RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 OLA1Q9NTK5 396 aaKnown RBP11.85□□□□□ -0.51
HMGB1-206ENST00000405805 KLQ9UEF7 1012 aa11.85□□□□□ -0.51
HMGB1-206ENST00000405805 OGDHLQ9ULD0 1010 aa11.85□□□□□ -0.51
HMGB1-206ENST00000405805 SNX8Q9Y5X2 465 aa11.85□□□□□ -0.51
HMGB1-206ENST00000405805 NRCAMQ92823 1304 aa11.85□□□□□ -0.51
HMGB1-206ENST00000405805 CPNE3O75131 537 aaKnown RBP11.85□□□□□ -0.51
HMGB1-206ENST00000405805 RSL1D1O76021 490 aaKnown RBP11.85□□□□□ -0.51
HMGB1-206ENST00000405805 MED26O95402 600 aa11.85□□□□□ -0.51
HMGB1-206ENST00000405805 SNAI1O95863 264 aaPredicted RBP11.85□□□□□ -0.51
HMGB1-206ENST00000405805 CNPP09543 421 aaKnown RBP11.85□□□□□ -0.51
HMGB1-206ENST00000405805 SLC7A1P30825 629 aa11.85□□□□□ -0.51
HMGB1-206ENST00000405805 FSCN1Q16658 493 aaKnown RBP11.85□□□□□ -0.51
HMGB1-206ENST00000405805 FAM98BQ52LJ0 330 aaKnown RBP11.85□□□□□ -0.51
HMGB1-206ENST00000405805 ADGRG6Q86SQ4 1221 aa11.85□□□□□ -0.51
HMGB1-206ENST00000405805 OR4K2Q8NGD2 314 aa11.85□□□□□ -0.51
HMGB1-206ENST00000405805 ANKRD49Q8WVL7 239 aa11.85□□□□□ -0.51
HMGB1-206ENST00000405805 ASIC4Q96FT7 647 aa11.85□□□□□ -0.51
HMGB1-206ENST00000405805 HMCESQ96FZ2 354 aa11.85□□□□□ -0.51
HMGB1-206ENST00000405805 YME1L1Q96TA2 773 aa11.85□□□□□ -0.51
HMGB1-206ENST00000405805 CATSPERZQ9NTU4 200 aa11.85□□□□□ -0.51
HMGB1-206ENST00000405805 TRMT13Q9NUP7 481 aaKnown RBP11.85□□□□□ -0.51
HMGB1-206ENST00000405805 GALPQ9UBC7 116 aa11.85□□□□□ -0.51
HMGB1-206ENST00000405805 VPS4AQ9UN37 437 aa11.85□□□□□ -0.51
HMGB1-206ENST00000405805 IGKV6-21A0A0C4DH24 114 aa11.84□□□□□ -0.51
HMGB1-206ENST00000405805 ILVBLA1L0T0 632 aa11.84□□□□□ -0.51
HMGB1-206ENST00000405805 SEC22BO75396 215 aa11.84□□□□□ -0.51
HMGB1-206ENST00000405805 PRKACGP22612 351 aa11.84□□□□□ -0.51
HMGB1-206ENST00000405805 HOXA11P31270 313 aaPredicted RBP11.84□□□□□ -0.51
HMGB1-206ENST00000405805 RPS9P46781 194 aaKnown RBP11.84□□□□□ -0.51
HMGB1-206ENST00000405805 GNG2P59768 71 aa11.84□□□□□ -0.51
HMGB1-206ENST00000405805 RPL38P63173 70 aaKnown RBP11.84□□□□□ -0.51
HMGB1-206ENST00000405805 RUNX1T1Q06455 604 aa11.84□□□□□ -0.51
HMGB1-206ENST00000405805 ARMCX4Q5H9R4 360 aa11.84□□□□□ -0.51
HMGB1-206ENST00000405805 CPNE9Q8IYJ1 553 aa11.84□□□□□ -0.51
HMGB1-206ENST00000405805 LGI2Q8N0V4 545 aa11.84□□□□□ -0.51
HMGB1-206ENST00000405805 UBE2J2Q8N2K1 259 aa11.84□□□□□ -0.51
HMGB1-206ENST00000405805 GAB3Q8WWW8 586 aa11.84□□□□□ -0.51
HMGB1-206ENST00000405805 PROX1Q92786 737 aa11.84□□□□□ -0.51
HMGB1-206ENST00000405805 GPR21Q99679 349 aa11.84□□□□□ -0.51
HMGB1-206ENST00000405805 TM6SF2Q9BZW4 377 aa11.84□□□□□ -0.51
HMGB1-206ENST00000405805 RASSF1Q9NS23 344 aa11.84□□□□□ -0.51
HMGB1-206ENST00000405805 ALDH1A2O94788 518 aa11.84□□□□□ -0.51
HMGB1-206ENST00000405805 CPSF4O95639 269 aaKnown RBP11.84□□□□□ -0.51
HMGB1-206ENST00000405805 SNAP29O95721 258 aa11.84□□□□□ -0.51
HMGB1-206ENST00000405805 GLDCP23378 1020 aa11.84□□□□□ -0.51
HMGB1-206ENST00000405805 GJA5P36382 358 aa11.84□□□□□ -0.51
HMGB1-206ENST00000405805 CREB5Q02930 508 aa11.84□□□□□ -0.51
HMGB1-206ENST00000405805 TIGD5Q53EQ6 642 aa11.84□□□□□ -0.51
HMGB1-206ENST00000405805 SPANXN2Q5MJ10 180 aa11.84□□□□□ -0.51
HMGB1-206ENST00000405805 STEAP4Q687X5 459 aa11.84□□□□□ -0.51
HMGB1-206ENST00000405805 NIPAL1Q6NVV3 410 aa11.84□□□□□ -0.51
HMGB1-206ENST00000405805 TAPT1Q6NXT6 567 aa11.84□□□□□ -0.51
HMGB1-206ENST00000405805 DCLRE1AQ6PJP8 1040 aa11.84□□□□□ -0.51
HMGB1-206ENST00000405805 ANKRD46Q86W74 232 aa11.84□□□□□ -0.51
HMGB1-206ENST00000405805 GPSM1Q86YR5 675 aa11.84□□□□□ -0.51
HMGB1-206ENST00000405805 ATG16L2Q8NAA4 619 aa11.84□□□□□ -0.51
HMGB1-206ENST00000405805 LSM14AQ8ND56 463 aaKnown RBP11.84□□□□□ -0.51
HMGB1-206ENST00000405805 NPLOC4Q8TAT6 608 aa11.84□□□□□ -0.51
HMGB1-206ENST00000405805 GTF3C2Q8WUA4 911 aaPredicted RBP11.84□□□□□ -0.51
HMGB1-206ENST00000405805 TMEM209Q96SK2 561 aa11.84□□□□□ -0.51
HMGB1-206ENST00000405805 ADAM2Q99965 735 aa11.84□□□□□ -0.51
HMGB1-206ENST00000405805 SLC35C2Q9NQQ7 365 aa11.84□□□□□ -0.51
HMGB1-206ENST00000405805 MKS1Q9NXB0 559 aa11.84□□□□□ -0.51
HMGB1-206ENST00000405805 WBP11Q9Y2W2 641 aaKnown RBP11.84□□□□□ -0.51
HMGB1-206ENST00000405805 PCDHGC4Q9Y5F7 938 aa11.84□□□□□ -0.51
HMGB1-206ENST00000405805 OR4F21O95013 312 aa11.84□□□□□ -0.51
HMGB1-206ENST00000405805 PABPC1P11940 636 aaKnown RBP11.84□□□□□ -0.51
HMGB1-206ENST00000405805 CDH2P19022 906 aaPredicted RBP11.84□□□□□ -0.51
HMGB1-206ENST00000405805 VARSP26640 1264 aaKnown RBP11.84□□□□□ -0.51
HMGB1-206ENST00000405805 CD52P31358 61 aa11.84□□□□□ -0.51
HMGB1-206ENST00000405805 ZNF829Q3KNS6 432 aaPredicted RBP11.84□□□□□ -0.51
HMGB1-206ENST00000405805 FAM117BQ6P1L5 589 aa11.84□□□□□ -0.51
HMGB1-206ENST00000405805 PAQR3Q6TCH7 311 aa11.84□□□□□ -0.51
HMGB1-206ENST00000405805 LRRC8DQ7L1W4 858 aa11.84□□□□□ -0.51
HMGB1-206ENST00000405805 STAG3L4Q8TBR4 150 aa11.84□□□□□ -0.51
HMGB1-206ENST00000405805 FAM110BQ8TC76 370 aa11.84□□□□□ -0.51
HMGB1-206ENST00000405805 SNX19Q92543 992 aa11.84□□□□□ -0.51
HMGB1-206ENST00000405805 C16orf70Q9BSU1 422 aa11.84□□□□□ -0.51
HMGB1-206ENST00000405805 MARCH4Q9P2E8 410 aaPredicted RBP11.84□□□□□ -0.51
HMGB1-206ENST00000405805 C2orf81A6NN90 581 aa11.83□□□□□ -0.52
HMGB1-206ENST00000405805 VILLO15195 856 aa11.83□□□□□ -0.52
HMGB1-206ENST00000405805 GOT2P00505 430 aaKnown RBP11.83□□□□□ -0.52
HMGB1-206ENST00000405805 CST1P01037 141 aa11.83□□□□□ -0.52
HMGB1-206ENST00000405805 NTRK1P04629 796 aa11.83□□□□□ -0.52
HMGB1-206ENST00000405805 IL7RP16871 459 aa11.83□□□□□ -0.52
HMGB1-206ENST00000405805 ZNF37AP17032 561 aaPredicted RBP11.83□□□□□ -0.52
HMGB1-206ENST00000405805 ITIH1P19827 911 aa11.83□□□□□ -0.52
HMGB1-206ENST00000405805 GABRB3P28472 473 aa11.83□□□□□ -0.52
HMGB1-206ENST00000405805 ARSDP51689 593 aa11.83□□□□□ -0.52
HMGB1-206ENST00000405805 FXNQ16595 210 aa11.83□□□□□ -0.52
HMGB1-206ENST00000405805 AP5B1Q2VPB7 878 aa11.83□□□□□ -0.52
HMGB1-206ENST00000405805 RORBQ92753 470 aa11.83□□□□□ -0.52
HMGB1-206ENST00000405805 FAM120BQ96EK7 910 aaKnown RBP11.83□□□□□ -0.52
HMGB1-206ENST00000405805 PAWRQ96IZ0 340 aaKnown RBP11.83□□□□□ -0.52
HMGB1-206ENST00000405805 SYTL2Q9HCH5 934 aa11.83□□□□□ -0.52
HMGB1-206ENST00000405805 AMBNQ9NP70 447 aa11.83□□□□□ -0.52
HMGB1-206ENST00000405805 FAM105AQ9NUU6 356 aa11.83□□□□□ -0.52
HMGB1-206ENST00000405805 FAM32AQ9Y421 112 aaKnown RBP11.83□□□□□ -0.52
HMGB1-206ENST00000405805 SPO11Q9Y5K1 396 aa11.83□□□□□ -0.52
HMGB1-206ENST00000405805 SESN1Q9Y6P5 492 aa11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms