RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 ABCB7O75027 752 aa7.14□□□□□ -1.27
VPS53-204ENST00000437048 ASGR1P07306 291 aa7.14□□□□□ -1.27
VPS53-204ENST00000437048 GALK1P51570 392 aa7.14□□□□□ -1.27
VPS53-204ENST00000437048 RAB4BP61018 213 aa7.14□□□□□ -1.27
VPS53-204ENST00000437048 CYP20A1Q6UW02 462 aa7.14□□□□□ -1.27
VPS53-204ENST00000437048 CYP2R1Q6VVX0 501 aa7.14□□□□□ -1.27
VPS53-204ENST00000437048 CHSY3Q70JA7 882 aa7.14□□□□□ -1.27
VPS53-204ENST00000437048 GDPD1Q8N9F7 314 aa7.14□□□□□ -1.27
VPS53-204ENST00000437048 OR52B2Q96RD2 323 aa7.14□□□□□ -1.27
VPS53-204ENST00000437048 ZDHHC4Q9NPG8 344 aa7.14□□□□□ -1.27
VPS53-204ENST00000437048 ERVK-11Q9UQG0 969 aa7.14□□□□□ -1.27
VPS53-204ENST00000437048 HCN1O60741 890 aa7.14□□□□□ -1.27
VPS53-204ENST00000437048 GKN3PP0CG01 181 aa7.14□□□□□ -1.27
VPS53-204ENST00000437048 DPP6P42658 865 aa7.14□□□□□ -1.27
VPS53-204ENST00000437048 MARVELD2Q8N4S9 558 aa7.14□□□□□ -1.27
VPS53-204ENST00000437048 ATP6AP2A0A1C7CYW4 349 aa7.14□□□□□ -1.27
VPS53-204ENST00000437048 ATP6AP2O75787 350 aa7.14□□□□□ -1.27
VPS53-204ENST00000437048 GLRA2P23416 452 aa7.14□□□□□ -1.27
VPS53-204ENST00000437048 DSG3P32926 999 aa7.14□□□□□ -1.27
VPS53-204ENST00000437048 SLC5A3P53794 718 aa7.14□□□□□ -1.27
VPS53-204ENST00000437048 TAF13Q15543 124 aa7.14□□□□□ -1.27
VPS53-204ENST00000437048 MAP4K3Q8IVH8 894 aa7.14□□□□□ -1.27
VPS53-204ENST00000437048 KLHL6Q8WZ60 621 aa7.14□□□□□ -1.27
VPS53-204ENST00000437048 SEC14L1Q92503 715 aa7.14□□□□□ -1.27
VPS53-204ENST00000437048 TCRBV9S1A1TA0A576 114 aa7.13□□□□□ -1.27
VPS53-204ENST00000437048 HGFP14210 728 aa7.13□□□□□ -1.27
VPS53-204ENST00000437048 MTHFRP42898 656 aa7.13□□□□□ -1.27
VPS53-204ENST00000437048 PPP5CP53041 499 aa7.13□□□□□ -1.27
VPS53-204ENST00000437048 MAZP56270 477 aaKnown RBP7.13□□□□□ -1.27
VPS53-204ENST00000437048 GNASQ5JWF2 1037 aa7.13□□□□□ -1.27
VPS53-204ENST00000437048 ZNF280DQ6N043 979 aa7.13□□□□□ -1.27
VPS53-204ENST00000437048 RASGEF1AQ8N9B8 481 aa7.13□□□□□ -1.27
VPS53-204ENST00000437048 SLC9A6Q92581 669 aa7.13□□□□□ -1.27
VPS53-204ENST00000437048 COL21A1Q96P44 957 aa7.13□□□□□ -1.27
VPS53-204ENST00000437048 MMP19Q99542 508 aa7.13□□□□□ -1.27
VPS53-204ENST00000437048 CDHR5Q9HBB8 845 aa7.13□□□□□ -1.27
VPS53-204ENST00000437048 HCN3Q9P1Z3 774 aa7.13□□□□□ -1.27
VPS53-204ENST00000437048 PIN4Q9Y237 131 aaKnown RBP7.13□□□□□ -1.27
VPS53-204ENST00000437048 MST1RQ04912 1400 aa7.13□□□□□ -1.27
VPS53-204ENST00000437048 LATO43561 262 aa7.13□□□□□ -1.27
VPS53-204ENST00000437048 UGT1A9O60656 530 aa7.13□□□□□ -1.27
VPS53-204ENST00000437048 UGT1A6P19224 532 aa7.13□□□□□ -1.27
VPS53-204ENST00000437048 UGT1A1P22309 533 aa7.13□□□□□ -1.27
VPS53-204ENST00000437048 UGT1A4P22310 534 aa7.13□□□□□ -1.27
VPS53-204ENST00000437048 UGT1A3P35503 534 aa7.13□□□□□ -1.27
VPS53-204ENST00000437048 POLR2JP52435 117 aaKnown RBP7.13□□□□□ -1.27
VPS53-204ENST00000437048 RHOAP61586 193 aa7.13□□□□□ -1.27
VPS53-204ENST00000437048 DCST1Q5T197 706 aa7.13□□□□□ -1.27
VPS53-204ENST00000437048 DCDC5Q6ZRR9 648 aa7.13□□□□□ -1.27
VPS53-204ENST00000437048 MRPS31Q92665 395 aaKnown RBP7.13□□□□□ -1.27
VPS53-204ENST00000437048 UGT1A7Q9HAW7 530 aa7.13□□□□□ -1.27
VPS53-204ENST00000437048 UGT1A10Q9HAW8 530 aa7.13□□□□□ -1.27
VPS53-204ENST00000437048 UGT1A8Q9HAW9 530 aa7.13□□□□□ -1.27
VPS53-204ENST00000437048 MEPEQ9NQ76 525 aaPredicted RBP7.13□□□□□ -1.27
VPS53-204ENST00000437048 DENRO43583 198 aaKnown RBP7.13□□□□□ -1.27
VPS53-204ENST00000437048 OR5F1O95221 314 aa7.13□□□□□ -1.27
VPS53-204ENST00000437048 PRAMEF12O95522 483 aa7.13□□□□□ -1.27
VPS53-204ENST00000437048 GMPRP36959 345 aa7.13□□□□□ -1.27
VPS53-204ENST00000437048 PLIN5Q00G26 463 aa7.13□□□□□ -1.27
VPS53-204ENST00000437048 KLF10Q13118 480 aa7.13□□□□□ -1.27
VPS53-204ENST00000437048 WDR53Q7Z5U6 358 aaPredicted RBP7.13□□□□□ -1.27
VPS53-204ENST00000437048 GALNT12Q8IXK2 581 aa7.13□□□□□ -1.27
VPS53-204ENST00000437048 ACOX2Q99424 681 aa7.13□□□□□ -1.27
VPS53-204ENST00000437048 ZNF334Q9HCZ1 680 aaPredicted RBP7.13□□□□□ -1.27
VPS53-204ENST00000437048 SNX10Q9Y5X0 201 aa7.13□□□□□ -1.27
VPS53-204ENST00000437048 A0A1B0GVM2 712 aa7.13□□□□□ -1.27
VPS53-204ENST00000437048 TCAF2A6NFQ2 919 aa7.13□□□□□ -1.27
VPS53-204ENST00000437048 NPIPA7E9PJI5 369 aa7.13□□□□□ -1.27
VPS53-204ENST00000437048 M0R129 80 aa7.13□□□□□ -1.27
VPS53-204ENST00000437048 PLD2O14939 933 aa7.13□□□□□ -1.27
VPS53-204ENST00000437048 SLC25A12O75746 678 aa7.13□□□□□ -1.27
VPS53-204ENST00000437048 PRH1P02810 166 aa7.13□□□□□ -1.27
VPS53-204ENST00000437048 FAM163BP0C2L3 166 aa7.13□□□□□ -1.27
VPS53-204ENST00000437048 NPIPA8P0DM63 369 aa7.13□□□□□ -1.27
VPS53-204ENST00000437048 MERTKQ12866 999 aa7.13□□□□□ -1.27
VPS53-204ENST00000437048 UGT3A2Q3SY77 523 aa7.13□□□□□ -1.27
VPS53-204ENST00000437048 RXFP2Q8WXD0 754 aa7.13□□□□□ -1.27
VPS53-204ENST00000437048 WNT8BQ93098 351 aa7.13□□□□□ -1.27
VPS53-204ENST00000437048 NELFAQ9H3P2 528 aa7.13□□□□□ -1.27
VPS53-204ENST00000437048 SNTG2Q9NY99 539 aa7.13□□□□□ -1.27
VPS53-204ENST00000437048 RGS17Q9UGC6 210 aaPredicted RBP7.13□□□□□ -1.27
VPS53-204ENST00000437048 KIF1AQ12756 1690 aa7.13□□□□□ -1.27
VPS53-204ENST00000437048 GPR75-ASB3A0A0A6YYF3 556 aa7.13□□□□□ -1.27
VPS53-204ENST00000437048 ACKR2O00590 384 aa7.13□□□□□ -1.27
VPS53-204ENST00000437048 PROM1O43490 865 aa7.13□□□□□ -1.27
VPS53-204ENST00000437048 AKAP3O75969 853 aa7.13□□□□□ -1.27
VPS53-204ENST00000437048 DNTTP04053 509 aa7.13□□□□□ -1.27
VPS53-204ENST00000437048 DNAJA1P31689 397 aaKnown RBP7.13□□□□□ -1.27
VPS53-204ENST00000437048 PDX1P52945 283 aa7.13□□□□□ -1.27
VPS53-204ENST00000437048 LIMK2P53671 638 aa7.13□□□□□ -1.27
VPS53-204ENST00000437048 NOP9Q86U38 636 aaKnown RBP7.13□□□□□ -1.27
VPS53-204ENST00000437048 HIST2H2ABQ8IUE6 130 aaPredicted RBP7.13□□□□□ -1.27
VPS53-204ENST00000437048 BTBD1Q9H0C5 482 aa7.13□□□□□ -1.27
VPS53-204ENST00000437048 ABI2Q9NYB9 513 aaPredicted RBP7.13□□□□□ -1.27
VPS53-204ENST00000437048 GRHL1Q9NZI5 618 aa7.13□□□□□ -1.27
VPS53-204ENST00000437048 BTN3A1O00481 513 aa7.13□□□□□ -1.27
VPS53-204ENST00000437048 SUPT20HL2P0C7V6 817 aa7.13□□□□□ -1.27
VPS53-204ENST00000437048 HEPACAMQ14CZ8 416 aa7.13□□□□□ -1.27
VPS53-204ENST00000437048 SGO1Q5FBB7 561 aa7.13□□□□□ -1.27
VPS53-204ENST00000437048 SLC35F1Q5T1Q4 408 aa7.13□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms