RNA–Protein interactions for RNA: ENST00000471307.6

CCDC39-202, Transcript of coiled-coil domain containing 39, humanhuman

TSL 3

Gene CCDC39, Length 783 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-202ENST00000471307 KLHL15Q96M94 604 aa5.41□□□□□ -1.54
CCDC39-202ENST00000471307 PGLYRP2Q96PD5 576 aa5.41□□□□□ -1.54
CCDC39-202ENST00000471307 TEX13AQ9BXU3 409 aaPredicted RBP5.41□□□□□ -1.54
CCDC39-202ENST00000471307 KCNN2Q9H2S1 579 aa5.41□□□□□ -1.54
CCDC39-202ENST00000471307 PPP1R3EQ9H7J1 279 aa5.41□□□□□ -1.54
CCDC39-202ENST00000471307 FKRPQ9H9S5 495 aa5.41□□□□□ -1.54
CCDC39-202ENST00000471307 MMP25Q9NPA2 562 aa5.41□□□□□ -1.54
CCDC39-202ENST00000471307 GPR108Q9NPR9 543 aa5.41□□□□□ -1.54
CCDC39-202ENST00000471307 HINT3Q9NQE9 182 aaKnown RBP5.41□□□□□ -1.54
CCDC39-202ENST00000471307 KCND2Q9NZV8 630 aa5.41□□□□□ -1.54
CCDC39-202ENST00000471307 TCF19Q9Y242 345 aa5.41□□□□□ -1.54
CCDC39-202ENST00000471307 KDM3BQ7LBC6 1761 aa5.4□□□□□ -1.54
CCDC39-202ENST00000471307 ITGB4P16144 1822 aa5.4□□□□□ -1.54
CCDC39-202ENST00000471307 LILRA5A6NI73 299 aa5.4□□□□□ -1.54
CCDC39-202ENST00000471307 NPHP1O15259 732 aa5.4□□□□□ -1.54
CCDC39-202ENST00000471307 HOXC11O43248 304 aaPredicted RBP5.4□□□□□ -1.54
CCDC39-202ENST00000471307 SEC14L5O43304 696 aa5.4□□□□□ -1.54
CCDC39-202ENST00000471307 DMP1Q13316 513 aaPredicted RBP5.4□□□□□ -1.54
CCDC39-202ENST00000471307 DHX8Q14562 1220 aaKnown RBP5.4□□□□□ -1.54
CCDC39-202ENST00000471307 C2orf68Q2NKX9 166 aa5.4□□□□□ -1.54
CCDC39-202ENST00000471307 PRICKLE4Q2TBC4 344 aa5.4□□□□□ -1.54
CCDC39-202ENST00000471307 EIF2S3LQ2VIR3 472 aaKnown RBP5.4□□□□□ -1.54
CCDC39-202ENST00000471307 SLC45A4Q5BKX6 768 aa5.4□□□□□ -1.54
CCDC39-202ENST00000471307 IRAK1BP1Q5VVH5 260 aa5.4□□□□□ -1.54
CCDC39-202ENST00000471307 ADAM5Q6NVV9 412 aa5.4□□□□□ -1.54
CCDC39-202ENST00000471307 TMEM219Q86XT9 240 aa5.4□□□□□ -1.54
CCDC39-202ENST00000471307 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP5.4□□□□□ -1.54
CCDC39-202ENST00000471307 C1orf87Q8N0U7 546 aa5.4□□□□□ -1.54
CCDC39-202ENST00000471307 KBTBD3Q8NAB2 608 aa5.4□□□□□ -1.54
CCDC39-202ENST00000471307 OR13A1Q8NGR1 328 aa5.4□□□□□ -1.54
CCDC39-202ENST00000471307 ARHGAP45Q92619 1136 aa5.4□□□□□ -1.54
CCDC39-202ENST00000471307 KLHL29Q96CT2 875 aa5.4□□□□□ -1.54
CCDC39-202ENST00000471307 LBHD1Q9BQE6 289 aaPredicted RBP5.4□□□□□ -1.54
CCDC39-202ENST00000471307 NDST4Q9H3R1 872 aa5.4□□□□□ -1.54
CCDC39-202ENST00000471307 FBRSL1Q9HCM7 1045 aaKnown RBP5.4□□□□□ -1.54
CCDC39-202ENST00000471307 ZNF334Q9HCZ1 680 aaPredicted RBP5.4□□□□□ -1.54
CCDC39-202ENST00000471307 SMC4Q9NTJ3 1288 aa5.4□□□□□ -1.54
CCDC39-202ENST00000471307 ZNF711Q9Y462 761 aa5.4□□□□□ -1.54
CCDC39-202ENST00000471307 PDS5AQ29RF7 1337 aaKnown RBP5.4□□□□□ -1.55
CCDC39-202ENST00000471307 USP17L23D6RBM5 183 aa5.39□□□□□ -1.55
CCDC39-202ENST00000471307 HNRNPA1P09651 372 aaKnown RBP eCLIP5.39□□□□□ -1.55
CCDC39-202ENST00000471307 HMGB2P26583 209 aaKnown RBP5.39□□□□□ -1.55
CCDC39-202ENST00000471307 FASLGP48023 281 aa5.39□□□□□ -1.55
CCDC39-202ENST00000471307 EEF1A1P68104 462 aaKnown RBP5.39□□□□□ -1.55
CCDC39-202ENST00000471307 BIRC3Q13489 604 aa5.39□□□□□ -1.55
CCDC39-202ENST00000471307 EEF1A1P5Q5VTE0 462 aa5.39□□□□□ -1.55
CCDC39-202ENST00000471307 ZNF449Q6P9G9 518 aa5.39□□□□□ -1.55
CCDC39-202ENST00000471307 C19orf48Q6RUI8 117 aa5.39□□□□□ -1.55
CCDC39-202ENST00000471307 MARK2Q7KZI7 788 aaKnown RBP5.39□□□□□ -1.55
CCDC39-202ENST00000471307 DSG4Q86SJ6 1040 aa5.39□□□□□ -1.55
CCDC39-202ENST00000471307 ODF3L1Q8IXM7 274 aa5.39□□□□□ -1.55
CCDC39-202ENST00000471307 PAF1Q8N7H5 531 aa5.39□□□□□ -1.55
CCDC39-202ENST00000471307 ABTB1Q969K4 478 aaPredicted RBP5.39□□□□□ -1.55
CCDC39-202ENST00000471307 DUX3Q96PT4 197 aa5.39□□□□□ -1.55
CCDC39-202ENST00000471307 LRRC1Q9BTT6 524 aa5.39□□□□□ -1.55
CCDC39-202ENST00000471307 TRMT61BQ9BVS5 477 aaKnown RBP5.39□□□□□ -1.55
CCDC39-202ENST00000471307 IFIH1Q9BYX4 1025 aaKnown RBP5.39□□□□□ -1.55
CCDC39-202ENST00000471307 BRF2Q9HAW0 419 aa5.39□□□□□ -1.55
CCDC39-202ENST00000471307 VEZTQ9HBM0 779 aa5.39□□□□□ -1.55
CCDC39-202ENST00000471307 LRRC4Q9HBW1 653 aa5.39□□□□□ -1.55
CCDC39-202ENST00000471307 HYPKQ9NX55 129 aa5.39□□□□□ -1.55
CCDC39-202ENST00000471307 DBF4Q9UBU7 674 aaPredicted RBP5.39□□□□□ -1.55
CCDC39-202ENST00000471307 LOXL2Q9Y4K0 774 aa5.39□□□□□ -1.55
CCDC39-202ENST00000471307 KIF16BQ96L93 1317 aa5.39□□□□□ -1.55
CCDC39-202ENST00000471307 TOGARAM1Q9Y4F4 1720 aa5.38□□□□□ -1.55
CCDC39-202ENST00000471307 A0A1W2PQM1 296 aa5.38□□□□□ -1.55
CCDC39-202ENST00000471307 WDHD1O75717 1129 aaPredicted RBP5.38□□□□□ -1.55
CCDC39-202ENST00000471307 STARD3NLO95772 234 aa5.38□□□□□ -1.55
CCDC39-202ENST00000471307 EIF2S2P20042 333 aaKnown RBP5.38□□□□□ -1.55
CCDC39-202ENST00000471307 PAX3P23760 479 aa5.38□□□□□ -1.55
CCDC39-202ENST00000471307 MARK3P27448 753 aa5.38□□□□□ -1.55
CCDC39-202ENST00000471307 BDKRB2P30411 391 aa5.38□□□□□ -1.55
CCDC39-202ENST00000471307 GNL1P36915 607 aaPredicted RBP5.38□□□□□ -1.55
CCDC39-202ENST00000471307 CDKN1AP38936 164 aa5.38□□□□□ -1.55
CCDC39-202ENST00000471307 NAE1Q13564 534 aa5.38□□□□□ -1.55
CCDC39-202ENST00000471307 USP41Q3LFD5 358 aa5.38□□□□□ -1.55
CCDC39-202ENST00000471307 C6orf141Q5SZD1 244 aa5.38□□□□□ -1.55
CCDC39-202ENST00000471307 FRG2Q64ET8 278 aa5.38□□□□□ -1.55
CCDC39-202ENST00000471307 KRTAP5-6Q6L8G9 129 aaPredicted RBP5.38□□□□□ -1.55
CCDC39-202ENST00000471307 ATF7IPQ6VMQ6 1270 aa5.38□□□□□ -1.55
CCDC39-202ENST00000471307 IL17RCQ8NAC3 791 aa5.38□□□□□ -1.55
CCDC39-202ENST00000471307 SLC20A1Q8WUM9 679 aa5.38□□□□□ -1.55
CCDC39-202ENST00000471307 FRAT1Q92837 279 aaPredicted RBP5.38□□□□□ -1.55
CCDC39-202ENST00000471307 WBP2Q969T9 261 aa5.38□□□□□ -1.55
CCDC39-202ENST00000471307 GLIS2Q9BZE0 524 aaPredicted RBP5.38□□□□□ -1.55
CCDC39-202ENST00000471307 API5Q9BZZ5 524 aaKnown RBP5.38□□□□□ -1.55
CCDC39-202ENST00000471307 PADI1Q9ULC6 663 aa5.38□□□□□ -1.55
CCDC39-202ENST00000471307 USP16Q9Y5T5 823 aa5.38□□□□□ -1.55
CCDC39-202ENST00000471307 PTPRCP08575 1304 aa5.38□□□□□ -1.55
CCDC39-202ENST00000471307 UBR2Q8IWV8 1755 aa5.37□□□□□ -1.55
CCDC39-202ENST00000471307 BRWD3Q6RI45 1802 aa5.37□□□□□ -1.55
CCDC39-202ENST00000471307 TNFSF12-TNFSF13A0A0A6YY99 330 aa5.37□□□□□ -1.55
CCDC39-202ENST00000471307 NTN3O00634 580 aaPredicted RBP5.37□□□□□ -1.55
CCDC39-202ENST00000471307 POLBP06746 335 aa5.37□□□□□ -1.55
CCDC39-202ENST00000471307 CNTFP26441 200 aa5.37□□□□□ -1.55
CCDC39-202ENST00000471307 CDAP32320 146 aa5.37□□□□□ -1.55
CCDC39-202ENST00000471307 ABCD1P33897 745 aa5.37□□□□□ -1.55
CCDC39-202ENST00000471307 DDIT3P35638 169 aa5.37□□□□□ -1.55
CCDC39-202ENST00000471307 GGT5P36269 586 aa5.37□□□□□ -1.55
CCDC39-202ENST00000471307 GNAQP50148 359 aa5.37□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms