RNA–Protein interactions for RNA: ENST00000640653.1

VEGFA-232, Transcript of vascular endothelial growth factor A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VEGFA, Length 1,170 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-232ENST00000640653 TATP17735 454 aaPredicted RBP34.66■■■■□ 3.14
VEGFA-232ENST00000640653 ANKRD26Q9UPS8 1709 aa34.66■■■■□ 3.14
VEGFA-232ENST00000640653 WASHC2AQ641Q2 1341 aa34.64■■■■□ 3.14
VEGFA-232ENST00000640653 NSD2O96028 1365 aa34.63■■■■□ 3.13
VEGFA-232ENST00000640653 ANO8Q9HCE9 1232 aaPredicted RBP34.63■■■■□ 3.13
VEGFA-232ENST00000640653 POLKQ9UBT6 870 aa34.62■■■■□ 3.13
VEGFA-232ENST00000640653 BTAF1O14981 1849 aa34.61■■■■□ 3.13
VEGFA-232ENST00000640653 TNNT2P45379 298 aaPredicted RBP34.61■■■■□ 3.13
VEGFA-232ENST00000640653 SHANK3Q9BYB0 1731 aa34.61■■■■□ 3.13
VEGFA-232ENST00000640653 MAP2P11137 1827 aaKnown RBP34.6■■■■□ 3.13
VEGFA-232ENST00000640653 STK32BQ9NY57 414 aa34.59■■■■□ 3.13
VEGFA-232ENST00000640653 SYTL4Q96C24 671 aaPredicted RBP34.57■■■■□ 3.12
VEGFA-232ENST00000640653 KNSTRNQ9Y448 316 aa34.56■■■■□ 3.12
VEGFA-232ENST00000640653 KIF7Q2M1P5 1343 aa34.55■■■■□ 3.12
VEGFA-232ENST00000640653 PCDH11XQ9BZA7 1347 aa34.55■■■■□ 3.12
VEGFA-232ENST00000640653 PCDH11YQ9BZA8 1340 aa34.55■■■■□ 3.12
VEGFA-232ENST00000640653 PRIM1P49642 420 aaKnown RBP34.55■■■■□ 3.12
VEGFA-232ENST00000640653 NCAPD2Q15021 1401 aa34.55■■■■□ 3.12
VEGFA-232ENST00000640653 DOT1LQ8TEK3 1739 aa34.54■■■■□ 3.12
VEGFA-232ENST00000640653 KAT6BQ8WYB5 2073 aa34.54■■■■□ 3.12
VEGFA-232ENST00000640653 SLC15A2Q16348 729 aa34.53■■■■□ 3.12
VEGFA-232ENST00000640653 SPON1Q9HCB6 807 aa34.53■■■■□ 3.12
VEGFA-232ENST00000640653 MORC1Q86VD1 984 aa34.51■■■■□ 3.12
VEGFA-232ENST00000640653 EYA1Q99502 592 aa34.51■■■■□ 3.12
VEGFA-232ENST00000640653 SLC27A3Q5K4L6 730 aa34.48■■■■□ 3.11
VEGFA-232ENST00000640653 CASZ1Q86V15 1759 aa34.47■■■■□ 3.11
VEGFA-232ENST00000640653 EIF4A2Q14240 407 aaKnown RBP34.47■■■■□ 3.11
VEGFA-232ENST00000640653 PAPPAQ13219 1627 aa34.45■■■■□ 3.11
VEGFA-232ENST00000640653 LRRC4BQ9NT99 713 aa34.45■■■■□ 3.11
VEGFA-232ENST00000640653 SPG7Q9UQ90 795 aa34.45■■■■□ 3.11
VEGFA-232ENST00000640653 PKD1L3Q7Z443 1732 aa34.44■■■■□ 3.1
VEGFA-232ENST00000640653 CYP27B1O15528 508 aa34.44■■■■□ 3.1
VEGFA-232ENST00000640653 PPP1R1BQ9UD71 204 aaPredicted RBP34.43■■■■□ 3.1
VEGFA-232ENST00000640653 PDGFDQ9GZP0 370 aaPredicted RBP34.42■■■■□ 3.1
VEGFA-232ENST00000640653 AMER1Q5JTC6 1135 aaPredicted RBP34.41■■■■□ 3.1
VEGFA-232ENST00000640653 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP34.41■■■■□ 3.17e-31■□□□□ 9.1
VEGFA-232ENST00000640653 ZBTB7AO95365 584 aa34.39■■■■□ 3.1
VEGFA-232ENST00000640653 PLEKHG2Q9H7P9 1386 aa34.37■■■■□ 3.09
VEGFA-232ENST00000640653 IGSF1Q8N6C5 1336 aa34.37■■■■□ 3.09
VEGFA-232ENST00000640653 ZNF827Q17R98 1081 aa34.37■■■■□ 3.09
VEGFA-232ENST00000640653 LY75O60449 1722 aa34.36■■■■□ 3.09
VEGFA-232ENST00000640653 NKX1-1Q15270 411 aaPredicted RBP34.35■■■■□ 3.09
VEGFA-232ENST00000640653 MPRIPQ6WCQ1 1025 aa34.34■■■■□ 3.09
VEGFA-232ENST00000640653 AKT1S1Q96B36 256 aa34.34■■■■□ 3.09
VEGFA-232ENST00000640653 CCNL1Q9UK58 526 aaPredicted RBP34.34■■■■□ 3.09
VEGFA-232ENST00000640653 MTFR1LQ9H019 292 aa34.33■■■■□ 3.09
VEGFA-232ENST00000640653 PER1O15534 1290 aaPredicted RBP34.32■■■■□ 3.08
VEGFA-232ENST00000640653 IFNL2Q8IZJ0 200 aa34.32■■■■□ 3.08
VEGFA-232ENST00000640653 ATF5Q9Y2D1 282 aaPredicted RBP34.32■■■■□ 3.08
VEGFA-232ENST00000640653 KCNQ4P56696 695 aa34.31■■■■□ 3.08
VEGFA-232ENST00000640653 TOGARAM1Q9Y4F4 1720 aa34.3■■■■□ 3.08
VEGFA-232ENST00000640653 PHKG2P15735 406 aa34.29■■■■□ 3.08
VEGFA-232ENST00000640653 HMGB2P26583 209 aaKnown RBP34.28■■■■□ 3.08
VEGFA-232ENST00000640653 TFCP2L1Q9NZI6 479 aa34.28■■■■□ 3.08
VEGFA-232ENST00000640653 PALLDQ8WX93 1383 aa34.27■■■■□ 3.08
VEGFA-232ENST00000640653 PTGER2P43116 358 aa34.27■■■■□ 3.08
VEGFA-232ENST00000640653 SMARCC1Q92922 1105 aaPredicted RBP34.27■■■■□ 3.08
VEGFA-232ENST00000640653 CC2D1BQ5T0F9 858 aaKnown RBP34.25■■■■□ 3.07
VEGFA-232ENST00000640653 ITGB4P16144 1822 aa34.25■■■■□ 3.07
VEGFA-232ENST00000640653 QSER1Q2KHR3 1735 aa34.24■■■■□ 3.07
VEGFA-232ENST00000640653 PLEKHO1Q53GL0 409 aaPredicted RBP34.24■■■■□ 3.07
VEGFA-232ENST00000640653 PIGBQ92521 554 aa34.24■■■■□ 3.07
VEGFA-232ENST00000640653 TMOD3Q9NYL9 352 aa34.23■■■■□ 3.07
VEGFA-232ENST00000640653 IL13P35225 146 aa34.22■■■■□ 3.07
VEGFA-232ENST00000640653 MTHFSP49914 203 aa34.22■■■■□ 3.07
VEGFA-232ENST00000640653 AMOTQ4VCS5 1084 aa34.22■■■■□ 3.07
VEGFA-232ENST00000640653 SLC16A10Q8TF71 515 aa34.22■■■■□ 3.07
VEGFA-232ENST00000640653 PNPLA7Q6ZV29 1317 aa34.22■■■■□ 3.07
VEGFA-232ENST00000640653 NPC1L1Q9UHC9 1359 aa34.22■■■■□ 3.07
VEGFA-232ENST00000640653 HSP90AB1P08238 724 aaKnown RBP34.2■■■■□ 3.07
VEGFA-232ENST00000640653 SULT6B1Q6IMI4 303 aa34.19■■■■□ 3.06
VEGFA-232ENST00000640653 AEBP1Q8IUX7 1158 aa34.19■■■■□ 3.06
VEGFA-232ENST00000640653 SGIP1Q9BQI5 828 aa34.19■■■■□ 3.06
VEGFA-232ENST00000640653 KDRP35968 1356 aa34.17■■■■□ 3.06
VEGFA-232ENST00000640653 ZNF530Q6P9A1 599 aaPredicted RBP34.17■■■■□ 3.06
VEGFA-232ENST00000640653 C5P01031 1676 aa34.16■■■■□ 3.06
VEGFA-232ENST00000640653 DCAF5Q96JK2 942 aa34.15■■■■□ 3.06
VEGFA-232ENST00000640653 TUBGCP6Q96RT7 1819 aa34.15■■■■□ 3.06
VEGFA-232ENST00000640653 DCAF8L1A6NGE4 600 aa34.13■■■■□ 3.05
VEGFA-232ENST00000640653 ERVV-2B6SEH9 535 aa34.13■■■■□ 3.05
VEGFA-232ENST00000640653 CNGB1Q14028 1251 aaPredicted RBP34.12■■■■□ 3.05
VEGFA-232ENST00000640653 C1orf141Q5JVX7 400 aa34.12■■■■□ 3.05
VEGFA-232ENST00000640653 ARXQ96QS3 562 aa34.12■■■■□ 3.05
VEGFA-232ENST00000640653 ASAP1Q9ULH1 1129 aa34.11■■■■□ 3.05
VEGFA-232ENST00000640653 LOC102724428A0A0B4J2F2 783 aa34.1■■■■□ 3.05
VEGFA-232ENST00000640653 MSH5O43196 834 aa34.1■■■■□ 3.05
VEGFA-232ENST00000640653 POLD1P28340 1107 aa34.1■■■■□ 3.05
VEGFA-232ENST00000640653 SIK1P57059 783 aa34.1■■■■□ 3.05
VEGFA-232ENST00000640653 DIAPH1O60610 1272 aaKnown RBP34.09■■■■□ 3.05
VEGFA-232ENST00000640653 FHDC1Q9C0D6 1143 aaPredicted RBP34.09■■■■□ 3.05
VEGFA-232ENST00000640653 TAF1LQ8IZX4 1826 aa34.09■■■■□ 3.05
VEGFA-232ENST00000640653 FLAD1Q8NFF5 587 aa34.08■■■■□ 3.05
VEGFA-232ENST00000640653 COL23A1Q86Y22 540 aaPredicted RBP34.07■■■■□ 3.04
VEGFA-232ENST00000640653 AK7Q96M32 723 aa34.07■■■■□ 3.04
VEGFA-232ENST00000640653 ATG3Q9NT62 314 aa34.07■■■■□ 3.04
VEGFA-232ENST00000640653 KDM6AO15550 1401 aaPredicted RBP34.06■■■■□ 3.04
VEGFA-232ENST00000640653 C4BP0C0L5 1744 aa34.06■■■■□ 3.04
VEGFA-232ENST00000640653 SYT17Q9BSW7 474 aa34.05■■■■□ 3.04
VEGFA-232ENST00000640653 CABP4P57796 275 aa34.04■■■■□ 3.04
VEGFA-232ENST00000640653 HMOX1P09601 288 aa34.03■■■■□ 3.04
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms