RNA–Protein interactions for RNA: ENST00000620514.1

HMGN3-203, Transcript of high mobility group nucleosomal binding domain 3, humanhuman

TSL 3 BASIC

Gene HMGN3, Length 1,010 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN3-203ENST00000620514 PPM1GO15355 546 aaPredicted RBP23.69■■□□□ 1.38
HMGN3-203ENST00000620514 BTAF1O14981 1849 aa23.68■■□□□ 1.38
HMGN3-203ENST00000620514 KAT6BQ8WYB5 2073 aa23.68■■□□□ 1.38
HMGN3-203ENST00000620514 TNNT2P45379 298 aaPredicted RBP23.66■■□□□ 1.38
HMGN3-203ENST00000620514 RAPGEF4Q8WZA2 1011 aa23.66■■□□□ 1.38
HMGN3-203ENST00000620514 POLKQ9UBT6 870 aa23.66■■□□□ 1.38
HMGN3-203ENST00000620514 ANKRD26Q9UPS8 1709 aa23.66■■□□□ 1.38
HMGN3-203ENST00000620514 MAP2P11137 1827 aaKnown RBP23.65■■□□□ 1.38
HMGN3-203ENST00000620514 TATP17735 454 aaPredicted RBP23.64■■□□□ 1.37
HMGN3-203ENST00000620514 PDGFDQ9GZP0 370 aaPredicted RBP23.64■■□□□ 1.37
HMGN3-203ENST00000620514 WASHC2AQ641Q2 1341 aa23.63■■□□□ 1.37
HMGN3-203ENST00000620514 PRIM1P49642 420 aaKnown RBP23.63■■□□□ 1.37
HMGN3-203ENST00000620514 DOT1LQ8TEK3 1739 aa23.63■■□□□ 1.37
HMGN3-203ENST00000620514 SYTL4Q96C24 671 aaPredicted RBP23.63■■□□□ 1.37
HMGN3-203ENST00000620514 STK32BQ9NY57 414 aa23.62■■□□□ 1.37
HMGN3-203ENST00000620514 CASZ1Q86V15 1759 aa23.6■■□□□ 1.37
HMGN3-203ENST00000620514 SLC15A2Q16348 729 aa23.6■■□□□ 1.37
HMGN3-203ENST00000620514 NSD2O96028 1365 aa23.6■■□□□ 1.37
HMGN3-203ENST00000620514 EYA1Q99502 592 aa23.59■■□□□ 1.37
HMGN3-203ENST00000620514 SPON1Q9HCB6 807 aa23.59■■□□□ 1.37
HMGN3-203ENST00000620514 LRRC4BQ9NT99 713 aa23.59■■□□□ 1.37
HMGN3-203ENST00000620514 NCAPD2Q15021 1401 aa23.59■■□□□ 1.37
HMGN3-203ENST00000620514 KIF7Q2M1P5 1343 aa23.59■■□□□ 1.37
HMGN3-203ENST00000620514 PAPPAQ13219 1627 aa23.58■■□□□ 1.36
HMGN3-203ENST00000620514 PCDH11XQ9BZA7 1347 aa23.57■■□□□ 1.36
HMGN3-203ENST00000620514 PCDH11YQ9BZA8 1340 aa23.57■■□□□ 1.36
HMGN3-203ENST00000620514 EIF4A2Q14240 407 aaKnown RBP23.56■■□□□ 1.36
HMGN3-203ENST00000620514 CYP27B1O15528 508 aa23.55■■□□□ 1.36
HMGN3-203ENST00000620514 ZBTB7AO95365 584 aa23.55■■□□□ 1.36
HMGN3-203ENST00000620514 ZNF827Q17R98 1081 aa23.55■■□□□ 1.36
HMGN3-203ENST00000620514 KCNQ4P56696 695 aa23.54■■□□□ 1.36
HMGN3-203ENST00000620514 MORC1Q86VD1 984 aa23.54■■□□□ 1.36
HMGN3-203ENST00000620514 PKD1L3Q7Z443 1732 aa23.53■■□□□ 1.36
HMGN3-203ENST00000620514 KNSTRNQ9Y448 316 aa23.53■■□□□ 1.36
HMGN3-203ENST00000620514 SLC27A3Q5K4L6 730 aa23.52■■□□□ 1.36
HMGN3-203ENST00000620514 PPP1R1BQ9UD71 204 aaPredicted RBP23.52■■□□□ 1.36
HMGN3-203ENST00000620514 ATF5Q9Y2D1 282 aaPredicted RBP23.51■■□□□ 1.35
HMGN3-203ENST00000620514 LY75O60449 1722 aa23.5■■□□□ 1.35
HMGN3-203ENST00000620514 AMER1Q5JTC6 1135 aaPredicted RBP23.49■■□□□ 1.35
HMGN3-203ENST00000620514 AKT1S1Q96B36 256 aa23.49■■□□□ 1.35
HMGN3-203ENST00000620514 TOGARAM1Q9Y4F4 1720 aa23.48■■□□□ 1.35
HMGN3-203ENST00000620514 SPG7Q9UQ90 795 aa23.48■■□□□ 1.35
HMGN3-203ENST00000620514 PTGER2P43116 358 aa23.47■■□□□ 1.35
HMGN3-203ENST00000620514 IGSF1Q8N6C5 1336 aa23.47■■□□□ 1.35
HMGN3-203ENST00000620514 MPRIPQ6WCQ1 1025 aa23.46■■□□□ 1.35
HMGN3-203ENST00000620514 CCNL1Q9UK58 526 aaPredicted RBP23.46■■□□□ 1.35
HMGN3-203ENST00000620514 NKX1-1Q15270 411 aaPredicted RBP23.45■■□□□ 1.34
HMGN3-203ENST00000620514 MTFR1LQ9H019 292 aa23.45■■□□□ 1.34
HMGN3-203ENST00000620514 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP23.45■■□□□ 1.345e-8■□□□□ 10.4
HMGN3-203ENST00000620514 PER1O15534 1290 aaPredicted RBP23.43■■□□□ 1.34
HMGN3-203ENST00000620514 ITGB4P16144 1822 aa23.43■■□□□ 1.34
HMGN3-203ENST00000620514 PHKG2P15735 406 aa23.42■■□□□ 1.34
HMGN3-203ENST00000620514 SGIP1Q9BQI5 828 aa23.42■■□□□ 1.34
HMGN3-203ENST00000620514 PALLDQ8WX93 1383 aa23.41■■□□□ 1.34
HMGN3-203ENST00000620514 PNPLA7Q6ZV29 1317 aa23.41■■□□□ 1.34
HMGN3-203ENST00000620514 TUBGCP6Q96RT7 1819 aa23.41■■□□□ 1.34
HMGN3-203ENST00000620514 IFNL2Q8IZJ0 200 aa23.41■■□□□ 1.34
HMGN3-203ENST00000620514 PIGBQ92521 554 aa23.41■■□□□ 1.34
HMGN3-203ENST00000620514 TFCP2L1Q9NZI6 479 aa23.41■■□□□ 1.34
HMGN3-203ENST00000620514 AEBP1Q8IUX7 1158 aa23.4■■□□□ 1.34
HMGN3-203ENST00000620514 QSER1Q2KHR3 1735 aa23.39■■□□□ 1.34
HMGN3-203ENST00000620514 CC2D1BQ5T0F9 858 aaKnown RBP23.39■■□□□ 1.33
HMGN3-203ENST00000620514 IL13P35225 146 aa23.37■■□□□ 1.33
HMGN3-203ENST00000620514 MTHFSP49914 203 aa23.36■■□□□ 1.33
HMGN3-203ENST00000620514 SMARCC1Q92922 1105 aaPredicted RBP23.36■■□□□ 1.33
HMGN3-203ENST00000620514 PLEKHG2Q9H7P9 1386 aa23.36■■□□□ 1.33
HMGN3-203ENST00000620514 CNGB1Q14028 1251 aaPredicted RBP23.35■■□□□ 1.33
HMGN3-203ENST00000620514 PLEKHO1Q53GL0 409 aaPredicted RBP23.35■■□□□ 1.33
HMGN3-203ENST00000620514 SULT6B1Q6IMI4 303 aa23.35■■□□□ 1.33
HMGN3-203ENST00000620514 TMOD3Q9NYL9 352 aa23.35■■□□□ 1.33
HMGN3-203ENST00000620514 C5P01031 1676 aa23.35■■□□□ 1.33
HMGN3-203ENST00000620514 SLC16A10Q8TF71 515 aa23.34■■□□□ 1.33
HMGN3-203ENST00000620514 FHDC1Q9C0D6 1143 aaPredicted RBP23.34■■□□□ 1.33
HMGN3-203ENST00000620514 ZNF530Q6P9A1 599 aaPredicted RBP23.33■■□□□ 1.33
HMGN3-203ENST00000620514 COL23A1Q86Y22 540 aaPredicted RBP23.33■■□□□ 1.33
HMGN3-203ENST00000620514 ARXQ96QS3 562 aa23.33■■□□□ 1.33
HMGN3-203ENST00000620514 ASAP1Q9ULH1 1129 aa23.33■■□□□ 1.33
HMGN3-203ENST00000620514 TAF1LQ8IZX4 1826 aa23.32■■□□□ 1.32
HMGN3-203ENST00000620514 MSH5O43196 834 aa23.31■■□□□ 1.32
HMGN3-203ENST00000620514 AMOTQ4VCS5 1084 aa23.31■■□□□ 1.32
HMGN3-203ENST00000620514 SYT17Q9BSW7 474 aa23.31■■□□□ 1.32
HMGN3-203ENST00000620514 KDRP35968 1356 aa23.3■■□□□ 1.32
HMGN3-203ENST00000620514 NPC1L1Q9UHC9 1359 aa23.29■■□□□ 1.32
HMGN3-203ENST00000620514 LOC102724428A0A0B4J2F2 783 aa23.29■■□□□ 1.32
HMGN3-203ENST00000620514 KDM6AO15550 1401 aaPredicted RBP23.29■■□□□ 1.32
HMGN3-203ENST00000620514 SIK1P57059 783 aa23.29■■□□□ 1.32
HMGN3-203ENST00000620514 ATG3Q9NT62 314 aa23.29■■□□□ 1.32
HMGN3-203ENST00000620514 C4BP0C0L5 1744 aa23.28■■□□□ 1.32
HMGN3-203ENST00000620514 COL24A1Q17RW2 1714 aa23.28■■□□□ 1.32
HMGN3-203ENST00000620514 HSP90AB1P08238 724 aaKnown RBP23.28■■□□□ 1.32
HMGN3-203ENST00000620514 DCAF5Q96JK2 942 aa23.28■■□□□ 1.32
HMGN3-203ENST00000620514 ERVV-2B6SEH9 535 aa23.27■■□□□ 1.32
HMGN3-203ENST00000620514 SMIM5Q71RC9 77 aa23.27■■□□□ 1.32
HMGN3-203ENST00000620514 AMIGO3Q86WK7 504 aa23.27■■□□□ 1.32
HMGN3-203ENST00000620514 HMOX1P09601 288 aa23.26■■□□□ 1.31
HMGN3-203ENST00000620514 POLD1P28340 1107 aa23.26■■□□□ 1.31
HMGN3-203ENST00000620514 ITPK1Q13572 414 aa23.26■■□□□ 1.31
HMGN3-203ENST00000620514 LINC00116Q8NCU8 138 aa23.26■■□□□ 1.31
HMGN3-203ENST00000620514 C1orf141Q5JVX7 400 aa23.25■■□□□ 1.31
HMGN3-203ENST00000620514 MSL1Q68DK7 614 aa23.25■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms