RNA–Protein interactions for RNA: ENST00000540428.1

CBX3P4-202, Transcript of chromobox 3 pseudogene 4, humanhuman

TSL 2 BASIC

Gene CBX3P4, Length 423 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3P4-202ENST00000540428 TADA1Q96BN2 335 aa11.82□□□□□ -0.52
CBX3P4-202ENST00000540428 IMP4Q96G21 291 aaKnown RBP11.82□□□□□ -0.52
CBX3P4-202ENST00000540428 TGM7Q96PF1 710 aa11.82□□□□□ -0.52
CBX3P4-202ENST00000540428 VPS35Q96QK1 796 aa11.82□□□□□ -0.52
CBX3P4-202ENST00000540428 RAB33BQ9H082 229 aa11.82□□□□□ -0.52
CBX3P4-202ENST00000540428 SLC25A51Q9H1U9 297 aa11.82□□□□□ -0.52
CBX3P4-202ENST00000540428 ARFGAP3Q9NP61 516 aa11.82□□□□□ -0.52
CBX3P4-202ENST00000540428 SLC23A2Q9UGH3 650 aa11.82□□□□□ -0.52
CBX3P4-202ENST00000540428 KCND3Q9UK17 655 aa11.82□□□□□ -0.52
CBX3P4-202ENST00000540428 CROTQ9UKG9 612 aa11.82□□□□□ -0.52
CBX3P4-202ENST00000540428 ZNF711Q9Y462 761 aa11.82□□□□□ -0.52
CBX3P4-202ENST00000540428 PCDHGA6Q9Y5G7 932 aa11.82□□□□□ -0.52
CBX3P4-202ENST00000540428 KCNMB2Q9Y691 235 aa11.82□□□□□ -0.52
CBX3P4-202ENST00000540428 SLC30A1Q9Y6M5 507 aa11.82□□□□□ -0.52
CBX3P4-202ENST00000540428 ZFC3H1O60293 1989 aaKnown RBP11.81□□□□□ -0.52
CBX3P4-202ENST00000540428 MKRN2OSH3BPM6 223 aa11.81□□□□□ -0.52
CBX3P4-202ENST00000540428 PPP1R12AO14974 1030 aaPredicted RBP11.81□□□□□ -0.52
CBX3P4-202ENST00000540428 KCNJ13O60928 360 aa11.81□□□□□ -0.52
CBX3P4-202ENST00000540428 CDK14O94921 469 aa11.81□□□□□ -0.52
CBX3P4-202ENST00000540428 NDUFA10O95299 355 aa11.81□□□□□ -0.52
CBX3P4-202ENST00000540428 MT-ND3P03897 115 aa11.81□□□□□ -0.52
CBX3P4-202ENST00000540428 NTRK1P04629 796 aa11.81□□□□□ -0.52
CBX3P4-202ENST00000540428 FGF5P12034 268 aa11.81□□□□□ -0.52
CBX3P4-202ENST00000540428 BRAFP15056 766 aa11.81□□□□□ -0.52
CBX3P4-202ENST00000540428 TYRP1P17643 537 aa11.81□□□□□ -0.52
CBX3P4-202ENST00000540428 VCLP18206 1134 aa11.81□□□□□ -0.52
CBX3P4-202ENST00000540428 IDSP22304 550 aa11.81□□□□□ -0.52
CBX3P4-202ENST00000540428 F8A1P23610 371 aa11.81□□□□□ -0.52
CBX3P4-202ENST00000540428 HNRNPH3P31942 346 aaKnown RBP11.81□□□□□ -0.52
CBX3P4-202ENST00000540428 UBASH3AP57075 661 aa11.81□□□□□ -0.52
CBX3P4-202ENST00000540428 CDK18Q07002 472 aa11.81□□□□□ -0.52
CBX3P4-202ENST00000540428 PDK1Q15118 436 aa11.81□□□□□ -0.52
CBX3P4-202ENST00000540428 IGFBP7Q16270 282 aa11.81□□□□□ -0.52
CBX3P4-202ENST00000540428 LARP7Q4G0J3 582 aaKnown RBP eCLIP11.81□□□□□ -0.52
CBX3P4-202ENST00000540428 ZFYVE27Q5T4F4 411 aa11.81□□□□□ -0.52
CBX3P4-202ENST00000540428 ZNF648Q5T619 568 aaPredicted RBP11.81□□□□□ -0.52
CBX3P4-202ENST00000540428 ATP1A1-AS1Q5TC04 95 aa11.81□□□□□ -0.52
CBX3P4-202ENST00000540428 SLC9A4Q6AI14 798 aa11.81□□□□□ -0.52
CBX3P4-202ENST00000540428 ZNF547Q8IVP9 402 aa11.81□□□□□ -0.52
CBX3P4-202ENST00000540428 DTX3LQ8TDB6 740 aa11.81□□□□□ -0.52
CBX3P4-202ENST00000540428 CPLX3Q8WVH0 158 aa11.81□□□□□ -0.52
CBX3P4-202ENST00000540428 CTNNBL1Q8WYA6 563 aaPredicted RBP11.81□□□□□ -0.52
CBX3P4-202ENST00000540428 RAPGEF5Q92565 580 aa11.81□□□□□ -0.52
CBX3P4-202ENST00000540428 STAMBPL1Q96FJ0 436 aa11.81□□□□□ -0.52
CBX3P4-202ENST00000540428 ZDHHC12Q96GR4 267 aa11.81□□□□□ -0.52
CBX3P4-202ENST00000540428 OR6C1Q96RD1 312 aa11.81□□□□□ -0.52
CBX3P4-202ENST00000540428 GPR63Q9BZJ6 419 aa11.81□□□□□ -0.52
CBX3P4-202ENST00000540428 BRD8Q9H0E9 1235 aa11.81□□□□□ -0.52
CBX3P4-202ENST00000540428 SLC40A1Q9NP59 571 aa11.81□□□□□ -0.52
CBX3P4-202ENST00000540428 SEMA5BQ9P283 1151 aa11.81□□□□□ -0.52
CBX3P4-202ENST00000540428 SHOC2Q9UQ13 582 aa11.81□□□□□ -0.52
CBX3P4-202ENST00000540428 POLHQ9Y253 713 aa11.81□□□□□ -0.52
CBX3P4-202ENST00000540428 MRPS18BQ9Y676 258 aaKnown RBP11.81□□□□□ -0.52
CBX3P4-202ENST00000540428 SPAG6O75602 509 aa11.8□□□□□ -0.52
CBX3P4-202ENST00000540428 RASSF9O75901 435 aa11.8□□□□□ -0.52
CBX3P4-202ENST00000540428 KIAA0754O94854 1291 aa11.8□□□□□ -0.52
CBX3P4-202ENST00000540428 NDST3O95803 873 aa11.8□□□□□ -0.52
CBX3P4-202ENST00000540428 GYPCP04921 128 aa11.8□□□□□ -0.52
CBX3P4-202ENST00000540428 CCNYL3P0C7X3 344 aa11.8□□□□□ -0.52
CBX3P4-202ENST00000540428 ZFXP17010 805 aaPredicted RBP11.8□□□□□ -0.52
CBX3P4-202ENST00000540428 BPIP17213 487 aa11.8□□□□□ -0.52
CBX3P4-202ENST00000540428 NELFEP18615 380 aaKnown RBP11.8□□□□□ -0.52
CBX3P4-202ENST00000540428 LEPRP48357 1165 aaKnown RBP11.8□□□□□ -0.52
CBX3P4-202ENST00000540428 CD97P48960 835 aa11.8□□□□□ -0.52
CBX3P4-202ENST00000540428 SEPHS1P49903 392 aa11.8□□□□□ -0.52
CBX3P4-202ENST00000540428 SH3BP2P78314 561 aa11.8□□□□□ -0.52
CBX3P4-202ENST00000540428 AP1B1Q10567 949 aa11.8□□□□□ -0.52
CBX3P4-202ENST00000540428 ZDHHC20Q5W0Z9 365 aa11.8□□□□□ -0.52
CBX3P4-202ENST00000540428 CCDC70Q6NSX1 233 aa11.8□□□□□ -0.52
CBX3P4-202ENST00000540428 BPHLQ86WA6 291 aaPredicted RBP11.8□□□□□ -0.52
CBX3P4-202ENST00000540428 PPP1R3BQ86XI6 285 aa11.8□□□□□ -0.52
CBX3P4-202ENST00000540428 RASGRP3Q8IV61 690 aa11.8□□□□□ -0.52
CBX3P4-202ENST00000540428 GALNT6Q8NCL4 622 aa11.8□□□□□ -0.52
CBX3P4-202ENST00000540428 BRSK1Q8TDC3 778 aa11.8□□□□□ -0.52
CBX3P4-202ENST00000540428 TRAF3IP1Q8TDR0 691 aaPredicted RBP11.8□□□□□ -0.52
CBX3P4-202ENST00000540428 SEC14L1Q92503 715 aa11.8□□□□□ -0.52
CBX3P4-202ENST00000540428 RSC1A1Q92681 617 aa11.8□□□□□ -0.52
CBX3P4-202ENST00000540428 CXorf40BQ96DE9 158 aa11.8□□□□□ -0.52
CBX3P4-202ENST00000540428 OLFM3Q96PB7 478 aa11.8□□□□□ -0.52
CBX3P4-202ENST00000540428 FCRL4Q96PJ5 515 aa11.8□□□□□ -0.52
CBX3P4-202ENST00000540428 MAK16Q9BXY0 300 aaKnown RBP11.8□□□□□ -0.52
CBX3P4-202ENST00000540428 CBX8Q9HC52 389 aa11.8□□□□□ -0.52
CBX3P4-202ENST00000540428 TP53TG5Q9Y2B4 290 aa11.8□□□□□ -0.52
CBX3P4-202ENST00000540428 DNAJC16Q9Y2G8 782 aa11.8□□□□□ -0.52
CBX3P4-202ENST00000540428 HEY1Q9Y5J3 304 aa11.8□□□□□ -0.52
CBX3P4-202ENST00000540428 LRRD1A4D1F6 860 aa11.79□□□□□ -0.52
CBX3P4-202ENST00000540428 C21orf140B9A014 251 aa11.79□□□□□ -0.52
CBX3P4-202ENST00000540428 APOL1O14791 398 aa11.79□□□□□ -0.52
CBX3P4-202ENST00000540428 CREG1O75629 220 aa11.79□□□□□ -0.52
CBX3P4-202ENST00000540428 RFPL1O75677 317 aa11.79□□□□□ -0.52
CBX3P4-202ENST00000540428 SLC4A1P02730 911 aa11.79□□□□□ -0.52
CBX3P4-202ENST00000540428 TMEM253P0C7T8 217 aa11.79□□□□□ -0.52
CBX3P4-202ENST00000540428 PIRTP0C851 137 aa11.79□□□□□ -0.52
CBX3P4-202ENST00000540428 GP1BBP13224 206 aa11.79□□□□□ -0.52
CBX3P4-202ENST00000540428 RPL10P27635 214 aaKnown RBP11.79□□□□□ -0.52
CBX3P4-202ENST00000540428 HMGCLP35914 325 aa11.79□□□□□ -0.52
CBX3P4-202ENST00000540428 HALP42357 657 aa11.79□□□□□ -0.52
CBX3P4-202ENST00000540428 DMPKQ09013 629 aa11.79□□□□□ -0.52
CBX3P4-202ENST00000540428 TMEM115Q12893 351 aaPredicted RBP11.79□□□□□ -0.52
CBX3P4-202ENST00000540428 GTF2H3Q13889 308 aa11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms