RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 OR56A5P0C7T3 313 aa20.78■□□□□ 0.92
VPS28-208ENST00000527797 C7P10643 843 aa20.78■□□□□ 0.92
VPS28-208ENST00000527797 MYL2P10916 166 aa20.78■□□□□ 0.92
VPS28-208ENST00000527797 CHRNB1P11230 501 aa20.78■□□□□ 0.92
VPS28-208ENST00000527797 ACADMP11310 421 aa20.78■□□□□ 0.92
VPS28-208ENST00000527797 CD1DP15813 335 aa20.78■□□□□ 0.92
VPS28-208ENST00000527797 DRD4P21917 467 aa20.78■□□□□ 0.92
VPS28-208ENST00000527797 KCNA4P22459 653 aa20.78■□□□□ 0.92
VPS28-208ENST00000527797 GPR1P46091 355 aa20.78■□□□□ 0.92
VPS28-208ENST00000527797 CLCN7P51798 805 aa20.78■□□□□ 0.92
VPS28-208ENST00000527797 LRRC32Q14392 662 aa20.78■□□□□ 0.92
VPS28-208ENST00000527797 CRY1Q16526 586 aa20.78■□□□□ 0.92
VPS28-208ENST00000527797 USP30Q70CQ3 517 aa20.78■□□□□ 0.92
VPS28-208ENST00000527797 KBTBD6Q86V97 674 aa20.78■□□□□ 0.92
VPS28-208ENST00000527797 SYNPOQ8N3V7 929 aa20.78■□□□□ 0.92
VPS28-208ENST00000527797 OR14C36Q8NHC7 312 aa20.78■□□□□ 0.92
VPS28-208ENST00000527797 RAB3IL1Q8TBN0 382 aa20.78■□□□□ 0.92
VPS28-208ENST00000527797 INPP5DQ92835 1189 aa20.78■□□□□ 0.92
VPS28-208ENST00000527797 SHDQ96IW2 340 aa20.78■□□□□ 0.92
VPS28-208ENST00000527797 MRGPRX1Q96LB2 322 aa20.78■□□□□ 0.92
VPS28-208ENST00000527797 PANX3Q96QZ0 392 aa20.78■□□□□ 0.92
VPS28-208ENST00000527797 SLC30A3Q99726 388 aa20.78■□□□□ 0.92
VPS28-208ENST00000527797 NSRP1Q9H0G5 558 aaKnown RBP20.78■□□□□ 0.92
VPS28-208ENST00000527797 FBXL21Q9UKT6 434 aa20.78■□□□□ 0.92
VPS28-208ENST00000527797 TCRBV21S2A2A0A5A6 115 aa20.78■□□□□ 0.92
VPS28-208ENST00000527797 G3V2L1 256 aa20.78■□□□□ 0.92
VPS28-208ENST00000527797 TK2O00142 265 aa20.78■□□□□ 0.92
VPS28-208ENST00000527797 KLF11O14901 512 aa20.78■□□□□ 0.92
VPS28-208ENST00000527797 PLRG1O43660 514 aaKnown RBP20.78■□□□□ 0.92
VPS28-208ENST00000527797 TFEBP19484 476 aa20.78■□□□□ 0.92
VPS28-208ENST00000527797 IL2P60568 153 aa20.78■□□□□ 0.92
VPS28-208ENST00000527797 CHI3L2Q15782 390 aa20.78■□□□□ 0.92
VPS28-208ENST00000527797 ATG16L1Q676U5 607 aa20.78■□□□□ 0.92
VPS28-208ENST00000527797 RAET1GQ6H3X3 334 aa20.78■□□□□ 0.92
VPS28-208ENST00000527797 ZYG11AQ6WRX3 759 aa20.78■□□□□ 0.92
VPS28-208ENST00000527797 C10orf107Q8IVU9 208 aa20.78■□□□□ 0.92
VPS28-208ENST00000527797 PPP1R14CQ8TAE6 165 aa20.78■□□□□ 0.92
VPS28-208ENST00000527797 NAT14Q8WUY8 206 aa20.78■□□□□ 0.92
VPS28-208ENST00000527797 SREK1Q8WXA9 508 aaKnown RBP20.78■□□□□ 0.92
VPS28-208ENST00000527797 DERL2Q9GZP9 239 aa20.78■□□□□ 0.92
VPS28-208ENST00000527797 LMAN1LQ9HAT1 526 aa20.78■□□□□ 0.92
VPS28-208ENST00000527797 FZD4Q9ULV1 537 aa20.78■□□□□ 0.92
VPS28-208ENST00000527797 F5P12259 2224 aa20.78■□□□□ 0.92
VPS28-208ENST00000527797 MYO10Q9HD67 2058 aa20.77■□□□□ 0.92
VPS28-208ENST00000527797 TARM1B6A8C7 271 aa20.77■□□□□ 0.92
VPS28-208ENST00000527797 F8W8V4 182 aa20.77■□□□□ 0.92
VPS28-208ENST00000527797 MTX2O75431 263 aa20.77■□□□□ 0.92
VPS28-208ENST00000527797 AP2A2O94973 939 aa20.77■□□□□ 0.92
VPS28-208ENST00000527797 SBK3P0C264 359 aa20.77■□□□□ 0.92
VPS28-208ENST00000527797 ITGB6P18564 788 aa20.77■□□□□ 0.92
VPS28-208ENST00000527797 ATP6V0D1P61421 351 aa20.77■□□□□ 0.92
VPS28-208ENST00000527797 TECRLQ5HYJ1 363 aa20.77■□□□□ 0.92
VPS28-208ENST00000527797 KIAA1324Q6UXG2 1013 aaKnown RBP20.77■□□□□ 0.92
VPS28-208ENST00000527797 PHYKPLQ8IUZ5 450 aa20.77■□□□□ 0.92
VPS28-208ENST00000527797 GIMAP7Q8NHV1 300 aa20.77■□□□□ 0.92
VPS28-208ENST00000527797 PITPNM3Q9BZ71 974 aa20.77■□□□□ 0.92
VPS28-208ENST00000527797 POLMQ9NP87 494 aaPredicted RBP20.77■□□□□ 0.92
VPS28-208ENST00000527797 SPATS2LQ9NUQ6 558 aaKnown RBP20.77■□□□□ 0.92
VPS28-208ENST00000527797 FGFR1OP2Q9NVK5 253 aa20.77■□□□□ 0.92
VPS28-208ENST00000527797 NDUFAB1O14561 156 aa20.76■□□□□ 0.91
VPS28-208ENST00000527797 INPP4BO15327 924 aa20.76■□□□□ 0.91
VPS28-208ENST00000527797 SOD1P00441 154 aa20.76■□□□□ 0.91
VPS28-208ENST00000527797 NDUFV2P19404 249 aa20.76■□□□□ 0.91
VPS28-208ENST00000527797 RPS21P63220 83 aaKnown RBP20.76■□□□□ 0.91
VPS28-208ENST00000527797 KIAA1161Q6NSJ0 714 aa20.76■□□□□ 0.91
VPS28-208ENST00000527797 Q6ZS52 159 aa20.76■□□□□ 0.91
VPS28-208ENST00000527797 DET1Q7L5Y6 550 aa20.76■□□□□ 0.91
VPS28-208ENST00000527797 ISCA2Q86U28 154 aa20.76■□□□□ 0.91
VPS28-208ENST00000527797 ZNF687Q8N1G0 1237 aa20.76■□□□□ 0.91
VPS28-208ENST00000527797 LKAAEAR1Q8TD35 194 aa20.76■□□□□ 0.91
VPS28-208ENST00000527797 TFB2MQ9H5Q4 396 aaKnown RBP20.76■□□□□ 0.91
VPS28-208ENST00000527797 LATS2Q9NRM7 1088 aa20.76■□□□□ 0.91
VPS28-208ENST00000527797 THEGQ9P2T0 379 aa20.76■□□□□ 0.91
VPS28-208ENST00000527797 C19orf67A6NJJ6 358 aa20.75■□□□□ 0.91
VPS28-208ENST00000527797 CHURC1-FNTBB4DL54 471 aa20.75■□□□□ 0.91
VPS28-208ENST00000527797 QSOX1O00391 747 aa20.75■□□□□ 0.91
VPS28-208ENST00000527797 ZBTB14O43829 449 aa20.75■□□□□ 0.91
VPS28-208ENST00000527797 MAGEC1O60732 1142 aa20.75■□□□□ 0.91
VPS28-208ENST00000527797 ADPRHP54922 357 aa20.75■□□□□ 0.91
VPS28-208ENST00000527797 STARD6P59095 220 aa20.75■□□□□ 0.91
VPS28-208ENST00000527797 AGERQ15109 404 aa20.75■□□□□ 0.91
VPS28-208ENST00000527797 SEL1L3Q68CR1 1132 aa20.75■□□□□ 0.91
VPS28-208ENST00000527797 FAM47EQ6ZV65 393 aa20.75■□□□□ 0.91
VPS28-208ENST00000527797 CPNE9Q8IYJ1 553 aa20.75■□□□□ 0.91
VPS28-208ENST00000527797 PELI3Q8N2H9 469 aa20.75■□□□□ 0.91
VPS28-208ENST00000527797 ZBTB2Q8N680 514 aa20.75■□□□□ 0.91
VPS28-208ENST00000527797 EEF1AKMT1Q8WVE0 214 aa20.75■□□□□ 0.91
VPS28-208ENST00000527797 LINGO1Q96FE5 620 aa20.75■□□□□ 0.91
VPS28-208ENST00000527797 TSSK1BQ9BXA7 367 aa20.75■□□□□ 0.91
VPS28-208ENST00000527797 ALG9Q9H6U8 611 aa20.75■□□□□ 0.91
VPS28-208ENST00000527797 PREBQ9HCU5 417 aa20.75■□□□□ 0.91
VPS28-208ENST00000527797 KLHL42Q9P2K6 505 aa20.75■□□□□ 0.91
VPS28-208ENST00000527797 CNOT6Q9ULM6 557 aaKnown RBP20.75■□□□□ 0.91
VPS28-208ENST00000527797 PLXNA2O75051 1894 aa20.75■□□□□ 0.91
VPS28-208ENST00000527797 KRBA1A5PL33 1030 aa20.75■□□□□ 0.91
VPS28-208ENST00000527797 K7ESM1 405 aa20.75■□□□□ 0.91
VPS28-208ENST00000527797 TRIM13O60858 407 aa20.75■□□□□ 0.91
VPS28-208ENST00000527797 EDF1O60869 148 aaKnown RBP20.75■□□□□ 0.91
VPS28-208ENST00000527797 FGF3P11487 239 aaPredicted RBP20.75■□□□□ 0.91
VPS28-208ENST00000527797 GABRG2P18507 467 aa20.75■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms