RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 ACOX1Q15067 660 aa11.15□□□□□ -0.62
LIMCH1-217ENST00000512946 KCTD19Q17RG1 926 aaPredicted RBP11.15□□□□□ -0.62
LIMCH1-217ENST00000512946 COL28A1Q2UY09 1125 aa11.15□□□□□ -0.62
LIMCH1-217ENST00000512946 EPHA10Q5JZY3 1008 aa11.15□□□□□ -0.62
LIMCH1-217ENST00000512946 NKAPLQ5M9Q1 402 aa11.15□□□□□ -0.62
LIMCH1-217ENST00000512946 FBXO47Q5MNV8 452 aa11.15□□□□□ -0.62
LIMCH1-217ENST00000512946 GPR158Q5T848 1215 aa11.15□□□□□ -0.62
LIMCH1-217ENST00000512946 FRRS1Q6ZNA5 592 aa11.15□□□□□ -0.62
LIMCH1-217ENST00000512946 CHSY3Q70JA7 882 aa11.15□□□□□ -0.62
LIMCH1-217ENST00000512946 SLC41A1Q8IVJ1 513 aa11.15□□□□□ -0.62
LIMCH1-217ENST00000512946 GMCL1P1Q8NEA9 526 aa11.15□□□□□ -0.62
LIMCH1-217ENST00000512946 TRUB1Q8WWH5 349 aaKnown RBP11.15□□□□□ -0.62
LIMCH1-217ENST00000512946 TRIM43Q96BQ3 446 aaPredicted RBP11.15□□□□□ -0.62
LIMCH1-217ENST00000512946 TOR3AQ9H497 397 aa11.15□□□□□ -0.62
LIMCH1-217ENST00000512946 POPDC2Q9HBU9 364 aa11.15□□□□□ -0.62
LIMCH1-217ENST00000512946 ARHGEF4Q9NR80 690 aa11.15□□□□□ -0.62
LIMCH1-217ENST00000512946 UCKL1Q9NWZ5 548 aa11.15□□□□□ -0.62
LIMCH1-217ENST00000512946 TBC1D14Q9P2M4 693 aa11.15□□□□□ -0.62
LIMCH1-217ENST00000512946 TRAPPC13A5PLN9 417 aa11.14□□□□□ -0.63
LIMCH1-217ENST00000512946 PRORSD1PA6NEY8 169 aa11.14□□□□□ -0.63
LIMCH1-217ENST00000512946 STMND1H3BQB6 276 aa11.14□□□□□ -0.63
LIMCH1-217ENST00000512946 PRKACBP22694 351 aa11.14□□□□□ -0.63
LIMCH1-217ENST00000512946 PRMT2P55345 433 aa11.14□□□□□ -0.63
LIMCH1-217ENST00000512946 TAS2R43P59537 309 aa11.14□□□□□ -0.63
LIMCH1-217ENST00000512946 SLC10A7Q0GE19 358 aa11.14□□□□□ -0.63
LIMCH1-217ENST00000512946 PEX6Q13608 980 aa11.14□□□□□ -0.63
LIMCH1-217ENST00000512946 ALG10Q5BKT4 473 aa11.14□□□□□ -0.63
LIMCH1-217ENST00000512946 AMIGO1Q86WK6 493 aa11.14□□□□□ -0.63
LIMCH1-217ENST00000512946 PDZD9Q8IXQ8 264 aa11.14□□□□□ -0.63
LIMCH1-217ENST00000512946 SAMD14Q8IZD0 417 aaPredicted RBP11.14□□□□□ -0.63
LIMCH1-217ENST00000512946 CARNMT1Q8N4J0 409 aa11.14□□□□□ -0.63
LIMCH1-217ENST00000512946 OR2L5Q8NG80 312 aa11.14□□□□□ -0.63
LIMCH1-217ENST00000512946 ELMO1Q92556 727 aa11.14□□□□□ -0.63
LIMCH1-217ENST00000512946 FAM136AQ96C01 138 aa11.14□□□□□ -0.63
LIMCH1-217ENST00000512946 CPNE2Q96FN4 548 aaPredicted RBP11.14□□□□□ -0.63
LIMCH1-217ENST00000512946 ZFP3Q96NJ6 502 aa11.14□□□□□ -0.63
LIMCH1-217ENST00000512946 NFKBIZQ9BYH8 718 aa11.14□□□□□ -0.63
LIMCH1-217ENST00000512946 HCN2Q9UL51 889 aa11.14□□□□□ -0.63
LIMCH1-217ENST00000512946 PCDHB1Q9Y5F3 818 aa11.14□□□□□ -0.63
LIMCH1-217ENST00000512946 GTPBP1O00178 669 aaKnown RBP11.14□□□□□ -0.63
LIMCH1-217ENST00000512946 RASGRP1O95267 797 aa11.14□□□□□ -0.63
LIMCH1-217ENST00000512946 MAP3K6O95382 1288 aa11.14□□□□□ -0.63
LIMCH1-217ENST00000512946 FGF1P05230 155 aa11.14□□□□□ -0.63
LIMCH1-217ENST00000512946 LINGO3P0C6S8 592 aa11.14□□□□□ -0.63
LIMCH1-217ENST00000512946 LAMP2P13473 410 aa11.14□□□□□ -0.63
LIMCH1-217ENST00000512946 CDH13P55290 713 aa11.14□□□□□ -0.63
LIMCH1-217ENST00000512946 TROAPQ12815 778 aa11.14□□□□□ -0.63
LIMCH1-217ENST00000512946 ADGRD1Q6QNK2 874 aa11.14□□□□□ -0.63
LIMCH1-217ENST00000512946 LRRN1Q6UXK5 716 aa11.14□□□□□ -0.63
LIMCH1-217ENST00000512946 ZNF782Q6ZMW2 699 aaPredicted RBP11.14□□□□□ -0.63
LIMCH1-217ENST00000512946 UBR7Q8N806 425 aa11.14□□□□□ -0.63
LIMCH1-217ENST00000512946 C2orf69Q8N8R5 385 aa11.14□□□□□ -0.63
LIMCH1-217ENST00000512946 OR52K1Q8NGK4 314 aa11.14□□□□□ -0.63
LIMCH1-217ENST00000512946 NR4A3Q92570 626 aa11.14□□□□□ -0.63
LIMCH1-217ENST00000512946 COL21A1Q96P44 957 aa11.14□□□□□ -0.63
LIMCH1-217ENST00000512946 ELOVL4Q9GZR5 314 aa11.14□□□□□ -0.63
LIMCH1-217ENST00000512946 C1orf21Q9H246 121 aa11.14□□□□□ -0.63
LIMCH1-217ENST00000512946 COQ10BQ9H8M1 238 aa11.14□□□□□ -0.63
LIMCH1-217ENST00000512946 COMMD3Q9UBI1 195 aa11.14□□□□□ -0.63
LIMCH1-217ENST00000512946 TSPAN16Q9UKR8 245 aa11.14□□□□□ -0.63
LIMCH1-217ENST00000512946 A2ML1A8K2U0 1454 aa11.14□□□□□ -0.63
LIMCH1-217ENST00000512946 INMT-MINDY4F8WBC2 141 aa11.14□□□□□ -0.63
LIMCH1-217ENST00000512946 OR2B3O76000 313 aa11.14□□□□□ -0.63
LIMCH1-217ENST00000512946 RPS3P23396 243 aaKnown RBP eCLIP11.14□□□□□ -0.63
LIMCH1-217ENST00000512946 PRKAG1P54619 331 aa11.14□□□□□ -0.63
LIMCH1-217ENST00000512946 BTBD16Q32M84 506 aa11.14□□□□□ -0.63
LIMCH1-217ENST00000512946 HHIPL2Q6UWX4 724 aa11.14□□□□□ -0.63
LIMCH1-217ENST00000512946 TSPAN33Q86UF1 283 aa11.14□□□□□ -0.63
LIMCH1-217ENST00000512946 PHF13Q86YI8 300 aaPredicted RBP11.14□□□□□ -0.63
LIMCH1-217ENST00000512946 DENND1CQ8IV53 801 aa11.14□□□□□ -0.63
LIMCH1-217ENST00000512946 VANGL1Q8TAA9 524 aaPredicted RBP11.14□□□□□ -0.63
LIMCH1-217ENST00000512946 WNT8BQ93098 351 aa11.14□□□□□ -0.63
LIMCH1-217ENST00000512946 OSGEPL1Q9H4B0 414 aa11.14□□□□□ -0.63
LIMCH1-217ENST00000512946 SPON1Q9HCB6 807 aa11.14□□□□□ -0.63
LIMCH1-217ENST00000512946 BIN3Q9NQY0 253 aa11.14□□□□□ -0.63
LIMCH1-217ENST00000512946 PNPOQ9NVS9 261 aa11.14□□□□□ -0.63
LIMCH1-217ENST00000512946 PCDHB12Q9Y5F1 795 aa11.14□□□□□ -0.63
LIMCH1-217ENST00000512946 POLR1CO15160 346 aaPredicted RBP11.14□□□□□ -0.63
LIMCH1-217ENST00000512946 CDH1P12830 882 aa11.14□□□□□ -0.63
LIMCH1-217ENST00000512946 ALDH3B2P48448 385 aa11.14□□□□□ -0.63
LIMCH1-217ENST00000512946 ATP13A4Q4VNC1 1196 aa11.14□□□□□ -0.63
LIMCH1-217ENST00000512946 IDNKQ5T6J7 187 aa11.14□□□□□ -0.63
LIMCH1-217ENST00000512946 NCEH1Q6PIU2 408 aa11.14□□□□□ -0.63
LIMCH1-217ENST00000512946 MOB2Q70IA6 237 aa11.14□□□□□ -0.63
LIMCH1-217ENST00000512946 HDAC2Q92769 488 aaKnown RBP11.14□□□□□ -0.63
LIMCH1-217ENST00000512946 KCNS3Q9BQ31 491 aa11.14□□□□□ -0.63
LIMCH1-217ENST00000512946 LRTM1Q9HBL6 345 aa11.14□□□□□ -0.63
LIMCH1-217ENST00000512946 C19orf12Q9NSK7 152 aa11.14□□□□□ -0.63
LIMCH1-217ENST00000512946 COPZ2Q9P299 210 aa11.14□□□□□ -0.63
LIMCH1-217ENST00000512946 GRID2O43424 1007 aa11.13□□□□□ -0.63
LIMCH1-217ENST00000512946 HCN1O60741 890 aa11.13□□□□□ -0.63
LIMCH1-217ENST00000512946 GADD45AP24522 165 aa11.13□□□□□ -0.63
LIMCH1-217ENST00000512946 OR1E1P30953 314 aa11.13□□□□□ -0.63
LIMCH1-217ENST00000512946 CSTF2P33240 577 aaKnown RBP eCLIP11.13□□□□□ -0.63
LIMCH1-217ENST00000512946 OR1G1P47890 313 aa11.13□□□□□ -0.63
LIMCH1-217ENST00000512946 PSMA6P60900 246 aaKnown RBP11.13□□□□□ -0.63
LIMCH1-217ENST00000512946 ZYG11AQ6WRX3 759 aa11.13□□□□□ -0.63
LIMCH1-217ENST00000512946 ASB9Q96DX5 294 aa11.13□□□□□ -0.63
LIMCH1-217ENST00000512946 CPNE5Q9HCH3 593 aa11.13□□□□□ -0.63
LIMCH1-217ENST00000512946 PTPRHQ9HD43 1115 aa11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms