RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 SENP3-EIF4A1A0A087X0R7 540 aa9.75□□□□□ -0.85
CD44-239ENST00000639002 ATP5J2-PTCD1G3V325 749 aa9.75□□□□□ -0.85
CD44-239ENST00000639002 TRAK2O60296 914 aa9.75□□□□□ -0.85
CD44-239ENST00000639002 INSM1Q01101 510 aaPredicted RBP9.75□□□□□ -0.85
CD44-239ENST00000639002 VAC14Q08AM6 782 aa9.75□□□□□ -0.85
CD44-239ENST00000639002 CCDC155Q8N6L0 562 aa9.75□□□□□ -0.85
CD44-239ENST00000639002 ZNF592Q92610 1267 aa9.74□□□□□ -0.85
CD44-239ENST00000639002 A0A1W2PRU2 124 aa9.73□□□□□ -0.85
CD44-239ENST00000639002 ABL2P42684 1182 aa9.73□□□□□ -0.85
CD44-239ENST00000639002 RNF144AP50876 292 aaPredicted RBP9.73□□□□□ -0.85
CD44-239ENST00000639002 PRM3Q9NNZ6 103 aa9.73□□□□□ -0.85
CD44-239ENST00000639002 COG6Q9Y2V7 657 aa9.72□□□□□ -0.85
CD44-239ENST00000639002 EIF4G2P78344 907 aaKnown RBP eCLIP9.71□□□□□ -0.86
CD44-239ENST00000639002 KRT76Q01546 638 aa9.7□□□□□ -0.86
CD44-239ENST00000639002 LYSMD3Q7Z3D4 306 aa9.7□□□□□ -0.86
CD44-239ENST00000639002 PRICKLE2Q7Z3G6 844 aa9.7□□□□□ -0.86
CD44-239ENST00000639002 NANOS1Q8WY41 292 aaKnown RBP9.7□□□□□ -0.86
CD44-239ENST00000639002 TRIM52Q96A61 297 aa9.7□□□□□ -0.86
CD44-239ENST00000639002 CHIC2Q9UKJ5 165 aa9.7□□□□□ -0.86
CD44-239ENST00000639002 MEN1O00255 615 aa9.69□□□□□ -0.86
CD44-239ENST00000639002 ITGA6P23229 1130 aa9.69□□□□□ -0.86
CD44-239ENST00000639002 POM121Q96HA1 1249 aa9.69□□□□□ -0.86
CD44-239ENST00000639002 STK17AQ9UEE5 414 aa9.69□□□□□ -0.86
CD44-239ENST00000639002 RHOQP17081 205 aa9.68□□□□□ -0.86
CD44-239ENST00000639002 CYP2U1Q7Z449 544 aa9.68□□□□□ -0.86
CD44-239ENST00000639002 GRIP2Q9C0E4 1043 aa9.68□□□□□ -0.86
CD44-239ENST00000639002 GPC1P35052 558 aa9.67□□□□□ -0.86
CD44-239ENST00000639002 CLN3Q13286 438 aa9.67□□□□□ -0.86
CD44-239ENST00000639002 WASHC4Q2M389 1173 aa9.67□□□□□ -0.86
CD44-239ENST00000639002 ZSCAN1Q8NBB4 408 aa9.67□□□□□ -0.86
CD44-239ENST00000639002 ARHGEF10LQ9HCE6 1279 aa9.67□□□□□ -0.86
CD44-239ENST00000639002 CUEDC1Q9NWM3 386 aaPredicted RBP9.67□□□□□ -0.86
CD44-239ENST00000639002 VWA5B2Q8N398 1253 aa9.66□□□□□ -0.86
CD44-239ENST00000639002 RAB6BQ9NRW1 208 aa9.66□□□□□ -0.86
CD44-239ENST00000639002 IL2RAP01589 272 aa9.65□□□□□ -0.86
CD44-239ENST00000639002 HRH3Q9Y5N1 445 aa9.65□□□□□ -0.86
CD44-239ENST00000639002 STAU1O95793 577 aaKnown RBP9.64□□□□□ -0.87
CD44-239ENST00000639002 GNRH1P01148 92 aa9.64□□□□□ -0.87
CD44-239ENST00000639002 POU4F2Q12837 409 aa9.64□□□□□ -0.87
CD44-239ENST00000639002 SLFNL1Q499Z3 407 aa9.64□□□□□ -0.87
CD44-239ENST00000639002 RNFT1Q5M7Z0 435 aa9.64□□□□□ -0.87
CD44-239ENST00000639002 RNF135Q8IUD6 432 aa9.64□□□□□ -0.87
CD44-239ENST00000639002 XAGE2Q96GT9 111 aa9.63□□□□□ -0.87
CD44-239ENST00000639002 NLRP3Q96P20 1036 aa9.63□□□□□ -0.87
CD44-239ENST00000639002 COL25A1Q9BXS0 654 aaPredicted RBP9.63□□□□□ -0.87
CD44-239ENST00000639002 DOLKQ9UPQ8 538 aa9.63□□□□□ -0.87
CD44-239ENST00000639002 CNKSR1Q969H4 720 aa9.62□□□□□ -0.87
CD44-239ENST00000639002 CNTNAP3BQ96NU0 1288 aa9.62□□□□□ -0.87
CD44-239ENST00000639002 ESYT1Q9BSJ8 1104 aa9.62□□□□□ -0.87
CD44-239ENST00000639002 CNTNAP3Q9BZ76 1288 aa9.62□□□□□ -0.87
CD44-239ENST00000639002 CDC14CA4D256 554 aa9.61□□□□□ -0.87
CD44-239ENST00000639002 SPATA31C2B4DYI2 1134 aa9.61□□□□□ -0.87
CD44-239ENST00000639002 MYCP01106 439 aaPredicted RBP9.61□□□□□ -0.87
CD44-239ENST00000639002 CENPCQ03188 943 aa9.61□□□□□ -0.87
CD44-239ENST00000639002 SLC27A3Q5K4L6 730 aa9.61□□□□□ -0.87
CD44-239ENST00000639002 SV2AQ7L0J3 742 aa9.61□□□□□ -0.87
CD44-239ENST00000639002 ESF1Q9H501 851 aaKnown RBP9.61□□□□□ -0.87
CD44-239ENST00000639002 ALG2Q9H553 416 aa9.61□□□□□ -0.87
CD44-239ENST00000639002 PIK3CDO00329 1044 aa9.6□□□□□ -0.87
CD44-239ENST00000639002 USP4Q13107 963 aa9.6□□□□□ -0.87
CD44-239ENST00000639002 SEMA3FQ13275 785 aa9.6□□□□□ -0.87
CD44-239ENST00000639002 TMEM132AQ24JP5 1023 aa9.6□□□□□ -0.87
CD44-239ENST00000639002 OXLD1Q5BKU9 147 aa9.6□□□□□ -0.87
CD44-239ENST00000639002 NBPF10Q6P3W6 841 aaKnown RBP9.6□□□□□ -0.87
CD44-239ENST00000639002 NBPF15Q8N660 670 aa9.6□□□□□ -0.87
CD44-239ENST00000639002 FHDC1Q9C0D6 1143 aaPredicted RBP9.6□□□□□ -0.87
CD44-239ENST00000639002 SOX11P35716 441 aa9.59□□□□□ -0.87
CD44-239ENST00000639002 PLPP7Q8NBV4 271 aa9.59□□□□□ -0.87
CD44-239ENST00000639002 ETNK1Q9HBU6 452 aa9.59□□□□□ -0.87
CD44-239ENST00000639002 FLIIQ13045 1269 aa9.58□□□□□ -0.88
CD44-239ENST00000639002 DBN1Q16643 649 aa9.58□□□□□ -0.88
CD44-239ENST00000639002 DYRK1BQ9Y463 629 aa9.58□□□□□ -0.88
CD44-239ENST00000639002 MAP7D1Q3KQU3 841 aa9.57□□□□□ -0.88
CD44-239ENST00000639002 ADAMTS19Q8TE59 1207 aa9.57□□□□□ -0.88
CD44-239ENST00000639002 POM121CA8CG34 1229 aa9.56□□□□□ -0.88
CD44-239ENST00000639002 SCNN1DP51172 638 aa9.56□□□□□ -0.88
CD44-239ENST00000639002 GAS6Q14393 721 aa9.56□□□□□ -0.88
CD44-239ENST00000639002 WDR44Q5JSH3 913 aa9.56□□□□□ -0.88
CD44-239ENST00000639002 ZNF837Q96EG3 531 aaPredicted RBP9.56□□□□□ -0.88
CD44-239ENST00000639002 WASLO00401 505 aaPredicted RBP9.55□□□□□ -0.88
CD44-239ENST00000639002 TAS1R3Q7RTX0 852 aa9.55□□□□□ -0.88
CD44-239ENST00000639002 TRIM22Q8IYM9 498 aa9.55□□□□□ -0.88
CD44-239ENST00000639002 THBS1P07996 1170 aa9.54□□□□□ -0.88
CD44-239ENST00000639002 UBTFP17480 764 aaKnown RBP9.54□□□□□ -0.88
CD44-239ENST00000639002 ZSCAN10Q96SZ4 725 aaPredicted RBP9.54□□□□□ -0.88
CD44-239ENST00000639002 GAS2L1Q99501 681 aaPredicted RBP9.54□□□□□ -0.88
CD44-239ENST00000639002 TIMMDC1Q9NPL8 285 aa9.54□□□□□ -0.88
CD44-239ENST00000639002 SLURP2P0DP57 97 aa9.53□□□□□ -0.88
CD44-239ENST00000639002 RIPOR1Q6ZS17 1223 aa9.53□□□□□ -0.88
CD44-239ENST00000639002 WHAMMQ8TF30 809 aa9.53□□□□□ -0.88
CD44-239ENST00000639002 SIRT1Q96EB6 747 aa9.53□□□□□ -0.88
CD44-239ENST00000639002 PCDHGA11Q9Y5H2 935 aa9.53□□□□□ -0.88
CD44-239ENST00000639002 FAM181BA6NEQ2 426 aa9.52□□□□□ -0.89
CD44-239ENST00000639002 RAD21O60216 631 aa9.52□□□□□ -0.89
CD44-239ENST00000639002 INHAP05111 366 aa9.52□□□□□ -0.89
CD44-239ENST00000639002 PHKA2P46019 1235 aa9.52□□□□□ -0.89
CD44-239ENST00000639002 C4orf17Q53FE4 359 aa9.52□□□□□ -0.89
CD44-239ENST00000639002 ESCO1Q5FWF5 840 aa9.52□□□□□ -0.89
CD44-239ENST00000639002 GMCL1Q96IK5 515 aa9.52□□□□□ -0.89
CD44-239ENST00000639002 TMEM229AB2RXF0 380 aa9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 543.5 ms