RNA–Protein interactions for RNA: ENST00000640748.1

ERGIC3-220, Transcript of ERGIC and golgi 3, humanhuman

TSL 5 BASIC

Gene ERGIC3, Length 832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ERGIC3-220ENST00000640748 NSD2O96028 1365 aa16.26■□□□□ 0.19
ERGIC3-220ENST00000640748 COG3Q96JB2 828 aa16.26■□□□□ 0.19
ERGIC3-220ENST00000640748 MAP3K5Q99683 1374 aa16.26■□□□□ 0.19
ERGIC3-220ENST00000640748 MEGF6O75095 1541 aa16.25■□□□□ 0.19
ERGIC3-220ENST00000640748 KCNQ4P56696 695 aa16.25■□□□□ 0.19
ERGIC3-220ENST00000640748 ARXQ96QS3 562 aa16.25■□□□□ 0.19
ERGIC3-220ENST00000640748 SHANK3Q9BYB0 1731 aa16.25■□□□□ 0.19
ERGIC3-220ENST00000640748 ANKRD36BQ8N2N9 1353 aa16.25■□□□□ 0.19
ERGIC3-220ENST00000640748 PRIM1P49642 420 aaKnown RBP16.24■□□□□ 0.19
ERGIC3-220ENST00000640748 SLC27A3Q5K4L6 730 aa16.24■□□□□ 0.19
ERGIC3-220ENST00000640748 PNPLA7Q6ZV29 1317 aa16.23■□□□□ 0.19
ERGIC3-220ENST00000640748 ZNF784Q8NCA9 323 aaPredicted RBP16.23■□□□□ 0.19
ERGIC3-220ENST00000640748 POLR3GLQ9BT43 218 aa16.23■□□□□ 0.19
ERGIC3-220ENST00000640748 RGPD2P0DJD1 1756 aa16.23■□□□□ 0.19
ERGIC3-220ENST00000640748 KAT6BQ8WYB5 2073 aa16.22■□□□□ 0.19
ERGIC3-220ENST00000640748 FYB1O15117 783 aa16.22■□□□□ 0.19
ERGIC3-220ENST00000640748 AMPHP49418 695 aa16.22■□□□□ 0.19
ERGIC3-220ENST00000640748 RRS1Q15050 365 aaKnown RBP16.22■□□□□ 0.19
ERGIC3-220ENST00000640748 NBPF6Q5VWK0 638 aa16.22■□□□□ 0.19
ERGIC3-220ENST00000640748 NBPF4Q96M43 638 aa16.22■□□□□ 0.19
ERGIC3-220ENST00000640748 CCER2I3L3R5 266 aa16.21■□□□□ 0.19
ERGIC3-220ENST00000640748 ZCRB1Q8TBF4 217 aaKnown RBP16.21■□□□□ 0.19
ERGIC3-220ENST00000640748 COL24A1Q17RW2 1714 aa16.21■□□□□ 0.19
ERGIC3-220ENST00000640748 QSER1Q2KHR3 1735 aa16.21■□□□□ 0.19
ERGIC3-220ENST00000640748 DOT1LQ8TEK3 1739 aa16.21■□□□□ 0.19
ERGIC3-220ENST00000640748 RTL1A6NKG5 1358 aa16.21■□□□□ 0.19
ERGIC3-220ENST00000640748 TMF1P82094 1093 aa16.2■□□□□ 0.18
ERGIC3-220ENST00000640748 SYTL4Q96C24 671 aaPredicted RBP16.2■□□□□ 0.18
ERGIC3-220ENST00000640748 GGNBP2Q9H3C7 697 aa16.2■□□□□ 0.18
ERGIC3-220ENST00000640748 LY75O60449 1722 aa16.19■□□□□ 0.18
ERGIC3-220ENST00000640748 TUBGCP6Q96RT7 1819 aa16.19■□□□□ 0.18
ERGIC3-220ENST00000640748 SLC24A1O60721 1099 aa16.19■□□□□ 0.18
ERGIC3-220ENST00000640748 USHBP1Q8N6Y0 703 aa16.19■□□□□ 0.18
ERGIC3-220ENST00000640748 SLC16A10Q8TF71 515 aa16.19■□□□□ 0.18
ERGIC3-220ENST00000640748 GOLGB1Q14789 3259 aaKnown RBP16.17■□□□□ 0.18
ERGIC3-220ENST00000640748 CENPBP07199 599 aaPredicted RBP16.17■□□□□ 0.18
ERGIC3-220ENST00000640748 TFCP2L1Q9NZI6 479 aa16.17■□□□□ 0.18
ERGIC3-220ENST00000640748 HSP90AB2PQ58FF8 381 aa16.16■□□□□ 0.18
ERGIC3-220ENST00000640748 INSRP06213 1382 aa16.15■□□□□ 0.18
ERGIC3-220ENST00000640748 CDCA8Q53HL2 280 aa16.15■□□□□ 0.18
ERGIC3-220ENST00000640748 YTHDC1Q96MU7 727 aaKnown RBP16.15■□□□□ 0.18
ERGIC3-220ENST00000640748 CCNL1Q9UK58 526 aaPredicted RBP16.15■□□□□ 0.18
ERGIC3-220ENST00000640748 CGNL1Q0VF96 1302 aa16.15■□□□□ 0.18
ERGIC3-220ENST00000640748 NLGN2Q8NFZ4 835 aa16.14■□□□□ 0.17
ERGIC3-220ENST00000640748 CARD14Q9BXL6 1004 aa16.14■□□□□ 0.17
ERGIC3-220ENST00000640748 CHD4Q14839 1912 aa16.13■□□□□ 0.17
ERGIC3-220ENST00000640748 POLD1P28340 1107 aa16.13■□□□□ 0.17
ERGIC3-220ENST00000640748 COL23A1Q86Y22 540 aaPredicted RBP16.13■□□□□ 0.17
ERGIC3-220ENST00000640748 RAPGEF4Q8WZA2 1011 aa16.13■□□□□ 0.17
ERGIC3-220ENST00000640748 FLT4P35916 1363 aa16.13■□□□□ 0.17
ERGIC3-220ENST00000640748 SMG6Q86US8 1419 aaKnown RBP16.12■□□□□ 0.17
ERGIC3-220ENST00000640748 GPR162Q16538 588 aa16.12■□□□□ 0.17
ERGIC3-220ENST00000640748 KIF24Q5T7B8 1368 aa16.12■□□□□ 0.17
ERGIC3-220ENST00000640748 CYP27B1O15528 508 aa16.11■□□□□ 0.17
ERGIC3-220ENST00000640748 KLHL34Q8N239 644 aa16.11■□□□□ 0.17
ERGIC3-220ENST00000640748 PRKRIP1Q9H875 184 aaPredicted RBP16.11■□□□□ 0.17
ERGIC3-220ENST00000640748 KIF20BQ96Q89 1820 aa16.1■□□□□ 0.17
ERGIC3-220ENST00000640748 TATP17735 454 aaPredicted RBP16.1■□□□□ 0.17
ERGIC3-220ENST00000640748 EMILIN1Q9Y6C2 1016 aa16.1■□□□□ 0.17
ERGIC3-220ENST00000640748 PCDH11XQ9BZA7 1347 aa16.1■□□□□ 0.17
ERGIC3-220ENST00000640748 PCDH11YQ9BZA8 1340 aa16.1■□□□□ 0.17
ERGIC3-220ENST00000640748 NCAPD2Q15021 1401 aa16.1■□□□□ 0.17
ERGIC3-220ENST00000640748 TOGARAM1Q9Y4F4 1720 aa16.08■□□□□ 0.17
ERGIC3-220ENST00000640748 YBX3P16989 372 aaKnown RBP eCLIP16.08■□□□□ 0.164e-11■□□□□ 11.2
ERGIC3-220ENST00000640748 AMIGO3Q86WK7 504 aa16.08■□□□□ 0.16
ERGIC3-220ENST00000640748 PALLDQ8WX93 1383 aa16.08■□□□□ 0.16
ERGIC3-220ENST00000640748 NSD3Q9BZ95 1437 aa16.08■□□□□ 0.16
ERGIC3-220ENST00000640748 C5P01031 1676 aa16.08■□□□□ 0.16
ERGIC3-220ENST00000640748 MSL1Q68DK7 614 aa16.07■□□□□ 0.16
ERGIC3-220ENST00000640748 PKD1L3Q7Z443 1732 aa16.06■□□□□ 0.16
ERGIC3-220ENST00000640748 C1QTNF8P60827 252 aa16.06■□□□□ 0.16
ERGIC3-220ENST00000640748 MPRIPQ6WCQ1 1025 aa16.06■□□□□ 0.16
ERGIC3-220ENST00000640748 PELP1Q8IZL8 1130 aaKnown RBP16.06■□□□□ 0.16
ERGIC3-220ENST00000640748 MSH5O43196 834 aa16.05■□□□□ 0.16
ERGIC3-220ENST00000640748 NKX1-1Q15270 411 aaPredicted RBP16.05■□□□□ 0.16
ERGIC3-220ENST00000640748 TAF1LQ8IZX4 1826 aa16.05■□□□□ 0.16
ERGIC3-220ENST00000640748 ANKRD26Q9UPS8 1709 aa16.05■□□□□ 0.16
ERGIC3-220ENST00000640748 PIGBQ92521 554 aa16.04■□□□□ 0.16
ERGIC3-220ENST00000640748 SMIM5Q71RC9 77 aa16.03■□□□□ 0.16
ERGIC3-220ENST00000640748 ITGB4P16144 1822 aa16.03■□□□□ 0.16
ERGIC3-220ENST00000640748 C4BP0C0L5 1744 aa16.02■□□□□ 0.16
ERGIC3-220ENST00000640748 EYA1Q99502 592 aa16.02■□□□□ 0.16
ERGIC3-220ENST00000640748 PANK3Q9H999 370 aa16.02■□□□□ 0.16
ERGIC3-220ENST00000640748 PPM1GO15355 546 aaPredicted RBP16.01■□□□□ 0.15
ERGIC3-220ENST00000640748 RALBP1Q15311 655 aa16.01■□□□□ 0.15
ERGIC3-220ENST00000640748 FLAD1Q8NFF5 587 aa16.01■□□□□ 0.15
ERGIC3-220ENST00000640748 SMARCC1Q92922 1105 aaPredicted RBP16.01■□□□□ 0.15
ERGIC3-220ENST00000640748 POLKQ9UBT6 870 aa16.01■□□□□ 0.15
ERGIC3-220ENST00000640748 CD2APQ9Y5K6 639 aa16.01■□□□□ 0.15
ERGIC3-220ENST00000640748 MAP2P11137 1827 aaKnown RBP16.01■□□□□ 0.15
ERGIC3-220ENST00000640748 SENP3-EIF4A1A0A087X0R7 540 aa16■□□□□ 0.15
ERGIC3-220ENST00000640748 PER1O15534 1290 aaPredicted RBP16■□□□□ 0.15
ERGIC3-220ENST00000640748 GRIN3BO60391 1043 aa15.99■□□□□ 0.15
ERGIC3-220ENST00000640748 LINC00116Q8NCU8 138 aa15.99■□□□□ 0.15
ERGIC3-220ENST00000640748 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.99■□□□□ 0.15
ERGIC3-220ENST00000640748 SPG7Q9UQ90 795 aa15.99■□□□□ 0.15
ERGIC3-220ENST00000640748 UBR3Q6ZT12 1888 aa15.99■□□□□ 0.15
ERGIC3-220ENST00000640748 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP15.98■□□□□ 0.15
ERGIC3-220ENST00000640748 LOC102724428A0A0B4J2F2 783 aa15.98■□□□□ 0.15
ERGIC3-220ENST00000640748 SIK1P57059 783 aa15.98■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 97.8 ms