RNA–Protein interactions for RNA: ENST00000418628.5

PTCD3-204, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 4

Gene PTCD3, Length 532 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-204ENST00000418628 GPR34Q9UPC5 381 aa18.4■□□□□ 0.54
PTCD3-204ENST00000418628 APOBEC2Q9Y235 224 aaKnown RBP18.4■□□□□ 0.54
PTCD3-204ENST00000418628 PRKAB1Q9Y478 270 aa18.4■□□□□ 0.54
PTCD3-204ENST00000418628 SNRNP200O75643 2136 aaKnown RBP18.4■□□□□ 0.54
PTCD3-204ENST00000418628 ADAMTS20P59510 1910 aa18.39■□□□□ 0.53
PTCD3-204ENST00000418628 CCDC78A2IDD5 438 aa18.39■□□□□ 0.53
PTCD3-204ENST00000418628 OR51F1A6NGY5 319 aa18.39■□□□□ 0.53
PTCD3-204ENST00000418628 AVILO75366 819 aa18.39■□□□□ 0.53
PTCD3-204ENST00000418628 RFPL3O75679 317 aa18.39■□□□□ 0.53
PTCD3-204ENST00000418628 MYF5P13349 255 aa18.39■□□□□ 0.53
PTCD3-204ENST00000418628 SARNPP82979 210 aaKnown RBP18.39■□□□□ 0.53
PTCD3-204ENST00000418628 DMPKQ09013 629 aa18.39■□□□□ 0.53
PTCD3-204ENST00000418628 HLTFQ14527 1009 aaKnown RBP eCLIP18.39■□□□□ 0.53
PTCD3-204ENST00000418628 AFTPHQ6ULP2 937 aa18.39■□□□□ 0.53
PTCD3-204ENST00000418628 NAGSQ8N159 534 aa18.39■□□□□ 0.53
PTCD3-204ENST00000418628 MPP5Q8N3R9 675 aa18.39■□□□□ 0.53
PTCD3-204ENST00000418628 SCG3Q8WXD2 468 aaKnown RBP18.39■□□□□ 0.53
PTCD3-204ENST00000418628 KRT12Q99456 494 aa18.39■□□□□ 0.53
PTCD3-204ENST00000418628 SLC23A2Q9UGH3 650 aa18.39■□□□□ 0.53
PTCD3-204ENST00000418628 ZNHIT2Q9UHR6 403 aa18.39■□□□□ 0.53
PTCD3-204ENST00000418628 CRLS1Q9UJA2 301 aa18.39■□□□□ 0.53
PTCD3-204ENST00000418628 DOLKQ9UPQ8 538 aa18.39■□□□□ 0.53
PTCD3-204ENST00000418628 GPSM3Q9Y4H4 160 aa18.39■□□□□ 0.53
PTCD3-204ENST00000418628 SLC30A1Q9Y6M5 507 aa18.39■□□□□ 0.53
PTCD3-204ENST00000418628 CHD8Q9HCK8 2581 aa18.39■□□□□ 0.53
PTCD3-204ENST00000418628 KMOO15229 486 aa18.38■□□□□ 0.53
PTCD3-204ENST00000418628 SEC31AO94979 1220 aaKnown RBP18.38■□□□□ 0.53
PTCD3-204ENST00000418628 TRIM16O95361 564 aa18.38■□□□□ 0.53
PTCD3-204ENST00000418628 ACP5P13686 325 aa18.38■□□□□ 0.53
PTCD3-204ENST00000418628 ZNF7P17097 686 aaPredicted RBP18.38■□□□□ 0.53
PTCD3-204ENST00000418628 NMBRP28336 390 aa18.38■□□□□ 0.53
PTCD3-204ENST00000418628 ACTR1BP42025 376 aa18.38■□□□□ 0.53
PTCD3-204ENST00000418628 TERF1P54274 439 aa18.38■□□□□ 0.53
PTCD3-204ENST00000418628 ACTR1AP61163 376 aa18.38■□□□□ 0.53
PTCD3-204ENST00000418628 DAB2P98082 770 aa18.38■□□□□ 0.53
PTCD3-204ENST00000418628 C2orf54Q08AI8 447 aa18.38■□□□□ 0.53
PTCD3-204ENST00000418628 NR0B2Q15466 257 aa18.38■□□□□ 0.53
PTCD3-204ENST00000418628 DBN1Q16643 649 aa18.38■□□□□ 0.53
PTCD3-204ENST00000418628 ZNF658BQ4V348 819 aaPredicted RBP18.38■□□□□ 0.53
PTCD3-204ENST00000418628 BCL7AQ4VC05 210 aa18.38■□□□□ 0.53
PTCD3-204ENST00000418628 GUSBP11Q6P575 273 aa18.38■□□□□ 0.53
PTCD3-204ENST00000418628 SLC30A9Q6PML9 568 aa18.38■□□□□ 0.53
PTCD3-204ENST00000418628 CRTC3Q6UUV7 619 aa18.38■□□□□ 0.53
PTCD3-204ENST00000418628 PACS1Q6VY07 963 aa18.38■□□□□ 0.53
PTCD3-204ENST00000418628 CHST15Q7LFX5 561 aaPredicted RBP18.38■□□□□ 0.53
PTCD3-204ENST00000418628 PCGF5Q86SE9 256 aa18.38■□□□□ 0.53
PTCD3-204ENST00000418628 SERPINA9Q86WD7 417 aa18.38■□□□□ 0.53
PTCD3-204ENST00000418628 FAM46DQ8NEK8 389 aa18.38■□□□□ 0.53
PTCD3-204ENST00000418628 GDAP1Q8TB36 358 aa18.38■□□□□ 0.53
PTCD3-204ENST00000418628 HDAC10Q969S8 669 aa18.38■□□□□ 0.53
PTCD3-204ENST00000418628 ZNF514Q96K75 400 aaPredicted RBP18.38■□□□□ 0.53
PTCD3-204ENST00000418628 SIGLEC10Q96LC7 697 aa18.38■□□□□ 0.53
PTCD3-204ENST00000418628 FAM96AQ9H5X1 160 aa18.38■□□□□ 0.53
PTCD3-204ENST00000418628 ZDHHC3Q9NYG2 299 aa18.38■□□□□ 0.53
PTCD3-204ENST00000418628 GULP1Q9UBP9 304 aa18.38■□□□□ 0.53
PTCD3-204ENST00000418628 MRFAP1Q9Y605 127 aa18.38■□□□□ 0.53
PTCD3-204ENST00000418628 FAM237BA0A1B0GVD1 139 aa18.37■□□□□ 0.53
PTCD3-204ENST00000418628 EML2O95834 649 aa18.37■□□□□ 0.53
PTCD3-204ENST00000418628 GOT2P00505 430 aaKnown RBP18.37■□□□□ 0.53
PTCD3-204ENST00000418628 CDK4P11802 303 aa18.37■□□□□ 0.53
PTCD3-204ENST00000418628 PRLHRP49683 370 aa18.37■□□□□ 0.53
PTCD3-204ENST00000418628 DUSP3P51452 185 aaPredicted RBP18.37■□□□□ 0.53
PTCD3-204ENST00000418628 CBLBQ13191 982 aa18.37■□□□□ 0.53
PTCD3-204ENST00000418628 GTF2H3Q13889 308 aa18.37■□□□□ 0.53
PTCD3-204ENST00000418628 ITIH4Q14624 930 aa18.37■□□□□ 0.53
PTCD3-204ENST00000418628 NR1D2Q14995 579 aa18.37■□□□□ 0.53
PTCD3-204ENST00000418628 MORF4L2Q15014 288 aa18.37■□□□□ 0.53
PTCD3-204ENST00000418628 WHAMMP3Q1A5X7 153 aa18.37■□□□□ 0.53
PTCD3-204ENST00000418628 C14orf28Q4W4Y0 310 aa18.37■□□□□ 0.53
PTCD3-204ENST00000418628 IZUMO3Q5VZ72 239 aa18.37■□□□□ 0.53
PTCD3-204ENST00000418628 KIAA0930Q6ICG6 404 aaPredicted RBP18.37■□□□□ 0.53
PTCD3-204ENST00000418628 HIBCHQ6NVY1 386 aaPredicted RBP18.37■□□□□ 0.53
PTCD3-204ENST00000418628 ZNF438Q7Z4V0 828 aa18.37■□□□□ 0.53
PTCD3-204ENST00000418628 ZDHHC1Q8WTX9 485 aa18.37■□□□□ 0.53
PTCD3-204ENST00000418628 HEXDCQ8WVB3 486 aa18.37■□□□□ 0.53
PTCD3-204ENST00000418628 GLMNQ92990 594 aa18.37■□□□□ 0.53
PTCD3-204ENST00000418628 NAT6Q93015 286 aa18.37■□□□□ 0.53
PTCD3-204ENST00000418628 MFSD3Q96ES6 412 aa18.37■□□□□ 0.53
PTCD3-204ENST00000418628 LINC00615Q96LM1 132 aaPredicted RBP18.37■□□□□ 0.53
PTCD3-204ENST00000418628 COPS8Q99627 209 aa18.37■□□□□ 0.53
PTCD3-204ENST00000418628 EVA1BQ9NVM1 165 aa18.37■□□□□ 0.53
PTCD3-204ENST00000418628 PADI4Q9UM07 663 aa18.37■□□□□ 0.53
PTCD3-204ENST00000418628 KCNK6Q9Y257 313 aa18.37■□□□□ 0.53
PTCD3-204ENST00000418628 DNMT3AQ9Y6K1 912 aaPredicted RBP18.37■□□□□ 0.53
PTCD3-204ENST00000418628 FAM187AA6NFU0 413 aa18.36■□□□□ 0.53
PTCD3-204ENST00000418628 B4DGG1 531 aa18.36■□□□□ 0.53
PTCD3-204ENST00000418628 GOLGA8MH3BSY2 632 aa18.36■□□□□ 0.53
PTCD3-204ENST00000418628 SMAPO00193 183 aa18.36■□□□□ 0.53
PTCD3-204ENST00000418628 RAD51CO43502 376 aa18.36■□□□□ 0.53
PTCD3-204ENST00000418628 KCNJ13O60928 360 aa18.36■□□□□ 0.53
PTCD3-204ENST00000418628 TPRP12270 2363 aaKnown RBP18.36■□□□□ 0.53
PTCD3-204ENST00000418628 MSH3P20585 1137 aa18.36■□□□□ 0.53
PTCD3-204ENST00000418628 KCNA4P22459 653 aa18.36■□□□□ 0.53
PTCD3-204ENST00000418628 AKT1P31749 480 aa18.36■□□□□ 0.53
PTCD3-204ENST00000418628 RPIAP49247 311 aa18.36■□□□□ 0.53
PTCD3-204ENST00000418628 SHC2P98077 582 aa18.36■□□□□ 0.53
PTCD3-204ENST00000418628 CKAP4Q07065 602 aaKnown RBP18.36■□□□□ 0.53
PTCD3-204ENST00000418628 SEMA3AQ14563 771 aa18.36■□□□□ 0.53
PTCD3-204ENST00000418628 SMAD1Q15797 465 aaKnown RBP18.36■□□□□ 0.53
PTCD3-204ENST00000418628 ZRANB3Q5FWF4 1079 aa18.36■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms