RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 GPR26Q8NDV2 337 aa13.09□□□□□ -0.31
HMGB3-204ENST00000448905 GDAP1Q8TB36 358 aa13.09□□□□□ -0.31
HMGB3-204ENST00000448905 BRSK1Q8TDC3 778 aa13.09□□□□□ -0.31
HMGB3-204ENST00000448905 FAF2Q96CS3 445 aa13.09□□□□□ -0.31
HMGB3-204ENST00000448905 TIMM29Q9BSF4 260 aa13.09□□□□□ -0.31
HMGB3-204ENST00000448905 SLC25A51Q9H1U9 297 aa13.09□□□□□ -0.31
HMGB3-204ENST00000448905 ZNF768Q9H5H4 540 aaKnown RBP13.09□□□□□ -0.31
HMGB3-204ENST00000448905 CBX8Q9HC52 389 aa13.09□□□□□ -0.31
HMGB3-204ENST00000448905 ARFGAP3Q9NP61 516 aa13.09□□□□□ -0.31
HMGB3-204ENST00000448905 WASH6PQ9NQA3 447 aa13.09□□□□□ -0.31
HMGB3-204ENST00000448905 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP13.09□□□□□ -0.31
HMGB3-204ENST00000448905 SHOC2Q9UQ13 582 aa13.09□□□□□ -0.31
HMGB3-204ENST00000448905 POLHQ9Y253 713 aa13.09□□□□□ -0.31
HMGB3-204ENST00000448905 DNAJC16Q9Y2G8 782 aa13.09□□□□□ -0.31
HMGB3-204ENST00000448905 KCNMB2Q9Y691 235 aa13.09□□□□□ -0.31
HMGB3-204ENST00000448905 MN1Q10571 1320 aaPredicted RBP13.09□□□□□ -0.31
HMGB3-204ENST00000448905 GOLGA6L19H0YKK7 550 aa13.08□□□□□ -0.32
HMGB3-204ENST00000448905 PPP1R12AO14974 1030 aaPredicted RBP13.08□□□□□ -0.32
HMGB3-204ENST00000448905 KIAA0754O94854 1291 aa13.08□□□□□ -0.32
HMGB3-204ENST00000448905 MMP2P08253 660 aa13.08□□□□□ -0.32
HMGB3-204ENST00000448905 ARL4DP49703 201 aa13.08□□□□□ -0.32
HMGB3-204ENST00000448905 FANCCQ00597 558 aa13.08□□□□□ -0.32
HMGB3-204ENST00000448905 PDE1BQ01064 536 aa13.08□□□□□ -0.32
HMGB3-204ENST00000448905 GALNT3Q14435 633 aa13.08□□□□□ -0.32
HMGB3-204ENST00000448905 SEPT7Q16181 437 aaKnown RBP13.08□□□□□ -0.32
HMGB3-204ENST00000448905 LARP7Q4G0J3 582 aaKnown RBP eCLIP13.08□□□□□ -0.32
HMGB3-204ENST00000448905 AGAP9Q5VTM2 703 aa13.08□□□□□ -0.32
HMGB3-204ENST00000448905 ZDHHC20Q5W0Z9 365 aa13.08□□□□□ -0.32
HMGB3-204ENST00000448905 CRTC3Q6UUV7 619 aa13.08□□□□□ -0.32
HMGB3-204ENST00000448905 FAM26EQ8N5C1 309 aa13.08□□□□□ -0.32
HMGB3-204ENST00000448905 CNTD1Q8N815 330 aa13.08□□□□□ -0.32
HMGB3-204ENST00000448905 GALNT6Q8NCL4 622 aa13.08□□□□□ -0.32
HMGB3-204ENST00000448905 LRRN4Q8WUT4 740 aa13.08□□□□□ -0.32
HMGB3-204ENST00000448905 IMP4Q96G21 291 aaKnown RBP13.08□□□□□ -0.32
HMGB3-204ENST00000448905 ELMO2Q96JJ3 720 aa13.08□□□□□ -0.32
HMGB3-204ENST00000448905 AGAP3Q96P47 875 aa13.08□□□□□ -0.32
HMGB3-204ENST00000448905 FCRL4Q96PJ5 515 aa13.08□□□□□ -0.32
HMGB3-204ENST00000448905 TWSG1Q9GZX9 223 aa13.08□□□□□ -0.32
HMGB3-204ENST00000448905 SLC40A1Q9NP59 571 aa13.08□□□□□ -0.32
HMGB3-204ENST00000448905 SIDT1Q9NXL6 827 aaKnown RBP13.08□□□□□ -0.32
HMGB3-204ENST00000448905 TMEM63CQ9P1W3 806 aa13.08□□□□□ -0.32
HMGB3-204ENST00000448905 ZNF624Q9P2J8 865 aaPredicted RBP13.08□□□□□ -0.32
HMGB3-204ENST00000448905 EPHA6Q9UF33 1036 aa13.08□□□□□ -0.32
HMGB3-204ENST00000448905 SLC23A2Q9UGH3 650 aa13.08□□□□□ -0.32
HMGB3-204ENST00000448905 LNPEPQ9UIQ6 1025 aa13.08□□□□□ -0.32
HMGB3-204ENST00000448905 CROTQ9UKG9 612 aa13.08□□□□□ -0.32
HMGB3-204ENST00000448905 ADGRG1Q9Y653 693 aa13.08□□□□□ -0.32
HMGB3-204ENST00000448905 ZFC3H1O60293 1989 aaKnown RBP13.08□□□□□ -0.32
HMGB3-204ENST00000448905 COL12A1Q99715 3063 aa13.08□□□□□ -0.32
HMGB3-204ENST00000448905 HECTD1Q9ULT8 2610 aa13.07□□□□□ -0.32
HMGB3-204ENST00000448905 LRRD1A4D1F6 860 aa13.07□□□□□ -0.32
HMGB3-204ENST00000448905 ZNF487B1APH4 448 aa13.07□□□□□ -0.32
HMGB3-204ENST00000448905 APOL1O14791 398 aa13.07□□□□□ -0.32
HMGB3-204ENST00000448905 SPAG6O75602 509 aa13.07□□□□□ -0.32
HMGB3-204ENST00000448905 CREG1O75629 220 aa13.07□□□□□ -0.32
HMGB3-204ENST00000448905 SLC4A1P02730 911 aa13.07□□□□□ -0.32
HMGB3-204ENST00000448905 TPM3P06753 285 aa13.07□□□□□ -0.32
HMGB3-204ENST00000448905 FGF5P12034 268 aa13.07□□□□□ -0.32
HMGB3-204ENST00000448905 GP1BBP13224 206 aa13.07□□□□□ -0.32
HMGB3-204ENST00000448905 RPL10P27635 214 aaKnown RBP13.07□□□□□ -0.32
HMGB3-204ENST00000448905 CASP14P31944 242 aa13.07□□□□□ -0.32
HMGB3-204ENST00000448905 GFERP55789 205 aa13.07□□□□□ -0.32
HMGB3-204ENST00000448905 TMEM115Q12893 351 aaPredicted RBP13.07□□□□□ -0.32
HMGB3-204ENST00000448905 IQCB1Q15051 598 aa13.07□□□□□ -0.32
HMGB3-204ENST00000448905 PCSK7Q16549 785 aa13.07□□□□□ -0.32
HMGB3-204ENST00000448905 ZNF648Q5T619 568 aaPredicted RBP13.07□□□□□ -0.32
HMGB3-204ENST00000448905 IRGCQ6NXR0 463 aa13.07□□□□□ -0.32
HMGB3-204ENST00000448905 ASB18Q6ZVZ8 466 aa13.07□□□□□ -0.32
HMGB3-204ENST00000448905 PRSS42Q7Z5A4 293 aa13.07□□□□□ -0.32
HMGB3-204ENST00000448905 VSIG1Q86XK7 387 aa13.07□□□□□ -0.32
HMGB3-204ENST00000448905 KLHL6Q8WZ60 621 aa13.07□□□□□ -0.32
HMGB3-204ENST00000448905 RAPGEF5Q92565 580 aa13.07□□□□□ -0.32
HMGB3-204ENST00000448905 UBXN4Q92575 508 aa13.07□□□□□ -0.32
HMGB3-204ENST00000448905 GPR87Q9BY21 358 aa13.07□□□□□ -0.32
HMGB3-204ENST00000448905 ZCCHC2Q9C0B9 1178 aaKnown RBP13.07□□□□□ -0.32
HMGB3-204ENST00000448905 RAB33BQ9H082 229 aa13.07□□□□□ -0.32
HMGB3-204ENST00000448905 DEF6Q9H4E7 631 aa13.07□□□□□ -0.32
HMGB3-204ENST00000448905 ZNHIT6Q9NWK9 470 aaKnown RBP13.07□□□□□ -0.32
HMGB3-204ENST00000448905 OGFRQ9NZT2 677 aa13.07□□□□□ -0.32
HMGB3-204ENST00000448905 SCHIP1Q9P0W5 487 aaPredicted RBP13.07□□□□□ -0.32
HMGB3-204ENST00000448905 NFKBIL1Q9UBC1 381 aaPredicted RBP13.07□□□□□ -0.32
HMGB3-204ENST00000448905 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP13.07□□□□□ -0.324e-8■□□□□ 11.1
HMGB3-204ENST00000448905 SLC30A1Q9Y6M5 507 aa13.07□□□□□ -0.32
HMGB3-204ENST00000448905 C21orf140B9A014 251 aa13.06□□□□□ -0.32
HMGB3-204ENST00000448905 RFPL1O75677 317 aa13.06□□□□□ -0.32
HMGB3-204ENST00000448905 NDST3O95803 873 aa13.06□□□□□ -0.32
HMGB3-204ENST00000448905 PIRTP0C851 137 aa13.06□□□□□ -0.32
HMGB3-204ENST00000448905 BPIP17213 487 aa13.06□□□□□ -0.32
HMGB3-204ENST00000448905 NELFEP18615 380 aaKnown RBP13.06□□□□□ -0.32
HMGB3-204ENST00000448905 ARHGAP25P42331 645 aa13.06□□□□□ -0.32
HMGB3-204ENST00000448905 LEPRP48357 1165 aaKnown RBP13.06□□□□□ -0.32
HMGB3-204ENST00000448905 TAS2R40P59535 323 aa13.06□□□□□ -0.32
HMGB3-204ENST00000448905 RPS15P62841 145 aaKnown RBP13.06□□□□□ -0.32
HMGB3-204ENST00000448905 SH3BP2P78314 561 aa13.06□□□□□ -0.32
HMGB3-204ENST00000448905 ACY1Q03154 408 aa13.06□□□□□ -0.32
HMGB3-204ENST00000448905 MESDQ14696 234 aa13.06□□□□□ -0.32
HMGB3-204ENST00000448905 SLC14A2Q15849 920 aa13.06□□□□□ -0.32
HMGB3-204ENST00000448905 PLA2G4EQ3MJ16 856 aa13.06□□□□□ -0.32
HMGB3-204ENST00000448905 CAVIN1Q6NZI2 390 aaKnown RBP13.06□□□□□ -0.32
HMGB3-204ENST00000448905 FAM92BQ6ZTR7 304 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms