RNA–Protein interactions for RNA: ENST00000516665.1

RNU6-539P-201, Transcript of RNA, U6 small nuclear 539, pseudogene, humanhuman

BASIC

Gene RNU6-539P, Length 103 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-539P-201ENST00000516665 OR4C3Q8NH37 302 aa-1.07□□□□□ -2.58
RNU6-539P-201ENST00000516665 OTUD7AQ8TE49 926 aaPredicted RBP-1.07□□□□□ -2.58
RNU6-539P-201ENST00000516665 SUSD6Q92537 303 aa-1.07□□□□□ -2.58
RNU6-539P-201ENST00000516665 RNF183Q96D59 192 aa-1.07□□□□□ -2.58
RNU6-539P-201ENST00000516665 ATXN7L3BQ96GX2 97 aa-1.07□□□□□ -2.58
RNU6-539P-201ENST00000516665 FAXDC2Q96IV6 333 aa-1.07□□□□□ -2.58
RNU6-539P-201ENST00000516665 PINK1Q9BXM7 581 aa-1.07□□□□□ -2.58
RNU6-539P-201ENST00000516665 MAK16Q9BXY0 300 aaKnown RBP-1.07□□□□□ -2.58
RNU6-539P-201ENST00000516665 TKTL2Q9H0I9 626 aa-1.07□□□□□ -2.58
RNU6-539P-201ENST00000516665 ZMAT3Q9HA38 289 aaKnown RBP-1.07□□□□□ -2.58
RNU6-539P-201ENST00000516665 APOBEC3GQ9HC16 384 aaKnown RBP-1.07□□□□□ -2.58
RNU6-539P-201ENST00000516665 RETNQ9HD89 108 aa-1.07□□□□□ -2.58
RNU6-539P-201ENST00000516665 SLC38A7Q9NVC3 462 aa-1.07□□□□□ -2.58
RNU6-539P-201ENST00000516665 GRHL1Q9NZI5 618 aa-1.07□□□□□ -2.58
RNU6-539P-201ENST00000516665 STOX2Q9P2F5 926 aaPredicted RBP-1.07□□□□□ -2.58
RNU6-539P-201ENST00000516665 SLC12A4Q9UP95 1085 aa-1.07□□□□□ -2.58
RNU6-539P-201ENST00000516665 ATP8A1Q9Y2Q0 1164 aa-1.07□□□□□ -2.58
RNU6-539P-201ENST00000516665 A0A088AWK7 358 aa-1.08□□□□□ -2.58
RNU6-539P-201ENST00000516665 IGLV9-49A0A0B4J1Y8 123 aa-1.08□□□□□ -2.58
RNU6-539P-201ENST00000516665 A0A1W2PPL8 197 aa-1.08□□□□□ -2.58
RNU6-539P-201ENST00000516665 TMEM150BA6NC51 233 aa-1.08□□□□□ -2.58
RNU6-539P-201ENST00000516665 E9PAM4 449 aa-1.08□□□□□ -2.58
RNU6-539P-201ENST00000516665 FFAR2O15552 330 aa-1.08□□□□□ -2.58
RNU6-539P-201ENST00000516665 SLC25A17O43808 307 aa-1.08□□□□□ -2.58
RNU6-539P-201ENST00000516665 DTNBO60941 627 aa-1.08□□□□□ -2.58
RNU6-539P-201ENST00000516665 NDUFB4O95168 129 aa-1.08□□□□□ -2.58
RNU6-539P-201ENST00000516665 CSPG5O95196 566 aa-1.08□□□□□ -2.58
RNU6-539P-201ENST00000516665 VENTXO95231 258 aa-1.08□□□□□ -2.58
RNU6-539P-201ENST00000516665 MT-CO1P00395 513 aa-1.08□□□□□ -2.58
RNU6-539P-201ENST00000516665 IGLV1-47P01700 117 aa-1.08□□□□□ -2.58
RNU6-539P-201ENST00000516665 ITGA5P08648 1049 aa-1.08□□□□□ -2.58
RNU6-539P-201ENST00000516665 ATP1A3P13637 1013 aa-1.08□□□□□ -2.58
RNU6-539P-201ENST00000516665 CDK11BP21127 795 aaKnown RBP-1.08□□□□□ -2.58
RNU6-539P-201ENST00000516665 PIK3CBP42338 1070 aa-1.08□□□□□ -2.58
RNU6-539P-201ENST00000516665 ZNF75DP51815 510 aa-1.08□□□□□ -2.58
RNU6-539P-201ENST00000516665 RPS16P62249 146 aaKnown RBP-1.08□□□□□ -2.58
RNU6-539P-201ENST00000516665 ACVR2BQ13705 512 aa-1.08□□□□□ -2.58
RNU6-539P-201ENST00000516665 ODF1Q14990 250 aa-1.08□□□□□ -2.58
RNU6-539P-201ENST00000516665 ISXQ2M1V0 245 aa-1.08□□□□□ -2.58
RNU6-539P-201ENST00000516665 SOWAHAQ2M3V2 549 aa-1.08□□□□□ -2.58
RNU6-539P-201ENST00000516665 FRG2Q64ET8 278 aa-1.08□□□□□ -2.58
RNU6-539P-201ENST00000516665 FAAH2Q6GMR7 532 aa-1.08□□□□□ -2.58
RNU6-539P-201ENST00000516665 GALNT17Q6IS24 598 aa-1.08□□□□□ -2.58
RNU6-539P-201ENST00000516665 KLHL17Q6TDP4 642 aa-1.08□□□□□ -2.58
RNU6-539P-201ENST00000516665 KIAA1324Q6UXG2 1013 aaKnown RBP-1.08□□□□□ -2.58
RNU6-539P-201ENST00000516665 ZNF704Q6ZNC4 412 aaPredicted RBP-1.08□□□□□ -2.58
RNU6-539P-201ENST00000516665 HAUS6Q7Z4H7 955 aa-1.08□□□□□ -2.58
RNU6-539P-201ENST00000516665 OR4N5Q8IXE1 308 aa-1.08□□□□□ -2.58
RNU6-539P-201ENST00000516665 UBQLNLQ8IYU4 475 aa-1.08□□□□□ -2.58
RNU6-539P-201ENST00000516665 VPS52Q8N1B4 723 aa-1.08□□□□□ -2.58
RNU6-539P-201ENST00000516665 METTL4Q8N3J2 472 aa-1.08□□□□□ -2.58
RNU6-539P-201ENST00000516665 SCAIQ8N9R8 606 aa-1.08□□□□□ -2.58
RNU6-539P-201ENST00000516665 CSNK1G2-AS1Q8NCQ2 148 aa-1.08□□□□□ -2.58
RNU6-539P-201ENST00000516665 HMGCLL1Q8TB92 370 aa-1.08□□□□□ -2.58
RNU6-539P-201ENST00000516665 CGRRF1Q99675 332 aa-1.08□□□□□ -2.58
RNU6-539P-201ENST00000516665 MAP3K3Q99759 626 aa-1.08□□□□□ -2.58
RNU6-539P-201ENST00000516665 OLFM1Q99784 485 aa-1.08□□□□□ -2.58
RNU6-539P-201ENST00000516665 TRAIPQ9BWF2 469 aa-1.08□□□□□ -2.58
RNU6-539P-201ENST00000516665 SLC12A5Q9H2X9 1139 aa-1.08□□□□□ -2.58
RNU6-539P-201ENST00000516665 ARNT2Q9HBZ2 717 aa-1.08□□□□□ -2.58
RNU6-539P-201ENST00000516665 TRPC7Q9HCX4 862 aa-1.08□□□□□ -2.58
RNU6-539P-201ENST00000516665 SACM1LQ9NTJ5 587 aa-1.08□□□□□ -2.58
RNU6-539P-201ENST00000516665 ECHDC1Q9NTX5 307 aa-1.08□□□□□ -2.58
RNU6-539P-201ENST00000516665 STAU2Q9NUL3 570 aaKnown RBP eCLIP-1.08□□□□□ -2.58
RNU6-539P-201ENST00000516665 EXD2Q9NVH0 621 aa-1.08□□□□□ -2.58
RNU6-539P-201ENST00000516665 CISD1Q9NZ45 108 aaKnown RBP-1.08□□□□□ -2.58
RNU6-539P-201ENST00000516665 UPB1Q9UBR1 384 aa-1.08□□□□□ -2.58
RNU6-539P-201ENST00000516665 NDRG3Q9UGV2 375 aa-1.08□□□□□ -2.58
RNU6-539P-201ENST00000516665 ITGB1BP2Q9UKP3 347 aa-1.08□□□□□ -2.58
RNU6-539P-201ENST00000516665 PCDHGB5Q9Y5G0 923 aa-1.08□□□□□ -2.58
RNU6-539P-201ENST00000516665 RFNGQ9Y644 331 aa-1.08□□□□□ -2.58
RNU6-539P-201ENST00000516665 COL27A1Q8IZC6 1860 aaPredicted RBP-1.08□□□□□ -2.58
RNU6-539P-201ENST00000516665 ASTN1O14525 1302 aa-1.09□□□□□ -2.58
RNU6-539P-201ENST00000516665 WASHC2CQ9Y4E1 1318 aa-1.09□□□□□ -2.58
RNU6-539P-201ENST00000516665 IGKV1D-43A0A0B4J1Z2 117 aa-1.09□□□□□ -2.58
RNU6-539P-201ENST00000516665 A0A0G2JNG1 304 aa-1.09□□□□□ -2.58
RNU6-539P-201ENST00000516665 FAM231BA6NCW3 169 aa-1.09□□□□□ -2.58
RNU6-539P-201ENST00000516665 C17orf100A8MU93 164 aa-1.09□□□□□ -2.58
RNU6-539P-201ENST00000516665 H0YIN7 160 aa-1.09□□□□□ -2.58
RNU6-539P-201ENST00000516665 STBD1O95210 358 aa-1.09□□□□□ -2.58
RNU6-539P-201ENST00000516665 DCNP07585 359 aaKnown RBP-1.09□□□□□ -2.58
RNU6-539P-201ENST00000516665 UMPSP11172 480 aa-1.09□□□□□ -2.58
RNU6-539P-201ENST00000516665 TOP1P11387 765 aaKnown RBP-1.09□□□□□ -2.58
RNU6-539P-201ENST00000516665 HSD3B1P14060 373 aa-1.09□□□□□ -2.58
RNU6-539P-201ENST00000516665 DDX5P17844 614 aaKnown RBP-1.09□□□□□ -2.58
RNU6-539P-201ENST00000516665 GRK5P34947 590 aa-1.09□□□□□ -2.58
RNU6-539P-201ENST00000516665 CENPAP49450 140 aa-1.09□□□□□ -2.58
RNU6-539P-201ENST00000516665 SUOXP51687 545 aa-1.09□□□□□ -2.58
RNU6-539P-201ENST00000516665 OAZ1P54368 228 aa-1.09□□□□□ -2.58
RNU6-539P-201ENST00000516665 GPR17Q13304 367 aa-1.09□□□□□ -2.58
RNU6-539P-201ENST00000516665 KIR2DS5Q14953 304 aa-1.09□□□□□ -2.58
RNU6-539P-201ENST00000516665 PCBP2Q15366 365 aaKnown RBP eCLIP-1.09□□□□□ -2.58
RNU6-539P-201ENST00000516665 ME3Q16798 604 aa-1.09□□□□□ -2.58
RNU6-539P-201ENST00000516665 TIMM50Q3ZCQ8 353 aa-1.09□□□□□ -2.58
RNU6-539P-201ENST00000516665 ZNF658Q5TYW1 1059 aaPredicted RBP-1.09□□□□□ -2.58
RNU6-539P-201ENST00000516665 Q6ZSA8 131 aa-1.09□□□□□ -2.58
RNU6-539P-201ENST00000516665 UNC13DQ70J99 1090 aa-1.09□□□□□ -2.58
RNU6-539P-201ENST00000516665 TAOK1Q7L7X3 1001 aa-1.09□□□□□ -2.58
RNU6-539P-201ENST00000516665 CATIPQ7Z7H3 387 aa-1.09□□□□□ -2.58
RNU6-539P-201ENST00000516665 LONP2Q86WA8 852 aa-1.09□□□□□ -2.58
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms