RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 TPD52L1Q16890 204 aaPredicted RBP6.05□□□□□ -1.44
SCN1A-218ENST00000640036 ERC1Q8IUD2 1116 aa6.05□□□□□ -1.44
SCN1A-218ENST00000640036 DNAJC2Q99543 621 aaKnown RBP6.05□□□□□ -1.44
SCN1A-218ENST00000640036 VEZTQ9HBM0 779 aa6.05□□□□□ -1.44
SCN1A-218ENST00000640036 NOD1Q9Y239 953 aa6.05□□□□□ -1.44
SCN1A-218ENST00000640036 SETD1BQ9UPS6 1966 aaKnown RBP6.05□□□□□ -1.44
SCN1A-218ENST00000640036 DHX29Q7Z478 1369 aaKnown RBP6.05□□□□□ -1.44
SCN1A-218ENST00000640036 CCDC7Q96M83 1385 aa6.05□□□□□ -1.44
SCN1A-218ENST00000640036 PLCB2Q00722 1185 aa6.05□□□□□ -1.44
SCN1A-218ENST00000640036 ZNF76P36508 570 aa6.05□□□□□ -1.44
SCN1A-218ENST00000640036 ODF2Q5BJF6 829 aa6.05□□□□□ -1.44
SCN1A-218ENST00000640036 METTL24Q5JXM2 366 aa6.05□□□□□ -1.44
SCN1A-218ENST00000640036 SPTY2D1Q68D10 685 aaPredicted RBP6.05□□□□□ -1.44
SCN1A-218ENST00000640036 SULF1Q8IWU6 871 aa6.04□□□□□ -1.44
SCN1A-218ENST00000640036 ATF5Q9Y2D1 282 aaPredicted RBP6.04□□□□□ -1.44
SCN1A-218ENST00000640036 EHBP1L1Q8N3D4 1523 aa6.04□□□□□ -1.44
SCN1A-218ENST00000640036 BAG3O95817 575 aa6.04□□□□□ -1.44
SCN1A-218ENST00000640036 PDE4CQ08493 712 aa6.04□□□□□ -1.44
SCN1A-218ENST00000640036 H3BQV1 296 aa6.04□□□□□ -1.44
SCN1A-218ENST00000640036 HMGB3O15347 200 aaKnown RBP6.04□□□□□ -1.44
SCN1A-218ENST00000640036 IFFO2Q5TF58 517 aa6.04□□□□□ -1.44
SCN1A-218ENST00000640036 EP400NLQ6ZTU2 488 aa6.04□□□□□ -1.44
SCN1A-218ENST00000640036 GNAI3P08754 354 aa6.04□□□□□ -1.44
SCN1A-218ENST00000640036 DCPSQ96C86 337 aaKnown RBP6.04□□□□□ -1.44
SCN1A-218ENST00000640036 ALDH1B1P30837 517 aa6.04□□□□□ -1.44
SCN1A-218ENST00000640036 IFIT5Q13325 482 aaKnown RBP6.04□□□□□ -1.44
SCN1A-218ENST00000640036 PICK1Q9NRD5 415 aa6.04□□□□□ -1.44
SCN1A-218ENST00000640036 KDM2BQ8NHM5 1336 aa6.04□□□□□ -1.44
SCN1A-218ENST00000640036 PES1O00541 588 aaKnown RBP6.04□□□□□ -1.44
SCN1A-218ENST00000640036 A0A0U1RQG5 324 aaPredicted RBP6.04□□□□□ -1.44
SCN1A-218ENST00000640036 ABCC2Q92887 1545 aa6.04□□□□□ -1.44
SCN1A-218ENST00000640036 CCDC152Q4G0S7 254 aa6.03□□□□□ -1.44
SCN1A-218ENST00000640036 RRP12Q5JTH9 1297 aaKnown RBP6.03□□□□□ -1.44
SCN1A-218ENST00000640036 B4GALNT3Q6L9W6 998 aa6.03□□□□□ -1.44
SCN1A-218ENST00000640036 CNBD1Q8NA66 436 aa6.03□□□□□ -1.44
SCN1A-218ENST00000640036 FGD6Q6ZV73 1430 aa6.03□□□□□ -1.44
SCN1A-218ENST00000640036 RRS1Q15050 365 aaKnown RBP6.03□□□□□ -1.44
SCN1A-218ENST00000640036 RBM17Q96I25 401 aaKnown RBP6.03□□□□□ -1.44
SCN1A-218ENST00000640036 GPHNQ9NQX3 736 aaPredicted RBP6.03□□□□□ -1.44
SCN1A-218ENST00000640036 SLC5A4Q9NY91 659 aa6.03□□□□□ -1.44
SCN1A-218ENST00000640036 LARP1Q6PKG0 1096 aaKnown RBP6.03□□□□□ -1.44
SCN1A-218ENST00000640036 RUNDC1Q96C34 613 aa6.03□□□□□ -1.44
SCN1A-218ENST00000640036 EHMT1Q9H9B1 1298 aa6.03□□□□□ -1.44
SCN1A-218ENST00000640036 MKNK2Q9HBH9 465 aa6.03□□□□□ -1.44
SCN1A-218ENST00000640036 ZBTB24O43167 697 aaPredicted RBP6.03□□□□□ -1.44
SCN1A-218ENST00000640036 GLRX3O76003 335 aaKnown RBP6.03□□□□□ -1.44
SCN1A-218ENST00000640036 GPTP24298 496 aa6.03□□□□□ -1.44
SCN1A-218ENST00000640036 TSR1Q2NL82 804 aaKnown RBP6.03□□□□□ -1.44
SCN1A-218ENST00000640036 ZGPATQ8N5A5 531 aaKnown RBP6.03□□□□□ -1.44
SCN1A-218ENST00000640036 CLUAP1Q96AJ1 413 aa6.03□□□□□ -1.44
SCN1A-218ENST00000640036 AKAP2Q9Y2D5 859 aa6.03□□□□□ -1.44
SCN1A-218ENST00000640036 RIMS2Q9UQ26 1411 aa6.03□□□□□ -1.44
SCN1A-218ENST00000640036 ECM2O94769 699 aaPredicted RBP6.03□□□□□ -1.44
SCN1A-218ENST00000640036 PLCD3Q8N3E9 789 aa6.03□□□□□ -1.44
SCN1A-218ENST00000640036 NFE2L2Q16236 605 aa6.03□□□□□ -1.44
SCN1A-218ENST00000640036 CSADQ9Y600 493 aa6.03□□□□□ -1.44
SCN1A-218ENST00000640036 SLC5A1P13866 664 aa6.02□□□□□ -1.45
SCN1A-218ENST00000640036 NIP7Q9Y221 180 aaKnown RBP eCLIP6.02□□□□□ -1.45
SCN1A-218ENST00000640036 CFAP74Q9C0B2 1584 aa6.02□□□□□ -1.45
SCN1A-218ENST00000640036 TTC21AQ8NDW8 1320 aa6.02□□□□□ -1.45
SCN1A-218ENST00000640036 ANKRD18BA2A2Z9 1011 aa6.02□□□□□ -1.45
SCN1A-218ENST00000640036 PRKAR2BP31323 418 aa6.02□□□□□ -1.45
SCN1A-218ENST00000640036 NLGN1Q8N2Q7 840 aa6.02□□□□□ -1.45
SCN1A-218ENST00000640036 TRAF1Q13077 416 aa6.02□□□□□ -1.45
SCN1A-218ENST00000640036 PPP4R3BQ5MIZ7 849 aa6.02□□□□□ -1.45
SCN1A-218ENST00000640036 HSCBQ8IWL3 235 aa6.02□□□□□ -1.45
SCN1A-218ENST00000640036 SLC12A5Q9H2X9 1139 aa6.02□□□□□ -1.45
SCN1A-218ENST00000640036 KDM5BQ9UGL1 1544 aa6.02□□□□□ -1.45
SCN1A-218ENST00000640036 AFF2P51816 1311 aa6.02□□□□□ -1.45
SCN1A-218ENST00000640036 CSPP1Q1MSJ5 1256 aa6.02□□□□□ -1.45
SCN1A-218ENST00000640036 CDK5RAP3Q96JB5 506 aa6.02□□□□□ -1.45
SCN1A-218ENST00000640036 ANKRD18AQ8IVF6 992 aa6.02□□□□□ -1.45
SCN1A-218ENST00000640036 CNKSR1Q969H4 720 aa6.02□□□□□ -1.45
SCN1A-218ENST00000640036 TMEM106CQ9BVX2 250 aa6.02□□□□□ -1.45
SCN1A-218ENST00000640036 TRAPPC8Q9Y2L5 1435 aa6.02□□□□□ -1.45
SCN1A-218ENST00000640036 PPP1R12BO60237 982 aaPredicted RBP6.01□□□□□ -1.45
SCN1A-218ENST00000640036 MATR3P43243 847 aaKnown RBP eCLIP6.01□□□□□ -1.451e-10■■■■■ 37.8
SCN1A-218ENST00000640036 CCDC85AQ96PX6 553 aaPredicted RBP6.01□□□□□ -1.45
SCN1A-218ENST00000640036 NSFL1CQ9UNZ2 370 aaKnown RBP6.01□□□□□ -1.45
SCN1A-218ENST00000640036 TDO2P48775 406 aa6.01□□□□□ -1.45
SCN1A-218ENST00000640036 CCDC125Q86Z20 511 aa6.01□□□□□ -1.45
SCN1A-218ENST00000640036 ZNF444Q8N0Y2 327 aaPredicted RBP6.01□□□□□ -1.45
SCN1A-218ENST00000640036 SMCR8Q8TEV9 937 aaPredicted RBP6.01□□□□□ -1.45
SCN1A-218ENST00000640036 CUL5Q93034 780 aa6.01□□□□□ -1.45
SCN1A-218ENST00000640036 SIRT1Q96EB6 747 aa6.01□□□□□ -1.45
SCN1A-218ENST00000640036 YY1P25490 414 aa6.01□□□□□ -1.45
SCN1A-218ENST00000640036 CT47A1Q5JQC4 288 aaPredicted RBP6.01□□□□□ -1.45
SCN1A-218ENST00000640036 LRSAM1Q6UWE0 723 aa6.01□□□□□ -1.45
SCN1A-218ENST00000640036 SEPT12Q8IYM1 358 aa6.01□□□□□ -1.45
SCN1A-218ENST00000640036 XPO5Q9HAV4 1204 aaKnown RBP eCLIP6.01□□□□□ -1.45
SCN1A-218ENST00000640036 TMOD4Q9NZQ9 345 aa6.01□□□□□ -1.45
SCN1A-218ENST00000640036 CAPN15O75808 1086 aa6.01□□□□□ -1.45
SCN1A-218ENST00000640036 GSTO1P78417 241 aa6.01□□□□□ -1.45
SCN1A-218ENST00000640036 PLCH2O75038 1416 aa6.01□□□□□ -1.45
SCN1A-218ENST00000640036 DESP17661 470 aa6.01□□□□□ -1.45
SCN1A-218ENST00000640036 ZKSCAN2Q63HK3 967 aa6.01□□□□□ -1.45
SCN1A-218ENST00000640036 NBPF3Q9H094 633 aa6.01□□□□□ -1.45
SCN1A-218ENST00000640036 HMGB1P09429 215 aaKnown RBP6.01□□□□□ -1.45
SCN1A-218ENST00000640036 TNNT3P45378 269 aaPredicted RBP6.01□□□□□ -1.45
SCN1A-218ENST00000640036 PLS1Q14651 629 aa6.01□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms