-218, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 243 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-218ENST00000548945 PRSS42Q7Z5A4 293 aa12.66□□□□□ -0.38
PTCH1-218ENST00000548945 TMC3Q7Z5M5 1100 aa12.66□□□□□ -0.38
PTCH1-218ENST00000548945 LRRTM4Q86VH4 590 aa12.66□□□□□ -0.38
PTCH1-218ENST00000548945 TRIM48Q8IWZ4 208 aa12.66□□□□□ -0.38
PTCH1-218ENST00000548945 CLEC18CQ8NCF0 446 aa12.66□□□□□ -0.38
PTCH1-218ENST00000548945 GPR26Q8NDV2 337 aa12.66□□□□□ -0.38
PTCH1-218ENST00000548945 IMP4Q96G21 291 aaKnown RBP12.66□□□□□ -0.38
PTCH1-218ENST00000548945 SLC25A51Q9H1U9 297 aa12.66□□□□□ -0.38
PTCH1-218ENST00000548945 ZNF71Q9NQZ8 489 aaPredicted RBP12.66□□□□□ -0.38
PTCH1-218ENST00000548945 SCHIP1Q9P0W5 487 aaPredicted RBP12.66□□□□□ -0.38
PTCH1-218ENST00000548945 ZNF624Q9P2J8 865 aaPredicted RBP12.66□□□□□ -0.38
PTCH1-218ENST00000548945 ANKMY1Q9P2S6 941 aa12.66□□□□□ -0.38
PTCH1-218ENST00000548945 EPHA6Q9UF33 1036 aa12.66□□□□□ -0.38
PTCH1-218ENST00000548945 KCND3Q9UK17 655 aa12.66□□□□□ -0.38
PTCH1-218ENST00000548945 FGF5P12034 268 aa12.65□□□□□ -0.38
PTCH1-218ENST00000548945 AMD1P17707 334 aa12.65□□□□□ -0.38
PTCH1-218ENST00000548945 HNRNPH3P31942 346 aaKnown RBP12.65□□□□□ -0.38
PTCH1-218ENST00000548945 DLSTP36957 453 aa12.65□□□□□ -0.38
PTCH1-218ENST00000548945 CAPZBP47756 277 aa12.65□□□□□ -0.38
PTCH1-218ENST00000548945 UBASH3AP57075 661 aa12.65□□□□□ -0.38
PTCH1-218ENST00000548945 FOXM1Q08050 763 aa12.65□□□□□ -0.38
PTCH1-218ENST00000548945 KLRB1Q12918 225 aa12.65□□□□□ -0.38
PTCH1-218ENST00000548945 GALNT3Q14435 633 aa12.65□□□□□ -0.38
PTCH1-218ENST00000548945 PDK1Q15118 436 aa12.65□□□□□ -0.38
PTCH1-218ENST00000548945 LARP7Q4G0J3 582 aaKnown RBP eCLIP12.65□□□□□ -0.38
PTCH1-218ENST00000548945 SLC9A4Q6AI14 798 aa12.65□□□□□ -0.38
PTCH1-218ENST00000548945 TCTN3Q6NUS6 607 aa12.65□□□□□ -0.38
PTCH1-218ENST00000548945 NT5DC3Q86UY8 548 aa12.65□□□□□ -0.38
PTCH1-218ENST00000548945 CPNE8Q86YQ8 564 aa12.65□□□□□ -0.38
PTCH1-218ENST00000548945 PLD5Q8N7P1 536 aa12.65□□□□□ -0.38
PTCH1-218ENST00000548945 LRRN4Q8WUT4 740 aa12.65□□□□□ -0.38
PTCH1-218ENST00000548945 CTNNBL1Q8WYA6 563 aaPredicted RBP12.65□□□□□ -0.38
PTCH1-218ENST00000548945 KLHL6Q8WZ60 621 aa12.65□□□□□ -0.38
PTCH1-218ENST00000548945 TADA1Q96BN2 335 aa12.65□□□□□ -0.38
PTCH1-218ENST00000548945 ZDHHC12Q96GR4 267 aa12.65□□□□□ -0.38
PTCH1-218ENST00000548945 TGM7Q96PF1 710 aa12.65□□□□□ -0.38
PTCH1-218ENST00000548945 VPS35Q96QK1 796 aa12.65□□□□□ -0.38
PTCH1-218ENST00000548945 GPR63Q9BZJ6 419 aa12.65□□□□□ -0.38
PTCH1-218ENST00000548945 RAB33BQ9H082 229 aa12.65□□□□□ -0.38
PTCH1-218ENST00000548945 BRD8Q9H0E9 1235 aa12.65□□□□□ -0.38
PTCH1-218ENST00000548945 SLC40A1Q9NP59 571 aa12.65□□□□□ -0.38
PTCH1-218ENST00000548945 SLC23A2Q9UGH3 650 aa12.65□□□□□ -0.38
PTCH1-218ENST00000548945 ZNF711Q9Y462 761 aa12.65□□□□□ -0.38
PTCH1-218ENST00000548945 PCDHGA6Q9Y5G7 932 aa12.65□□□□□ -0.38
PTCH1-218ENST00000548945 KCNMB2Q9Y691 235 aa12.65□□□□□ -0.38
PTCH1-218ENST00000548945 SLC30A1Q9Y6M5 507 aa12.65□□□□□ -0.38
PTCH1-218ENST00000548945 ICE1Q9Y2F5 2266 aa12.65□□□□□ -0.38
PTCH1-218ENST00000548945 NBPF19A0A087WUL8 3843 aa12.64□□□□□ -0.39
PTCH1-218ENST00000548945 PDZK1P1A8MUH7 402 aa12.64□□□□□ -0.39
PTCH1-218ENST00000548945 MKRN2OSH3BPM6 223 aa12.64□□□□□ -0.39
PTCH1-218ENST00000548945 KCNJ13O60928 360 aa12.64□□□□□ -0.39
PTCH1-218ENST00000548945 CDK14O94921 469 aa12.64□□□□□ -0.39
PTCH1-218ENST00000548945 NDUFA10O95299 355 aa12.64□□□□□ -0.39
PTCH1-218ENST00000548945 MT-ND3P03897 115 aa12.64□□□□□ -0.39
PTCH1-218ENST00000548945 NTRK1P04629 796 aa12.64□□□□□ -0.39
PTCH1-218ENST00000548945 GYPCP04921 128 aa12.64□□□□□ -0.39
PTCH1-218ENST00000548945 BRAFP15056 766 aa12.64□□□□□ -0.39
PTCH1-218ENST00000548945 ZFXP17010 805 aaPredicted RBP12.64□□□□□ -0.39
PTCH1-218ENST00000548945 BPIP17213 487 aa12.64□□□□□ -0.39
PTCH1-218ENST00000548945 TYRP1P17643 537 aa12.64□□□□□ -0.39
PTCH1-218ENST00000548945 VCLP18206 1134 aa12.64□□□□□ -0.39
PTCH1-218ENST00000548945 IDSP22304 550 aa12.64□□□□□ -0.39
PTCH1-218ENST00000548945 F8A1P23610 371 aa12.64□□□□□ -0.39
PTCH1-218ENST00000548945 CDK18Q07002 472 aa12.64□□□□□ -0.39
PTCH1-218ENST00000548945 ZFYVE27Q5T4F4 411 aa12.64□□□□□ -0.39
PTCH1-218ENST00000548945 ALS2CLQ60I27 953 aa12.64□□□□□ -0.39
PTCH1-218ENST00000548945 C16orf46Q6P387 395 aa12.64□□□□□ -0.39
PTCH1-218ENST00000548945 CRTC3Q6UUV7 619 aa12.64□□□□□ -0.39
PTCH1-218ENST00000548945 ZNF547Q8IVP9 402 aa12.64□□□□□ -0.39
PTCH1-218ENST00000548945 DTX3LQ8TDB6 740 aa12.64□□□□□ -0.39
PTCH1-218ENST00000548945 RAPGEF5Q92565 580 aa12.64□□□□□ -0.39
PTCH1-218ENST00000548945 STAMBPL1Q96FJ0 436 aa12.64□□□□□ -0.39
PTCH1-218ENST00000548945 OLFM3Q96PB7 478 aa12.64□□□□□ -0.39
PTCH1-218ENST00000548945 OR6C1Q96RD1 312 aa12.64□□□□□ -0.39
PTCH1-218ENST00000548945 TSPY26PQ9H489 355 aa12.64□□□□□ -0.39
PTCH1-218ENST00000548945 ARFGAP3Q9NP61 516 aa12.64□□□□□ -0.39
PTCH1-218ENST00000548945 SEMA5BQ9P283 1151 aa12.64□□□□□ -0.39
PTCH1-218ENST00000548945 CROTQ9UKG9 612 aa12.64□□□□□ -0.39
PTCH1-218ENST00000548945 SHOC2Q9UQ13 582 aa12.64□□□□□ -0.39
PTCH1-218ENST00000548945 POLHQ9Y253 713 aa12.64□□□□□ -0.39
PTCH1-218ENST00000548945 HEY1Q9Y5J3 304 aa12.64□□□□□ -0.39
PTCH1-218ENST00000548945 MED13Q9UHV7 2174 aa12.63□□□□□ -0.39
PTCH1-218ENST00000548945 LRRD1A4D1F6 860 aa12.63□□□□□ -0.39
PTCH1-218ENST00000548945 PPP1R12AO14974 1030 aaPredicted RBP12.63□□□□□ -0.39
PTCH1-218ENST00000548945 RASSF9O75901 435 aa12.63□□□□□ -0.39
PTCH1-218ENST00000548945 KIAA0754O94854 1291 aa12.63□□□□□ -0.39
PTCH1-218ENST00000548945 NDST3O95803 873 aa12.63□□□□□ -0.39
PTCH1-218ENST00000548945 CCNYL3P0C7X3 344 aa12.63□□□□□ -0.39
PTCH1-218ENST00000548945 PIRTP0C851 137 aa12.63□□□□□ -0.39
PTCH1-218ENST00000548945 ZNF28P17035 718 aa12.63□□□□□ -0.39
PTCH1-218ENST00000548945 NELFEP18615 380 aaKnown RBP12.63□□□□□ -0.39
PTCH1-218ENST00000548945 LEPRP48357 1165 aaKnown RBP12.63□□□□□ -0.39
PTCH1-218ENST00000548945 CD97P48960 835 aa12.63□□□□□ -0.39
PTCH1-218ENST00000548945 SH3BP2P78314 561 aa12.63□□□□□ -0.39
PTCH1-218ENST00000548945 AP1B1Q10567 949 aa12.63□□□□□ -0.39
PTCH1-218ENST00000548945 GPR18Q14330 331 aa12.63□□□□□ -0.39
PTCH1-218ENST00000548945 IGFBP7Q16270 282 aa12.63□□□□□ -0.39
PTCH1-218ENST00000548945 SLC18A3Q16572 532 aa12.63□□□□□ -0.39
PTCH1-218ENST00000548945 ZNF648Q5T619 568 aaPredicted RBP12.63□□□□□ -0.39
PTCH1-218ENST00000548945 ATP1A1-AS1Q5TC04 95 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms