RNA–Protein interactions for RNA: ENST00000613788.1

CD48-203, Transcript of CD48 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD48, Length 1,500 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD48-203ENST00000613788 PHACTR3Q96KR7 559 aa19.44■□□□□ 0.7
CD48-203ENST00000613788 SPG7Q9UQ90 795 aa19.44■□□□□ 0.7
CD48-203ENST00000613788 RBM6P78332 1123 aaKnown RBP19.43■□□□□ 0.7
CD48-203ENST00000613788 FAM98CQ17RN3 349 aaKnown RBP19.43■□□□□ 0.7
CD48-203ENST00000613788 RGS17Q9UGC6 210 aaPredicted RBP19.43■□□□□ 0.7
CD48-203ENST00000613788 GAS2L2Q8NHY3 880 aa19.42■□□□□ 0.7
CD48-203ENST00000613788 ZCRB1Q8TBF4 217 aaKnown RBP19.42■□□□□ 0.7
CD48-203ENST00000613788 MEGF6O75095 1541 aa19.42■□□□□ 0.7
CD48-203ENST00000613788 EXOC5O00471 708 aa19.41■□□□□ 0.7
CD48-203ENST00000613788 OVOS2A0A0G2JMS6 1433 aa19.41■□□□□ 0.7
CD48-203ENST00000613788 DISP2A7MBM2 1401 aa19.41■□□□□ 0.7
CD48-203ENST00000613788 ONECUT3O60422 494 aaPredicted RBP19.41■□□□□ 0.7
CD48-203ENST00000613788 RXRBP28702 533 aa19.41■□□□□ 0.7
CD48-203ENST00000613788 A0A0G2JS52 829 aa19.4■□□□□ 0.7
CD48-203ENST00000613788 APAF1O14727 1248 aa19.4■□□□□ 0.7
CD48-203ENST00000613788 MYT1Q01538 1121 aa19.4■□□□□ 0.7
CD48-203ENST00000613788 MTHFSDQ2M296 383 aaKnown RBP19.4■□□□□ 0.7
CD48-203ENST00000613788 NFE2L2Q16236 605 aa19.39■□□□□ 0.69
CD48-203ENST00000613788 DDB1Q16531 1140 aa19.39■□□□□ 0.69
CD48-203ENST00000613788 GLI3P10071 1580 aa19.38■□□□□ 0.69
CD48-203ENST00000613788 TMPOP42166 694 aaKnown RBP19.38■□□□□ 0.69
CD48-203ENST00000613788 PARP4Q9UKK3 1724 aaKnown RBP19.37■□□□□ 0.69
CD48-203ENST00000613788 C1orf141Q5JVX7 400 aa19.37■□□□□ 0.69
CD48-203ENST00000613788 ZNF530Q6P9A1 599 aaPredicted RBP19.37■□□□□ 0.69
CD48-203ENST00000613788 POTEAQ6S8J7 498 aa19.37■□□□□ 0.69
CD48-203ENST00000613788 NGEFQ8N5V2 710 aa19.37■□□□□ 0.69
CD48-203ENST00000613788 PCDH11XQ9BZA7 1347 aa19.36■□□□□ 0.69
CD48-203ENST00000613788 PCDH11YQ9BZA8 1340 aa19.36■□□□□ 0.69
CD48-203ENST00000613788 RIPK4P57078 832 aa19.36■□□□□ 0.69
CD48-203ENST00000613788 IFNL2Q8IZJ0 200 aa19.36■□□□□ 0.69
CD48-203ENST00000613788 NEUROD2Q15784 382 aa19.35■□□□□ 0.69
CD48-203ENST00000613788 NCBP3Q53F19 620 aaKnown RBP19.35■□□□□ 0.69
CD48-203ENST00000613788 AKAP4Q5JQC9 854 aa19.35■□□□□ 0.69
CD48-203ENST00000613788 SEPT12Q8IYM1 358 aa19.35■□□□□ 0.69
CD48-203ENST00000613788 DDX54Q8TDD1 881 aaKnown RBP19.35■□□□□ 0.69
CD48-203ENST00000613788 RRP7AQ9Y3A4 280 aaKnown RBP19.35■□□□□ 0.69
CD48-203ENST00000613788 GNAT3A8MTJ3 354 aa19.34■□□□□ 0.69
CD48-203ENST00000613788 LMOD3Q0VAK6 560 aa19.34■□□□□ 0.69
CD48-203ENST00000613788 PDE3BQ13370 1112 aa19.34■□□□□ 0.69
CD48-203ENST00000613788 HTATSF1O43719 755 aaKnown RBP19.33■□□□□ 0.68
CD48-203ENST00000613788 HSP90AB1P08238 724 aaKnown RBP19.33■□□□□ 0.68
CD48-203ENST00000613788 PHKG2P15735 406 aa19.33■□□□□ 0.68
CD48-203ENST00000613788 HNRNPUQ00839 825 aaKnown RBP eCLIP19.33■□□□□ 0.68
CD48-203ENST00000613788 TNS2Q63HR2 1409 aa19.33■□□□□ 0.68
CD48-203ENST00000613788 RTF1Q92541 710 aaKnown RBP19.33■□□□□ 0.68
CD48-203ENST00000613788 WNK3Q9BYP7 1800 aa19.32■□□□□ 0.68
CD48-203ENST00000613788 CYP27B1O15528 508 aa19.32■□□□□ 0.68
CD48-203ENST00000613788 PKD1L3Q7Z443 1732 aa19.32■□□□□ 0.68
CD48-203ENST00000613788 SALL2Q9Y467 1007 aaPredicted RBP19.31■□□□□ 0.68
CD48-203ENST00000613788 MAP3K5Q99683 1374 aa19.31■□□□□ 0.68
CD48-203ENST00000613788 THSD7AQ9UPZ6 1657 aa19.31■□□□□ 0.68
CD48-203ENST00000613788 SENP3-EIF4A1A0A087X0R7 540 aa19.3■□□□□ 0.68
CD48-203ENST00000613788 CCDC27Q2M243 656 aa19.3■□□□□ 0.68
CD48-203ENST00000613788 NKX1-1Q15270 411 aaPredicted RBP19.3■□□□□ 0.68
CD48-203ENST00000613788 DCAF5Q96JK2 942 aa19.29■□□□□ 0.68
CD48-203ENST00000613788 TRIM35Q9UPQ4 493 aa19.29■□□□□ 0.68
CD48-203ENST00000613788 MARCH10Q8NA82 808 aaPredicted RBP19.28■□□□□ 0.68
CD48-203ENST00000613788 LRRC37A3O60309 1634 aa19.28■□□□□ 0.68
CD48-203ENST00000613788 MPRIPQ6WCQ1 1025 aa19.27■□□□□ 0.68
CD48-203ENST00000613788 KRT27Q7Z3Y8 459 aa19.27■□□□□ 0.68
CD48-203ENST00000613788 WWC1Q8IX03 1113 aa19.27■□□□□ 0.68
CD48-203ENST00000613788 RNMTO43148 476 aaKnown RBP19.26■□□□□ 0.67
CD48-203ENST00000613788 YTHDC1Q96MU7 727 aaKnown RBP19.26■□□□□ 0.67
CD48-203ENST00000613788 CALD1Q05682 793 aaKnown RBP19.25■□□□□ 0.67
CD48-203ENST00000613788 MCM10Q7L590 875 aa19.25■□□□□ 0.67
CD48-203ENST00000613788 IL17REQ8NFR9 667 aa19.25■□□□□ 0.67
CD48-203ENST00000613788 LGR6Q9HBX8 967 aa19.25■□□□□ 0.67
CD48-203ENST00000613788 DCTN1Q14203 1278 aa19.25■□□□□ 0.67
CD48-203ENST00000613788 WDR63Q8IWG1 891 aa19.24■□□□□ 0.67
CD48-203ENST00000613788 RGS12O14924 1447 aa19.23■□□□□ 0.67
CD48-203ENST00000613788 SHANK3Q9BYB0 1731 aa19.23■□□□□ 0.67
CD48-203ENST00000613788 ERVV-2B6SEH9 535 aa19.23■□□□□ 0.67
CD48-203ENST00000613788 TEFQ10587 303 aa19.23■□□□□ 0.67
CD48-203ENST00000613788 ZBED9Q6R2W3 1325 aa19.22■□□□□ 0.67
CD48-203ENST00000613788 CEMIPQ8WUJ3 1361 aa19.22■□□□□ 0.67
CD48-203ENST00000613788 DLG5Q8TDM6 1919 aa19.22■□□□□ 0.67
CD48-203ENST00000613788 THUMPD2Q9BTF0 503 aaKnown RBP19.21■□□□□ 0.67
CD48-203ENST00000613788 KDM6AO15550 1401 aaPredicted RBP19.21■□□□□ 0.67
CD48-203ENST00000613788 CABP4P57796 275 aa19.2■□□□□ 0.66
CD48-203ENST00000613788 FAM196AQ6ZSG2 479 aa19.2■□□□□ 0.66
CD48-203ENST00000613788 ZNF521Q96K83 1311 aa19.2■□□□□ 0.66
CD48-203ENST00000613788 GOLGA2Q08379 1002 aa19.2■□□□□ 0.66
CD48-203ENST00000613788 SLC52A2Q9HAB3 445 aa19.2■□□□□ 0.66
CD48-203ENST00000613788 BCL9O00512 1426 aa19.2■□□□□ 0.66
CD48-203ENST00000613788 IL16Q14005 1332 aa19.19■□□□□ 0.66
CD48-203ENST00000613788 TAF7Q15545 349 aaPredicted RBP19.19■□□□□ 0.66
CD48-203ENST00000613788 FAM182BQ5T319 152 aa19.19■□□□□ 0.66
CD48-203ENST00000613788 NFATC2IPQ8NCF5 419 aa19.18■□□□□ 0.66
CD48-203ENST00000613788 PRIM1P49642 420 aaKnown RBP19.17■□□□□ 0.66
CD48-203ENST00000613788 GNAI1P63096 354 aa19.17■□□□□ 0.66
CD48-203ENST00000613788 SYTL4Q96C24 671 aaPredicted RBP19.17■□□□□ 0.66
CD48-203ENST00000613788 BABAM1Q9NWV8 329 aa19.17■□□□□ 0.66
CD48-203ENST00000613788 TMOD3Q9NYL9 352 aa19.17■□□□□ 0.66
CD48-203ENST00000613788 ACSBG1Q96GR2 724 aa19.16■□□□□ 0.66
CD48-203ENST00000613788 CFAP44Q96MT7 982 aa19.16■□□□□ 0.66
CD48-203ENST00000613788 IFT57Q9NWB7 429 aa19.16■□□□□ 0.66
CD48-203ENST00000613788 LAS1LQ9Y4W2 734 aaKnown RBP19.16■□□□□ 0.66
CD48-203ENST00000613788 ADAMTS7Q9UKP4 1686 aa19.16■□□□□ 0.66
CD48-203ENST00000613788 BRWD3Q6RI45 1802 aa19.16■□□□□ 0.66
CD48-203ENST00000613788 SCN11AQ9UI33 1791 aa19.15■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms