RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 TNFAIP2Q03169 654 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 EMX2Q04743 252 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 VAC14Q08AM6 782 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 DGCR6Q14129 220 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 ACOX1Q15067 660 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 RPS6KA2Q15349 733 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 COLEC12Q5KU26 742 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 HECTD2Q5U5R9 776 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 ZNF691Q5VV52 312 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 KIAA0930Q6ICG6 404 aaPredicted RBP6.73□□□□□ -1.33
VPS39-202ENST00000348544 EFCAB12Q6NXP0 572 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 ENPP6Q6UWR7 440 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 PRSS48Q7RTY5 328 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 KDELC2Q7Z4H8 507 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 TMEM179BQ7Z7N9 219 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 LDB1Q86U70 411 aaPredicted RBP6.73□□□□□ -1.33
VPS39-202ENST00000348544 PROSER1Q86XN7 944 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 DCP2Q8IU60 420 aaKnown RBP6.73□□□□□ -1.33
VPS39-202ENST00000348544 ZDHHC13Q8IUH4 622 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 TMEM199Q8N511 208 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 CELF2-AS1Q8N7Q2 184 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 PTGR2Q8N8N7 351 aaPredicted RBP6.73□□□□□ -1.33
VPS39-202ENST00000348544 ZNF555Q8NEP9 628 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 PPHLN1Q8NEY8 458 aaKnown RBP6.73□□□□□ -1.33
VPS39-202ENST00000348544 FBLIM1Q8WUP2 373 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 CHAC2Q8WUX2 184 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 NUDT8Q8WV74 236 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 ATL1Q8WXF7 558 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 RORBQ92753 470 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 WNT8BQ93098 351 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 FAM167AQ96KS9 214 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 RDH12Q96NR8 316 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 CYP2S1Q96SQ9 504 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 CDK5RAP1Q96SZ6 601 aaKnown RBP6.73□□□□□ -1.33
VPS39-202ENST00000348544 ARPC5LQ9BPX5 153 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 TEX13BQ9BXU2 312 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 ATXN3LQ9H3M9 355 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 PRMT7Q9NVM4 692 aaPredicted RBP6.73□□□□□ -1.33
VPS39-202ENST00000348544 OPTCQ9UBM4 332 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 NEUROG3Q9Y4Z2 214 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 N6AMT1Q9Y5N5 214 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 CITO14578 2027 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 LOC100130705A0A1B0GUX0 176 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 FAM172BPA6NC97 362 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 PABPN1LA6NDY0 278 aaKnown RBP6.73□□□□□ -1.33
VPS39-202ENST00000348544 PRMT5O14744 637 aaPredicted RBP6.73□□□□□ -1.33
VPS39-202ENST00000348544 MTSS1O43312 755 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 IDH3BO43837 385 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 SSX4O60224 188 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 GOT2P00505 430 aaKnown RBP6.73□□□□□ -1.33
VPS39-202ENST00000348544 PRR35P0CG20 571 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 PTPRAP18433 802 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 DNAJB2P25686 324 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 GTF2E2P29084 291 aaKnown RBP6.73□□□□□ -1.33
VPS39-202ENST00000348544 FMO3P31513 532 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 ADRA1AP35348 466 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 TGFBR2P37173 567 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 RABGGTBP53611 331 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 BACE1P56817 501 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 KCNK10P57789 538 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 MTPNP58546 118 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 NFKB2Q00653 900 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 TSPY1Q01534 308 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 CDK5R2Q13319 367 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 TOP3AQ13472 1001 aaPredicted RBP6.73□□□□□ -1.33
VPS39-202ENST00000348544 CLCA4Q14CN2 919 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 PLA2G4EQ3MJ16 856 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 CCDC58Q4VC31 144 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 NEK10Q6ZWH5 1172 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 PDZD4Q76G19 769 aaPredicted RBP6.73□□□□□ -1.33
VPS39-202ENST00000348544 OR52K2Q8NGK3 314 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 ITFG1Q8TB96 612 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 VAT1Q99536 393 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 FDXACB1Q9BRP7 624 aaPredicted RBP6.73□□□□□ -1.33
VPS39-202ENST00000348544 LRRC3Q9BY71 257 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 FAM49AQ9H0Q0 323 aaPredicted RBP6.73□□□□□ -1.33
VPS39-202ENST00000348544 AIG1Q9NVV5 245 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 USE1Q9NZ43 259 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 TMEFF2Q9UIK5 374 aaPredicted RBP6.73□□□□□ -1.33
VPS39-202ENST00000348544 EIF3LQ9Y262 564 aaKnown RBP6.73□□□□□ -1.33
VPS39-202ENST00000348544 UGT2A1Q9Y4X1 527 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 CCDC154A6NI56 674 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 AP3B1O00203 1094 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 CCL22O00626 93 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 WNT10BO00744 389 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 TNPO2O14787 897 aaKnown RBP6.73□□□□□ -1.33
VPS39-202ENST00000348544 RAD51BO15315 384 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 CYBBP04839 570 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 CCDC159P0C7I6 412 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 MTHFD2P13995 350 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 ITGB6P18564 788 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 PSMB9P28065 219 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 CLCN5P51795 746 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 HMGCS2P54868 508 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 RAPSNQ13702 412 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 OR4D1Q15615 310 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 FAM187BQ17R55 369 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 FBXO48Q5FWF7 155 aa6.73□□□□□ -1.33
VPS39-202ENST00000348544 SYT6Q5T7P8 510 aaPredicted RBP6.73□□□□□ -1.33
VPS39-202ENST00000348544 RSBN1Q5VWQ0 802 aaPredicted RBP6.73□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms