RNA–Protein interactions for RNA: ENST00000356922.5

LIG4-201, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-201ENST00000356922 EPS8L3Q8TE67 593 aaKnown RBP3.98□□□□□ -1.77
LIG4-201ENST00000356922 PATE1Q8WXA2 126 aa3.98□□□□□ -1.77
LIG4-201ENST00000356922 LRRC39Q96DD0 335 aa3.98□□□□□ -1.77
LIG4-201ENST00000356922 PPP1R2P1Q96PQ5 205 aa3.98□□□□□ -1.77
LIG4-201ENST00000356922 P2RY12Q9H244 342 aa3.98□□□□□ -1.77
LIG4-201ENST00000356922 PKD2L2Q9NZM6 624 aa3.98□□□□□ -1.77
LIG4-201ENST00000356922 MOSPD1Q9UJG1 213 aa3.98□□□□□ -1.77
LIG4-201ENST00000356922 RAB23Q9ULC3 237 aa3.98□□□□□ -1.77
LIG4-201ENST00000356922 SUFUQ9UMX1 484 aa3.98□□□□□ -1.77
LIG4-201ENST00000356922 ANKRD6Q9Y2G4 727 aa3.98□□□□□ -1.77
LIG4-201ENST00000356922 WDR37Q9Y2I8 494 aa3.98□□□□□ -1.77
LIG4-201ENST00000356922 PCDHGA2Q9Y5H1 932 aa3.98□□□□□ -1.77
LIG4-201ENST00000356922 RALGAPA1Q6GYQ0 2036 aa3.98□□□□□ -1.77
LIG4-201ENST00000356922 PCNX2A6NKB5 2137 aa3.97□□□□□ -1.77
LIG4-201ENST00000356922 UQCRHLA0A096LP55 91 aa3.97□□□□□ -1.77
LIG4-201ENST00000356922 A0A1W2PPM1 405 aa3.97□□□□□ -1.77
LIG4-201ENST00000356922 POC1B-GALNT4F8VUJ3 575 aa3.97□□□□□ -1.77
LIG4-201ENST00000356922 TLR4O00206 839 aa3.97□□□□□ -1.77
LIG4-201ENST00000356922 CDK14O94921 469 aa3.97□□□□□ -1.77
LIG4-201ENST00000356922 UQCRHP07919 91 aa3.97□□□□□ -1.77
LIG4-201ENST00000356922 RPL10P27635 214 aaKnown RBP3.97□□□□□ -1.77
LIG4-201ENST00000356922 CCR7P32248 378 aa3.97□□□□□ -1.77
LIG4-201ENST00000356922 KCNC1P48547 511 aa3.97□□□□□ -1.77
LIG4-201ENST00000356922 CSE1LP55060 971 aaKnown RBP3.97□□□□□ -1.77
LIG4-201ENST00000356922 TYSND1Q2T9J0 566 aa3.97□□□□□ -1.77
LIG4-201ENST00000356922 LYSMD4Q5XG99 296 aa3.97□□□□□ -1.77
LIG4-201ENST00000356922 CRTC3Q6UUV7 619 aa3.97□□□□□ -1.77
LIG4-201ENST00000356922 ADAMTSL4Q6UY14 1074 aa3.97□□□□□ -1.77
LIG4-201ENST00000356922 ASCL5Q7RTU5 278 aa3.97□□□□□ -1.77
LIG4-201ENST00000356922 CMC1Q7Z7K0 106 aa3.97□□□□□ -1.77
LIG4-201ENST00000356922 GATAD2AQ86YP4 633 aa3.97□□□□□ -1.77
LIG4-201ENST00000356922 CNTN4Q8IWV2 1026 aa3.97□□□□□ -1.77
LIG4-201ENST00000356922 NRSN1Q8IZ57 195 aa3.97□□□□□ -1.77
LIG4-201ENST00000356922 PPM1NQ8N819 430 aa3.97□□□□□ -1.77
LIG4-201ENST00000356922 C2CD4AQ8NCU7 369 aaPredicted RBP3.97□□□□□ -1.77
LIG4-201ENST00000356922 GDAP1Q8TB36 358 aa3.97□□□□□ -1.77
LIG4-201ENST00000356922 DCAKDQ8WVC6 231 aa3.97□□□□□ -1.77
LIG4-201ENST00000356922 ANKRD49Q8WVL7 239 aa3.97□□□□□ -1.77
LIG4-201ENST00000356922 UBLCP1Q8WVY7 318 aaPredicted RBP3.97□□□□□ -1.77
LIG4-201ENST00000356922 HIC2Q96JB3 615 aa3.97□□□□□ -1.77
LIG4-201ENST00000356922 FRMD8Q9BZ67 464 aaPredicted RBP3.97□□□□□ -1.77
LIG4-201ENST00000356922 WDR26Q9H7D7 661 aa3.97□□□□□ -1.77
LIG4-201ENST00000356922 CYP4F12Q9HCS2 524 aa3.97□□□□□ -1.77
LIG4-201ENST00000356922 CATSPERZQ9NTU4 200 aa3.97□□□□□ -1.77
LIG4-201ENST00000356922 RYDENQ9NUL5 291 aaKnown RBP3.97□□□□□ -1.77
LIG4-201ENST00000356922 ZNF358Q9NW07 568 aa3.97□□□□□ -1.77
LIG4-201ENST00000356922 EURLQ9NYK6 297 aa3.97□□□□□ -1.77
LIG4-201ENST00000356922 SCHIP1Q9P0W5 487 aaPredicted RBP3.97□□□□□ -1.77
LIG4-201ENST00000356922 TBK1Q9UHD2 729 aa3.97□□□□□ -1.77
LIG4-201ENST00000356922 CIDEBQ9UHD4 219 aa3.97□□□□□ -1.77
LIG4-201ENST00000356922 TSR3Q9UJK0 312 aaKnown RBP3.97□□□□□ -1.77
LIG4-201ENST00000356922 CDYLQ9Y232 598 aa3.97□□□□□ -1.77
LIG4-201ENST00000356922 TRBV23OR9-2A0A075B6M9 112 aa3.97□□□□□ -1.77
LIG4-201ENST00000356922 SMIM23A6NLE4 172 aa3.97□□□□□ -1.77
LIG4-201ENST00000356922 MEI4A8MW99 385 aa3.97□□□□□ -1.77
LIG4-201ENST00000356922 FPGTO14772 594 aa3.97□□□□□ -1.77
LIG4-201ENST00000356922 CHUKO15111 745 aa3.97□□□□□ -1.77
LIG4-201ENST00000356922 ZNF189O75820 626 aaPredicted RBP3.97□□□□□ -1.77
LIG4-201ENST00000356922 BRAFP15056 766 aa3.97□□□□□ -1.77
LIG4-201ENST00000356922 HADHAP40939 763 aa3.97□□□□□ -1.77
LIG4-201ENST00000356922 LEPRP48357 1165 aaKnown RBP3.97□□□□□ -1.77
LIG4-201ENST00000356922 RACK1P63244 317 aaKnown RBP3.97□□□□□ -1.77
LIG4-201ENST00000356922 CACNG1Q06432 222 aa3.97□□□□□ -1.77
LIG4-201ENST00000356922 COL9A2Q14055 689 aaPredicted RBP3.97□□□□□ -1.77
LIG4-201ENST00000356922 NFE2L1Q14494 772 aa3.97□□□□□ -1.77
LIG4-201ENST00000356922 STAT4Q14765 748 aa3.97□□□□□ -1.77
LIG4-201ENST00000356922 ZXDCQ2QGD7 858 aaPredicted RBP3.97□□□□□ -1.77
LIG4-201ENST00000356922 DNAJC21Q5F1R6 531 aaKnown RBP3.97□□□□□ -1.77
LIG4-201ENST00000356922 SPANXN3Q5MJ09 141 aa3.97□□□□□ -1.77
LIG4-201ENST00000356922 PLA2G2CQ5R387 149 aa3.97□□□□□ -1.77
LIG4-201ENST00000356922 MROH9Q5TGP6 573 aa3.97□□□□□ -1.77
LIG4-201ENST00000356922 TMEM220Q6QAJ8 160 aa3.97□□□□□ -1.77
LIG4-201ENST00000356922 CHST15Q7LFX5 561 aaPredicted RBP3.97□□□□□ -1.77
LIG4-201ENST00000356922 MTERF4Q7Z6M4 381 aaKnown RBP3.97□□□□□ -1.77
LIG4-201ENST00000356922 STRA8Q7Z7C7 330 aa3.97□□□□□ -1.77
LIG4-201ENST00000356922 ZC3HC1Q86WB0 502 aaKnown RBP3.97□□□□□ -1.77
LIG4-201ENST00000356922 EIF1ADQ8N9N8 165 aaKnown RBP3.97□□□□□ -1.77
LIG4-201ENST00000356922 DDHD1Q8NEL9 900 aa3.97□□□□□ -1.77
LIG4-201ENST00000356922 GPR150Q8NGU9 434 aa3.97□□□□□ -1.77
LIG4-201ENST00000356922 MZB1Q8WU39 189 aa3.97□□□□□ -1.77
LIG4-201ENST00000356922 ASB12Q8WXK4 309 aa3.97□□□□□ -1.77
LIG4-201ENST00000356922 DLG3Q92796 817 aa3.97□□□□□ -1.77
LIG4-201ENST00000356922 CAVIN3Q969G5 261 aa3.97□□□□□ -1.77
LIG4-201ENST00000356922 MOCOSQ96EN8 888 aa3.97□□□□□ -1.77
LIG4-201ENST00000356922 SGSM3Q96HU1 749 aa3.97□□□□□ -1.77
LIG4-201ENST00000356922 SPACA7Q96KW9 195 aa3.97□□□□□ -1.77
LIG4-201ENST00000356922 ZSCAN5AQ9BUG6 496 aa3.97□□□□□ -1.77
LIG4-201ENST00000356922 FUT8Q9BYC5 575 aa3.97□□□□□ -1.77
LIG4-201ENST00000356922 FAM126AQ9BYI3 521 aaPredicted RBP3.97□□□□□ -1.77
LIG4-201ENST00000356922 ACSS3Q9H6R3 686 aa3.97□□□□□ -1.77
LIG4-201ENST00000356922 CAPN10Q9HC96 672 aa3.97□□□□□ -1.77
LIG4-201ENST00000356922 TRIM39Q9HCM9 518 aa3.97□□□□□ -1.77
LIG4-201ENST00000356922 NFKBIL1Q9UBC1 381 aaPredicted RBP3.97□□□□□ -1.77
LIG4-201ENST00000356922 APPL1Q9UKG1 709 aa3.97□□□□□ -1.77
LIG4-201ENST00000356922 RIMKLBQ9ULI2 386 aa3.97□□□□□ -1.77
LIG4-201ENST00000356922 SLC17A4Q9Y2C5 497 aa3.97□□□□□ -1.77
LIG4-201ENST00000356922 DNAJC16Q9Y2G8 782 aa3.97□□□□□ -1.77
LIG4-201ENST00000356922 HS3ST3A1Q9Y663 406 aa3.97□□□□□ -1.77
LIG4-201ENST00000356922 NCOR2Q9Y618 2525 aa3.97□□□□□ -1.77
LIG4-201ENST00000356922 LRP4O75096 1905 aa3.97□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms