RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 CAPN10Q9HC96 672 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 THUMPD1Q9NXG2 353 aaKnown RBP3.55□□□□□ -1.84
USP53-205ENST00000509769 GLTPQ9NZD2 209 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 ZSWIM5Q9P217 1185 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 SLC25A13Q9UJS0 675 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 RPL36Q9Y3U8 105 aaKnown RBP3.55□□□□□ -1.84
USP53-205ENST00000509769 PLEKHM1Q9Y4G2 1056 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 VIRMAQ69YN4 1812 aaKnown RBP3.55□□□□□ -1.84
USP53-205ENST00000509769 ZNF536O15090 1300 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 ARFGEF1Q9Y6D6 1849 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 LNP1A1A4G5 178 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 USP27XA6NNY8 438 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 A8MXE2 369 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 H7C1W4 665 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 EYA2O00167 538 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 SLC28A1O00337 649 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 CPNE3O75131 537 aaKnown RBP3.55□□□□□ -1.84
USP53-205ENST00000509769 MTX2O75431 263 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 VPS26AO75436 327 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 RFPL2O75678 378 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 ATG12O94817 140 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 MT-ND2P03891 347 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 METTL15P1P0C7V9 234 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 ANXA8P13928 327 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 CHATP28329 748 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 HOXD11P31277 338 aaPredicted RBP3.55□□□□□ -1.84
USP53-205ENST00000509769 MMP13P45452 471 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 ZNF132P52740 706 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 PNLIPRP1P54315 467 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 CDH8P55286 799 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 VSX2P58304 361 aaPredicted RBP3.55□□□□□ -1.84
USP53-205ENST00000509769 RTP1P59025 263 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 VAMP2P63027 116 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 GRAPQ13588 217 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 MXD4Q14582 209 aaPredicted RBP3.55□□□□□ -1.84
USP53-205ENST00000509769 ACOX1Q15067 660 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 FSCN1Q16658 493 aaKnown RBP3.55□□□□□ -1.84
USP53-205ENST00000509769 TSGA10IPQ3SY00 556 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 FAM46CQ5VWP2 391 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 CIAPIN1Q6FI81 312 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 FAM83HQ6ZRV2 1179 aaPredicted RBP3.55□□□□□ -1.84
USP53-205ENST00000509769 USP49Q70CQ1 688 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 ADAT2Q7Z6V5 191 aaKnown RBP3.55□□□□□ -1.84
USP53-205ENST00000509769 CPNE9Q8IYJ1 553 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 POU5F2Q8N7G0 328 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 SLC37A3Q8NCC5 494 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 PTCD2Q8WV60 388 aaKnown RBP3.55□□□□□ -1.84
USP53-205ENST00000509769 COPS5Q92905 334 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 EXT2Q93063 718 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 FAM20AQ96MK3 541 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 ALPK1Q96QP1 1244 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 ZSCAN10Q96SZ4 725 aaPredicted RBP3.55□□□□□ -1.84
USP53-205ENST00000509769 VAT1Q99536 393 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 GPR63Q9BZJ6 419 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 DPY30Q9C005 99 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 CRISPLD1Q9H336 500 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 GLOD4Q9HC38 313 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 DPP3Q9NY33 737 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 ANKMY1Q9P2S6 941 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 RIMKLBQ9ULI2 386 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 CLCA2Q9UQC9 943 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 TMEM98Q9Y2Y6 226 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 ACOT9Q9Y305 439 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 TMEM265A0A087WTH1 108 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP3.55□□□□□ -1.84
USP53-205ENST00000509769 TEX13CA0A0J9YWL9 993 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 HSFX4A0A1B0GTS1 333 aaPredicted RBP3.55□□□□□ -1.84
USP53-205ENST00000509769 HSFX3A0A1B0GWH4 333 aaPredicted RBP3.55□□□□□ -1.84
USP53-205ENST00000509769 FAM230AA0A1W2PPH8 454 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 EIF4E1BA6NMX2 242 aaKnown RBP3.55□□□□□ -1.84
USP53-205ENST00000509769 ADAMDEC1O15204 470 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 GSC2O15499 205 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 XPNPEP2O43895 674 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 UGT1A9O60656 530 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 NDUFS3O75489 264 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 SCGB2A1O75556 95 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 ARL6IP5O75915 188 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 MLYCDO95822 493 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 HEXBP07686 556 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 FGRP09769 529 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 UGT1A6P19224 532 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 RAB3BP20337 219 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 UGT1A1P22309 533 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 UGT1A4P22310 534 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 S100A7P31151 101 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 UGT1A3P35503 534 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 HNF1BP35680 557 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 CHI3L1P36222 383 aaPredicted RBP3.55□□□□□ -1.84
USP53-205ENST00000509769 VASPP50552 380 aaPredicted RBP3.55□□□□□ -1.84
USP53-205ENST00000509769 NR0B1P51843 470 aaKnown RBP3.55□□□□□ -1.84
USP53-205ENST00000509769 TAS2R31P59538 309 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 MAT1AQ00266 395 aaKnown RBP3.55□□□□□ -1.84
USP53-205ENST00000509769 CAP1Q01518 475 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 CYP27A1Q02318 531 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 RELAQ04206 551 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 ZNF844Q08AG5 666 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 SLC10A7Q0GE19 358 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 DDX39BQ13838 428 aaKnown RBP3.55□□□□□ -1.84
USP53-205ENST00000509769 CCNIQ14094 377 aa3.55□□□□□ -1.84
USP53-205ENST00000509769 ADGRE1Q14246 886 aa3.55□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms