RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 CAPRIN1Q14444 709 aaKnown RBP20.6■□□□□ 0.89
CCDC88B-203ENST00000359902 COQ5Q5HYK3 327 aa20.6■□□□□ 0.89
CCDC88B-203ENST00000359902 GPRIN3Q6ZVF9 776 aa20.6■□□□□ 0.89
CCDC88B-203ENST00000359902 DCAF4L2Q8NA75 395 aa20.6■□□□□ 0.89
CCDC88B-203ENST00000359902 TSPEARQ8WU66 669 aa20.6■□□□□ 0.89
CCDC88B-203ENST00000359902 ZUFSPQ96AP4 578 aa20.6■□□□□ 0.89
CCDC88B-203ENST00000359902 LRRC58Q96CX6 371 aa20.6■□□□□ 0.89
CCDC88B-203ENST00000359902 CCDC97Q96F63 343 aaPredicted RBP20.6■□□□□ 0.89
CCDC88B-203ENST00000359902 CENPKQ9BS16 269 aa20.6■□□□□ 0.89
CCDC88B-203ENST00000359902 TM6SF2Q9BZW4 377 aa20.6■□□□□ 0.89
CCDC88B-203ENST00000359902 COQ10BQ9H8M1 238 aa20.6■□□□□ 0.89
CCDC88B-203ENST00000359902 GID8Q9NWU2 228 aa20.6■□□□□ 0.89
CCDC88B-203ENST00000359902 CMTM6Q9NX76 183 aa20.6■□□□□ 0.89
CCDC88B-203ENST00000359902 AK5Q9Y6K8 562 aa20.6■□□□□ 0.89
CCDC88B-203ENST00000359902 TANC1Q9C0D5 1861 aa20.6■□□□□ 0.89
CCDC88B-203ENST00000359902 ANKRD12Q6UB98 2062 aa20.6■□□□□ 0.89
CCDC88B-203ENST00000359902 OR4F21O95013 312 aa20.6■□□□□ 0.89
CCDC88B-203ENST00000359902 ATP6V1B2P21281 511 aa20.6■□□□□ 0.89
CCDC88B-203ENST00000359902 SLC6A2P23975 617 aa20.6■□□□□ 0.89
CCDC88B-203ENST00000359902 ZFP36L2P47974 494 aaKnown RBP20.6■□□□□ 0.89
CCDC88B-203ENST00000359902 AP1S1P61966 158 aa20.6■□□□□ 0.89
CCDC88B-203ENST00000359902 GK3PQ14409 553 aa20.6■□□□□ 0.89
CCDC88B-203ENST00000359902 TXNDC8Q6A555 127 aa20.6■□□□□ 0.89
CCDC88B-203ENST00000359902 APCDD1Q8J025 514 aa20.6■□□□□ 0.89
CCDC88B-203ENST00000359902 OR2T34Q8NGX1 318 aa20.6■□□□□ 0.89
CCDC88B-203ENST00000359902 OR6K2Q8NGY2 324 aa20.6■□□□□ 0.89
CCDC88B-203ENST00000359902 OR2T3Q8NH03 318 aa20.6■□□□□ 0.89
CCDC88B-203ENST00000359902 MYO19Q96H55 970 aa20.6■□□□□ 0.89
CCDC88B-203ENST00000359902 TMEM169Q96HH4 297 aa20.6■□□□□ 0.89
CCDC88B-203ENST00000359902 CNBD2Q96M20 576 aa20.6■□□□□ 0.89
CCDC88B-203ENST00000359902 SNX13Q9Y5W8 968 aa20.6■□□□□ 0.89
CCDC88B-203ENST00000359902 A0A1W2PP18 115 aa20.59■□□□□ 0.89
CCDC88B-203ENST00000359902 TYW5A2RUC4 315 aaKnown RBP20.59■□□□□ 0.89
CCDC88B-203ENST00000359902 SMAD6O43541 496 aaKnown RBP20.59■□□□□ 0.89
CCDC88B-203ENST00000359902 PARNO95453 639 aaKnown RBP20.59■□□□□ 0.89
CCDC88B-203ENST00000359902 BMP1P13497 986 aa20.59■□□□□ 0.89
CCDC88B-203ENST00000359902 HSD17B1P14061 328 aa20.59■□□□□ 0.89
CCDC88B-203ENST00000359902 GRIA3P42263 894 aa20.59■□□□□ 0.89
CCDC88B-203ENST00000359902 EPHB3P54753 998 aa20.59■□□□□ 0.89
CCDC88B-203ENST00000359902 IKBKEQ14164 716 aa20.59■□□□□ 0.89
CCDC88B-203ENST00000359902 HMBOX1Q6NT76 420 aa20.59■□□□□ 0.89
CCDC88B-203ENST00000359902 CERS6Q6ZMG9 384 aa20.59■□□□□ 0.89
CCDC88B-203ENST00000359902 SLC39A11Q8N1S5 342 aa20.59■□□□□ 0.89
CCDC88B-203ENST00000359902 OR52B6Q8NGF0 335 aa20.59■□□□□ 0.89
CCDC88B-203ENST00000359902 AUTS2Q8WXX7 1259 aa20.59■□□□□ 0.89
CCDC88B-203ENST00000359902 TBRG4Q969Z0 631 aaKnown RBP eCLIP20.59■□□□□ 0.89
CCDC88B-203ENST00000359902 ZNF382Q96SR6 550 aa20.59■□□□□ 0.89
CCDC88B-203ENST00000359902 CNOT6Q9ULM6 557 aaKnown RBP20.59■□□□□ 0.89
CCDC88B-203ENST00000359902 PCDHB1Q9Y5F3 818 aa20.59■□□□□ 0.89
CCDC88B-203ENST00000359902 COL4A6Q14031 1691 aa20.59■□□□□ 0.89
CCDC88B-203ENST00000359902 ZNF839A8K0R7 811 aa20.59■□□□□ 0.89
CCDC88B-203ENST00000359902 GAPDHSO14556 408 aaPredicted RBP20.59■□□□□ 0.89
CCDC88B-203ENST00000359902 GIPC1O14908 333 aa20.59■□□□□ 0.89
CCDC88B-203ENST00000359902 AHCYL1O43865 530 aa20.59■□□□□ 0.89
CCDC88B-203ENST00000359902 STAMBPO95630 424 aa20.59■□□□□ 0.89
CCDC88B-203ENST00000359902 SMIM18P0DKX4 95 aa20.59■□□□□ 0.89
CCDC88B-203ENST00000359902 CA5AP35218 305 aa20.59■□□□□ 0.89
CCDC88B-203ENST00000359902 ERVPABLB-1P60509 514 aa20.59■□□□□ 0.89
CCDC88B-203ENST00000359902 RCAN2Q14206 197 aa20.59■□□□□ 0.89
CCDC88B-203ENST00000359902 IRAK1BP1Q5VVH5 260 aa20.59■□□□□ 0.89
CCDC88B-203ENST00000359902 TCEAL8Q8IYN2 117 aa20.59■□□□□ 0.89
CCDC88B-203ENST00000359902 CDYL2Q8N8U2 506 aa20.59■□□□□ 0.89
CCDC88B-203ENST00000359902 DCBLD1Q8N8Z6 715 aa20.59■□□□□ 0.89
CCDC88B-203ENST00000359902 ZNF296Q8WUU4 475 aaPredicted RBP20.59■□□□□ 0.89
CCDC88B-203ENST00000359902 CANT1Q8WVQ1 401 aa20.59■□□□□ 0.89
CCDC88B-203ENST00000359902 DEFB118Q96PH6 123 aa20.59■□□□□ 0.89
CCDC88B-203ENST00000359902 EFHD1Q9BUP0 239 aa20.59■□□□□ 0.89
CCDC88B-203ENST00000359902 BRINP2Q9C0B6 783 aa20.59■□□□□ 0.89
CCDC88B-203ENST00000359902 IL21Q9HBE4 155 aa20.59■□□□□ 0.89
CCDC88B-203ENST00000359902 GPBP1L1Q9HC44 474 aaPredicted RBP20.59■□□□□ 0.89
CCDC88B-203ENST00000359902 NUDT4Q9NZJ9 180 aa20.59■□□□□ 0.89
CCDC88B-203ENST00000359902 INSL5Q9Y5Q6 135 aa20.59■□□□□ 0.89
CCDC88B-203ENST00000359902 CPQQ9Y646 472 aa20.59■□□□□ 0.89
CCDC88B-203ENST00000359902 C7orf72A4D263 438 aa20.58■□□□□ 0.89
CCDC88B-203ENST00000359902 ASPDHA6ND91 283 aa20.58■□□□□ 0.89
CCDC88B-203ENST00000359902 H0YJX3 145 aa20.58■□□□□ 0.89
CCDC88B-203ENST00000359902 OLFM2O95897 454 aa20.58■□□□□ 0.89
CCDC88B-203ENST00000359902 APLP1P51693 650 aa20.58■□□□□ 0.89
CCDC88B-203ENST00000359902 NRF1Q16656 503 aa20.58■□□□□ 0.89
CCDC88B-203ENST00000359902 FAM151BQ6UXP7 276 aa20.58■□□□□ 0.89
CCDC88B-203ENST00000359902 AMIGO2Q86SJ2 522 aa20.58■□□□□ 0.89
CCDC88B-203ENST00000359902 SERPINA9Q86WD7 417 aa20.58■□□□□ 0.89
CCDC88B-203ENST00000359902 VPS33AQ96AX1 596 aa20.58■□□□□ 0.89
CCDC88B-203ENST00000359902 ZNF558Q96NG5 402 aa20.58■□□□□ 0.89
CCDC88B-203ENST00000359902 CDK15Q96Q40 435 aa20.58■□□□□ 0.89
CCDC88B-203ENST00000359902 PFDN4Q9NQP4 134 aa20.58■□□□□ 0.89
CCDC88B-203ENST00000359902 ARMC1Q9NVT9 282 aa20.58■□□□□ 0.89
CCDC88B-203ENST00000359902 PCDHA9Q9Y5H5 950 aa20.58■□□□□ 0.89
CCDC88B-203ENST00000359902 PLXNA4Q9HCM2 1894 aa20.58■□□□□ 0.89
CCDC88B-203ENST00000359902 FKTNO75072 461 aa20.58■□□□□ 0.88
CCDC88B-203ENST00000359902 UFM1P61960 85 aa20.58■□□□□ 0.88
CCDC88B-203ENST00000359902 FOXM1Q08050 763 aa20.58■□□□□ 0.88
CCDC88B-203ENST00000359902 C18orf21Q32NC0 220 aaPredicted RBP20.58■□□□□ 0.88
CCDC88B-203ENST00000359902 MTX3Q5HYI7 312 aa20.58■□□□□ 0.88
CCDC88B-203ENST00000359902 ANKRD33Q7Z3H0 272 aa20.58■□□□□ 0.88
CCDC88B-203ENST00000359902 TMCO2Q7Z6W1 182 aaPredicted RBP20.58■□□□□ 0.88
CCDC88B-203ENST00000359902 FAM217AQ8IXS0 508 aa20.58■□□□□ 0.88
CCDC88B-203ENST00000359902 TTC16Q8NEE8 873 aa20.58■□□□□ 0.88
CCDC88B-203ENST00000359902 GRIN3AQ8TCU5 1115 aa20.58■□□□□ 0.88
CCDC88B-203ENST00000359902 NAT14Q8WUY8 206 aa20.58■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms