RNA–Protein interactions for RNA: ENST00000488801.5

PTCD3-217, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 4

Gene PTCD3, Length 568 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-217ENST00000488801 GPR34Q9UPC5 381 aa18.4■□□□□ 0.54
PTCD3-217ENST00000488801 APOBEC2Q9Y235 224 aaKnown RBP18.4■□□□□ 0.54
PTCD3-217ENST00000488801 PRKAB1Q9Y478 270 aa18.4■□□□□ 0.54
PTCD3-217ENST00000488801 SNRNP200O75643 2136 aaKnown RBP18.4■□□□□ 0.54
PTCD3-217ENST00000488801 ADAMTS20P59510 1910 aa18.39■□□□□ 0.53
PTCD3-217ENST00000488801 CCDC78A2IDD5 438 aa18.39■□□□□ 0.53
PTCD3-217ENST00000488801 OR51F1A6NGY5 319 aa18.39■□□□□ 0.53
PTCD3-217ENST00000488801 AVILO75366 819 aa18.39■□□□□ 0.53
PTCD3-217ENST00000488801 RFPL3O75679 317 aa18.39■□□□□ 0.53
PTCD3-217ENST00000488801 MYF5P13349 255 aa18.39■□□□□ 0.53
PTCD3-217ENST00000488801 SARNPP82979 210 aaKnown RBP18.39■□□□□ 0.53
PTCD3-217ENST00000488801 DMPKQ09013 629 aa18.39■□□□□ 0.53
PTCD3-217ENST00000488801 HLTFQ14527 1009 aaKnown RBP eCLIP18.39■□□□□ 0.53
PTCD3-217ENST00000488801 AFTPHQ6ULP2 937 aa18.39■□□□□ 0.53
PTCD3-217ENST00000488801 NAGSQ8N159 534 aa18.39■□□□□ 0.53
PTCD3-217ENST00000488801 MPP5Q8N3R9 675 aa18.39■□□□□ 0.53
PTCD3-217ENST00000488801 SCG3Q8WXD2 468 aaKnown RBP18.39■□□□□ 0.53
PTCD3-217ENST00000488801 KRT12Q99456 494 aa18.39■□□□□ 0.53
PTCD3-217ENST00000488801 SLC23A2Q9UGH3 650 aa18.39■□□□□ 0.53
PTCD3-217ENST00000488801 ZNHIT2Q9UHR6 403 aa18.39■□□□□ 0.53
PTCD3-217ENST00000488801 CRLS1Q9UJA2 301 aa18.39■□□□□ 0.53
PTCD3-217ENST00000488801 DOLKQ9UPQ8 538 aa18.39■□□□□ 0.53
PTCD3-217ENST00000488801 GPSM3Q9Y4H4 160 aa18.39■□□□□ 0.53
PTCD3-217ENST00000488801 SLC30A1Q9Y6M5 507 aa18.39■□□□□ 0.53
PTCD3-217ENST00000488801 CHD8Q9HCK8 2581 aa18.39■□□□□ 0.53
PTCD3-217ENST00000488801 KMOO15229 486 aa18.38■□□□□ 0.53
PTCD3-217ENST00000488801 SEC31AO94979 1220 aaKnown RBP18.38■□□□□ 0.53
PTCD3-217ENST00000488801 TRIM16O95361 564 aa18.38■□□□□ 0.53
PTCD3-217ENST00000488801 ACP5P13686 325 aa18.38■□□□□ 0.53
PTCD3-217ENST00000488801 ZNF7P17097 686 aaPredicted RBP18.38■□□□□ 0.53
PTCD3-217ENST00000488801 NMBRP28336 390 aa18.38■□□□□ 0.53
PTCD3-217ENST00000488801 ACTR1BP42025 376 aa18.38■□□□□ 0.53
PTCD3-217ENST00000488801 TERF1P54274 439 aa18.38■□□□□ 0.53
PTCD3-217ENST00000488801 ACTR1AP61163 376 aa18.38■□□□□ 0.53
PTCD3-217ENST00000488801 DAB2P98082 770 aa18.38■□□□□ 0.53
PTCD3-217ENST00000488801 C2orf54Q08AI8 447 aa18.38■□□□□ 0.53
PTCD3-217ENST00000488801 NR0B2Q15466 257 aa18.38■□□□□ 0.53
PTCD3-217ENST00000488801 DBN1Q16643 649 aa18.38■□□□□ 0.53
PTCD3-217ENST00000488801 ZNF658BQ4V348 819 aaPredicted RBP18.38■□□□□ 0.53
PTCD3-217ENST00000488801 BCL7AQ4VC05 210 aa18.38■□□□□ 0.53
PTCD3-217ENST00000488801 GUSBP11Q6P575 273 aa18.38■□□□□ 0.53
PTCD3-217ENST00000488801 SLC30A9Q6PML9 568 aa18.38■□□□□ 0.53
PTCD3-217ENST00000488801 CRTC3Q6UUV7 619 aa18.38■□□□□ 0.53
PTCD3-217ENST00000488801 PACS1Q6VY07 963 aa18.38■□□□□ 0.53
PTCD3-217ENST00000488801 CHST15Q7LFX5 561 aaPredicted RBP18.38■□□□□ 0.53
PTCD3-217ENST00000488801 PCGF5Q86SE9 256 aa18.38■□□□□ 0.53
PTCD3-217ENST00000488801 SERPINA9Q86WD7 417 aa18.38■□□□□ 0.53
PTCD3-217ENST00000488801 FAM46DQ8NEK8 389 aa18.38■□□□□ 0.53
PTCD3-217ENST00000488801 GDAP1Q8TB36 358 aa18.38■□□□□ 0.53
PTCD3-217ENST00000488801 HDAC10Q969S8 669 aa18.38■□□□□ 0.53
PTCD3-217ENST00000488801 ZNF514Q96K75 400 aaPredicted RBP18.38■□□□□ 0.53
PTCD3-217ENST00000488801 SIGLEC10Q96LC7 697 aa18.38■□□□□ 0.53
PTCD3-217ENST00000488801 FAM96AQ9H5X1 160 aa18.38■□□□□ 0.53
PTCD3-217ENST00000488801 ZDHHC3Q9NYG2 299 aa18.38■□□□□ 0.53
PTCD3-217ENST00000488801 GULP1Q9UBP9 304 aa18.38■□□□□ 0.53
PTCD3-217ENST00000488801 MRFAP1Q9Y605 127 aa18.38■□□□□ 0.53
PTCD3-217ENST00000488801 FAM237BA0A1B0GVD1 139 aa18.37■□□□□ 0.53
PTCD3-217ENST00000488801 EML2O95834 649 aa18.37■□□□□ 0.53
PTCD3-217ENST00000488801 GOT2P00505 430 aaKnown RBP18.37■□□□□ 0.53
PTCD3-217ENST00000488801 CDK4P11802 303 aa18.37■□□□□ 0.53
PTCD3-217ENST00000488801 PRLHRP49683 370 aa18.37■□□□□ 0.53
PTCD3-217ENST00000488801 DUSP3P51452 185 aaPredicted RBP18.37■□□□□ 0.53
PTCD3-217ENST00000488801 CBLBQ13191 982 aa18.37■□□□□ 0.53
PTCD3-217ENST00000488801 GTF2H3Q13889 308 aa18.37■□□□□ 0.53
PTCD3-217ENST00000488801 ITIH4Q14624 930 aa18.37■□□□□ 0.53
PTCD3-217ENST00000488801 NR1D2Q14995 579 aa18.37■□□□□ 0.53
PTCD3-217ENST00000488801 MORF4L2Q15014 288 aa18.37■□□□□ 0.53
PTCD3-217ENST00000488801 WHAMMP3Q1A5X7 153 aa18.37■□□□□ 0.53
PTCD3-217ENST00000488801 C14orf28Q4W4Y0 310 aa18.37■□□□□ 0.53
PTCD3-217ENST00000488801 IZUMO3Q5VZ72 239 aa18.37■□□□□ 0.53
PTCD3-217ENST00000488801 KIAA0930Q6ICG6 404 aaPredicted RBP18.37■□□□□ 0.53
PTCD3-217ENST00000488801 HIBCHQ6NVY1 386 aaPredicted RBP18.37■□□□□ 0.53
PTCD3-217ENST00000488801 ZNF438Q7Z4V0 828 aa18.37■□□□□ 0.53
PTCD3-217ENST00000488801 ZDHHC1Q8WTX9 485 aa18.37■□□□□ 0.53
PTCD3-217ENST00000488801 HEXDCQ8WVB3 486 aa18.37■□□□□ 0.53
PTCD3-217ENST00000488801 GLMNQ92990 594 aa18.37■□□□□ 0.53
PTCD3-217ENST00000488801 NAT6Q93015 286 aa18.37■□□□□ 0.53
PTCD3-217ENST00000488801 MFSD3Q96ES6 412 aa18.37■□□□□ 0.53
PTCD3-217ENST00000488801 LINC00615Q96LM1 132 aaPredicted RBP18.37■□□□□ 0.53
PTCD3-217ENST00000488801 COPS8Q99627 209 aa18.37■□□□□ 0.53
PTCD3-217ENST00000488801 EVA1BQ9NVM1 165 aa18.37■□□□□ 0.53
PTCD3-217ENST00000488801 PADI4Q9UM07 663 aa18.37■□□□□ 0.53
PTCD3-217ENST00000488801 KCNK6Q9Y257 313 aa18.37■□□□□ 0.53
PTCD3-217ENST00000488801 DNMT3AQ9Y6K1 912 aaPredicted RBP18.37■□□□□ 0.53
PTCD3-217ENST00000488801 FAM187AA6NFU0 413 aa18.36■□□□□ 0.53
PTCD3-217ENST00000488801 B4DGG1 531 aa18.36■□□□□ 0.53
PTCD3-217ENST00000488801 GOLGA8MH3BSY2 632 aa18.36■□□□□ 0.53
PTCD3-217ENST00000488801 SMAPO00193 183 aa18.36■□□□□ 0.53
PTCD3-217ENST00000488801 RAD51CO43502 376 aa18.36■□□□□ 0.53
PTCD3-217ENST00000488801 KCNJ13O60928 360 aa18.36■□□□□ 0.53
PTCD3-217ENST00000488801 TPRP12270 2363 aaKnown RBP18.36■□□□□ 0.53
PTCD3-217ENST00000488801 MSH3P20585 1137 aa18.36■□□□□ 0.53
PTCD3-217ENST00000488801 KCNA4P22459 653 aa18.36■□□□□ 0.53
PTCD3-217ENST00000488801 AKT1P31749 480 aa18.36■□□□□ 0.53
PTCD3-217ENST00000488801 RPIAP49247 311 aa18.36■□□□□ 0.53
PTCD3-217ENST00000488801 SHC2P98077 582 aa18.36■□□□□ 0.53
PTCD3-217ENST00000488801 CKAP4Q07065 602 aaKnown RBP18.36■□□□□ 0.53
PTCD3-217ENST00000488801 SEMA3AQ14563 771 aa18.36■□□□□ 0.53
PTCD3-217ENST00000488801 SMAD1Q15797 465 aaKnown RBP18.36■□□□□ 0.53
PTCD3-217ENST00000488801 ZRANB3Q5FWF4 1079 aa18.36■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms