RNA–Protein interactions for RNA: ENST00000514442.5

TCOF1-213, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,195 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-213ENST00000514442 ABRQ12979 859 aa13.04□□□□□ -0.32
TCOF1-213ENST00000514442 CLEC20AQ6ZU45 233 aa13.04□□□□□ -0.32
TCOF1-213ENST00000514442 SYT12Q8IV01 421 aa13.04□□□□□ -0.32
TCOF1-213ENST00000514442 LRRC20Q8TCA0 184 aa13.04□□□□□ -0.32
TCOF1-213ENST00000514442 LINGO1Q96FE5 620 aa13.04□□□□□ -0.32
TCOF1-213ENST00000514442 DMRTB1Q96MA1 342 aa13.04□□□□□ -0.32
TCOF1-213ENST00000514442 ROGDIQ9GZN7 287 aa13.04□□□□□ -0.32
TCOF1-213ENST00000514442 PCDHAC1Q9H158 963 aa13.04□□□□□ -0.32
TCOF1-213ENST00000514442 CARNS1A5YM72 827 aa13.04□□□□□ -0.32
TCOF1-213ENST00000514442 H3BMM5 538 aa13.04□□□□□ -0.32
TCOF1-213ENST00000514442 GUCY1B2O75343 617 aa13.04□□□□□ -0.32
TCOF1-213ENST00000514442 CATP04040 527 aaKnown RBP13.04□□□□□ -0.32
TCOF1-213ENST00000514442 THRBP10828 461 aa13.04□□□□□ -0.32
TCOF1-213ENST00000514442 ATF4P18848 351 aaPredicted RBP13.04□□□□□ -0.32
TCOF1-213ENST00000514442 PIWIL4Q7Z3Z4 852 aaKnown RBP13.04□□□□□ -0.32
TCOF1-213ENST00000514442 PROSER1Q86XN7 944 aa13.04□□□□□ -0.32
TCOF1-213ENST00000514442 IFNLR1Q8IU57 520 aaPredicted RBP13.04□□□□□ -0.32
TCOF1-213ENST00000514442 ZNF557Q8N988 423 aaPredicted RBP13.04□□□□□ -0.32
TCOF1-213ENST00000514442 DHRS1Q96LJ7 313 aa13.04□□□□□ -0.32
TCOF1-213ENST00000514442 MAGEB10Q96LZ2 347 aaPredicted RBP13.04□□□□□ -0.32
TCOF1-213ENST00000514442 SMAD5Q99717 465 aaKnown RBP13.04□□□□□ -0.32
TCOF1-213ENST00000514442 HERC2P3Q9BVR0 1158 aa13.04□□□□□ -0.32
TCOF1-213ENST00000514442 ZFP14Q9HCL3 533 aa13.04□□□□□ -0.32
TCOF1-213ENST00000514442 SUCOQ9UBS9 1254 aaKnown RBP13.04□□□□□ -0.32
TCOF1-213ENST00000514442 VPS51Q9UID3 782 aa13.04□□□□□ -0.32
TCOF1-213ENST00000514442 NCKAP1Q9Y2A7 1128 aa13.04□□□□□ -0.32
TCOF1-213ENST00000514442 VWA7Q9Y334 891 aa13.04□□□□□ -0.32
TCOF1-213ENST00000514442 C10orf71Q711Q0 1435 aa13.04□□□□□ -0.32
TCOF1-213ENST00000514442 LOC110117498-PIK3R3F6TDL0 507 aa13.04□□□□□ -0.32
TCOF1-213ENST00000514442 SNAI1O95863 264 aaPredicted RBP13.04□□□□□ -0.32
TCOF1-213ENST00000514442 RHOQP17081 205 aa13.04□□□□□ -0.32
TCOF1-213ENST00000514442 LBPP18428 481 aa13.04□□□□□ -0.32
TCOF1-213ENST00000514442 RXRGP48443 463 aa13.04□□□□□ -0.32
TCOF1-213ENST00000514442 OR2B6P58173 313 aa13.04□□□□□ -0.32
TCOF1-213ENST00000514442 MPP1Q00013 466 aa13.04□□□□□ -0.32
TCOF1-213ENST00000514442 ACSM2AQ08AH3 577 aa13.04□□□□□ -0.32
TCOF1-213ENST00000514442 ACSM2BQ68CK6 577 aa13.04□□□□□ -0.32
TCOF1-213ENST00000514442 KIAA1324Q6UXG2 1013 aaKnown RBP13.04□□□□□ -0.32
TCOF1-213ENST00000514442 DNAJB14Q8TBM8 379 aa13.04□□□□□ -0.32
TCOF1-213ENST00000514442 TMIGD2Q96BF3 282 aa13.04□□□□□ -0.32
TCOF1-213ENST00000514442 PCYT2Q99447 389 aa13.04□□□□□ -0.32
TCOF1-213ENST00000514442 GBA3Q9H227 469 aa13.04□□□□□ -0.32
TCOF1-213ENST00000514442 PDE10AQ9Y233 779 aa13.04□□□□□ -0.32
TCOF1-213ENST00000514442 TBX1O43435 398 aa13.03□□□□□ -0.32
TCOF1-213ENST00000514442 GPIP06744 558 aa13.03□□□□□ -0.32
TCOF1-213ENST00000514442 KRT20P35900 424 aa13.03□□□□□ -0.32
TCOF1-213ENST00000514442 SEMA5AQ13591 1074 aa13.03□□□□□ -0.32
TCOF1-213ENST00000514442 SIX1Q15475 284 aaPredicted RBP13.03□□□□□ -0.32
TCOF1-213ENST00000514442 ARHGAP17Q68EM7 881 aa13.03□□□□□ -0.32
TCOF1-213ENST00000514442 ZNF621Q6ZSS3 439 aa13.03□□□□□ -0.32
TCOF1-213ENST00000514442 ING5Q8WYH8 240 aa13.03□□□□□ -0.32
TCOF1-213ENST00000514442 ASB2Q96Q27 587 aa13.03□□□□□ -0.32
TCOF1-213ENST00000514442 NODALQ96S42 347 aa13.03□□□□□ -0.32
TCOF1-213ENST00000514442 TNKS2Q9H2K2 1166 aa13.03□□□□□ -0.32
TCOF1-213ENST00000514442 MUC13Q9H3R2 512 aa13.03□□□□□ -0.32
TCOF1-213ENST00000514442 MYH13Q9UKX3 1938 aa13.03□□□□□ -0.32
TCOF1-213ENST00000514442 CRYBG1Q9Y4K1 1723 aa13.03□□□□□ -0.32
TCOF1-213ENST00000514442 FAM172BPA6NC97 362 aa13.03□□□□□ -0.32
TCOF1-213ENST00000514442 ZNF99A8MXY4 864 aaPredicted RBP13.03□□□□□ -0.32
TCOF1-213ENST00000514442 SYN3O14994 580 aa13.03□□□□□ -0.32
TCOF1-213ENST00000514442 TBX18O95935 607 aa13.03□□□□□ -0.32
TCOF1-213ENST00000514442 TFAP2AP05549 437 aa13.03□□□□□ -0.32
TCOF1-213ENST00000514442 C2P06681 752 aa13.03□□□□□ -0.32
TCOF1-213ENST00000514442 GSTM4Q03013 218 aa13.03□□□□□ -0.32
TCOF1-213ENST00000514442 PRKCQQ04759 706 aa13.03□□□□□ -0.32
TCOF1-213ENST00000514442 SMARCB1Q12824 385 aa13.03□□□□□ -0.32
TCOF1-213ENST00000514442 SPESP1Q6UW49 350 aa13.03□□□□□ -0.32
TCOF1-213ENST00000514442 KBTBD6Q86V97 674 aa13.03□□□□□ -0.32
TCOF1-213ENST00000514442 ARL14EPQ8N8R7 260 aaPredicted RBP13.03□□□□□ -0.32
TCOF1-213ENST00000514442 SPPL2AQ8TCT8 520 aa13.03□□□□□ -0.32
TCOF1-213ENST00000514442 TPD52L3Q96J77 140 aa13.03□□□□□ -0.32
TCOF1-213ENST00000514442 SIRPGQ9P1W8 387 aa13.03□□□□□ -0.32
TCOF1-213ENST00000514442 KIAA1522Q9P206 1035 aaPredicted RBP13.03□□□□□ -0.32
TCOF1-213ENST00000514442 RABL2BQ9UNT1 228 aa13.03□□□□□ -0.32
TCOF1-213ENST00000514442 TNPO3Q9Y5L0 923 aaKnown RBP13.03□□□□□ -0.32
TCOF1-213ENST00000514442 G3V2T6 193 aa13.03□□□□□ -0.32
TCOF1-213ENST00000514442 ZNF701M0R085 212 aaPredicted RBP13.03□□□□□ -0.32
TCOF1-213ENST00000514442 AURKAO14965 403 aa13.03□□□□□ -0.32
TCOF1-213ENST00000514442 ENPEPQ07075 957 aa13.03□□□□□ -0.32
TCOF1-213ENST00000514442 PARP15Q460N3 678 aa13.03□□□□□ -0.32
TCOF1-213ENST00000514442 FAAH2Q6GMR7 532 aa13.03□□□□□ -0.32
TCOF1-213ENST00000514442 CTU1Q7Z7A3 348 aaKnown RBP13.03□□□□□ -0.32
TCOF1-213ENST00000514442 TUBA1CQ9BQE3 449 aa13.03□□□□□ -0.32
TCOF1-213ENST00000514442 MTPAPQ9NVV4 582 aaKnown RBP eCLIP13.03□□□□□ -0.329e-6■■□□□ 12.8
TCOF1-213ENST00000514442 ING3Q9NXR8 418 aa13.03□□□□□ -0.32
TCOF1-213ENST00000514442 ZNHIT2Q9UHR6 403 aa13.03□□□□□ -0.32
TCOF1-213ENST00000514442 ERGIC3Q9Y282 383 aa13.03□□□□□ -0.32
TCOF1-213ENST00000514442 YAP1P46937 504 aaKnown RBP13.03□□□□□ -0.32
TCOF1-213ENST00000514442 TIGD2Q4W5G0 525 aa13.03□□□□□ -0.32
TCOF1-213ENST00000514442 CHPFQ8IZ52 775 aa13.03□□□□□ -0.32
TCOF1-213ENST00000514442 SLC15A4Q8N697 577 aa13.03□□□□□ -0.32
TCOF1-213ENST00000514442 C10orf53Q8N6V4 93 aa13.03□□□□□ -0.32
TCOF1-213ENST00000514442 GLIS1Q8NBF1 620 aa13.03□□□□□ -0.32
TCOF1-213ENST00000514442 RHOJQ9H4E5 214 aa13.03□□□□□ -0.32
TCOF1-213ENST00000514442 SP140LQ9H930 580 aa13.03□□□□□ -0.32
TCOF1-213ENST00000514442 NEK6Q9HC98 313 aa13.03□□□□□ -0.32
TCOF1-213ENST00000514442 CCDC177Q9NQR7 707 aaPredicted RBP13.03□□□□□ -0.32
TCOF1-213ENST00000514442 HECAQ9UBI9 543 aaPredicted RBP13.03□□□□□ -0.32
TCOF1-213ENST00000514442 RAI2Q9Y5P3 530 aa13.03□□□□□ -0.32
TCOF1-213ENST00000514442 PTPRJQ12913 1337 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms