RNA–Protein interactions for RNA: ENST00000609024.5

CHMP4A-211, Transcript of charged multivesicular body protein 4A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHMP4A, Length 735 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-211ENST00000609024 COG3Q96JB2 828 aa24.51■■□□□ 1.51
CHMP4A-211ENST00000609024 CCNL1Q9UK58 526 aaPredicted RBP24.51■■□□□ 1.51
CHMP4A-211ENST00000609024 A0A1W2PP64 1363 aa24.5■■□□□ 1.51
CHMP4A-211ENST00000609024 ZCRB1Q8TBF4 217 aaKnown RBP24.49■■□□□ 1.51
CHMP4A-211ENST00000609024 NLGN2Q8NFZ4 835 aa24.48■■□□□ 1.51
CHMP4A-211ENST00000609024 USP47Q96K76 1375 aa24.47■■□□□ 1.51
CHMP4A-211ENST00000609024 HMGB2P26583 209 aaKnown RBP24.47■■□□□ 1.51
CHMP4A-211ENST00000609024 PUS7Q96PZ0 661 aaKnown RBP24.46■■□□□ 1.51
CHMP4A-211ENST00000609024 DOT1LQ8TEK3 1739 aa24.45■■□□□ 1.5
CHMP4A-211ENST00000609024 HOXC9P31274 260 aa24.45■■□□□ 1.5
CHMP4A-211ENST00000609024 MAP3K19Q56UN5 1328 aa24.43■■□□□ 1.5
CHMP4A-211ENST00000609024 RAPGEF4Q8WZA2 1011 aa24.42■■□□□ 1.5
CHMP4A-211ENST00000609024 TUBGCP6Q96RT7 1819 aa24.42■■□□□ 1.5
CHMP4A-211ENST00000609024 LY75O60449 1722 aa24.41■■□□□ 1.5
CHMP4A-211ENST00000609024 COL24A1Q17RW2 1714 aa24.41■■□□□ 1.5
CHMP4A-211ENST00000609024 SLC24A1O60721 1099 aa24.41■■□□□ 1.5
CHMP4A-211ENST00000609024 MSL1Q68DK7 614 aa24.4■■□□□ 1.5
CHMP4A-211ENST00000609024 COL23A1Q86Y22 540 aaPredicted RBP24.4■■□□□ 1.5
CHMP4A-211ENST00000609024 SMG6Q86US8 1419 aaKnown RBP24.4■■□□□ 1.5
CHMP4A-211ENST00000609024 TONSLQ96HA7 1378 aa24.4■■□□□ 1.5
CHMP4A-211ENST00000609024 CGNL1Q0VF96 1302 aa24.39■■□□□ 1.5
CHMP4A-211ENST00000609024 YBX3P16989 372 aaKnown RBP eCLIP24.39■■□□□ 1.49
CHMP4A-211ENST00000609024 NSD2O96028 1365 aa24.39■■□□□ 1.49
CHMP4A-211ENST00000609024 TATP17735 454 aaPredicted RBP24.38■■□□□ 1.49
CHMP4A-211ENST00000609024 FLAD1Q8NFF5 587 aa24.38■■□□□ 1.49
CHMP4A-211ENST00000609024 MEGF6O75095 1541 aa24.36■■□□□ 1.49
CHMP4A-211ENST00000609024 FBLN1P23142 703 aa24.36■■□□□ 1.49
CHMP4A-211ENST00000609024 RTL1A6NKG5 1358 aa24.36■■□□□ 1.49
CHMP4A-211ENST00000609024 SHANK3Q9BYB0 1731 aa24.35■■□□□ 1.49
CHMP4A-211ENST00000609024 IFFO2Q5TF58 517 aa24.34■■□□□ 1.49
CHMP4A-211ENST00000609024 NBPF6Q5VWK0 638 aa24.34■■□□□ 1.49
CHMP4A-211ENST00000609024 USHBP1Q8N6Y0 703 aa24.34■■□□□ 1.49
CHMP4A-211ENST00000609024 NBPF4Q96M43 638 aa24.34■■□□□ 1.49
CHMP4A-211ENST00000609024 GPBP1L1Q9HC44 474 aaPredicted RBP24.34■■□□□ 1.49
CHMP4A-211ENST00000609024 CD2APQ9Y5K6 639 aa24.34■■□□□ 1.49
CHMP4A-211ENST00000609024 RGPD2P0DJD1 1756 aa24.34■■□□□ 1.49
CHMP4A-211ENST00000609024 RRS1Q15050 365 aaKnown RBP24.33■■□□□ 1.49
CHMP4A-211ENST00000609024 PCDH11XQ9BZA7 1347 aa24.33■■□□□ 1.48
CHMP4A-211ENST00000609024 PCDH11YQ9BZA8 1340 aa24.33■■□□□ 1.48
CHMP4A-211ENST00000609024 MPRIPQ6WCQ1 1025 aa24.32■■□□□ 1.48
CHMP4A-211ENST00000609024 ST20-MTHFSA0A0A6YYL1 179 aa24.31■■□□□ 1.48
CHMP4A-211ENST00000609024 AK7Q96M32 723 aa24.31■■□□□ 1.48
CHMP4A-211ENST00000609024 ATP10DQ9P241 1426 aa24.31■■□□□ 1.48
CHMP4A-211ENST00000609024 GOLGB1Q14789 3259 aaKnown RBP24.3■■□□□ 1.48
CHMP4A-211ENST00000609024 PALLDQ8WX93 1383 aa24.29■■□□□ 1.48
CHMP4A-211ENST00000609024 SMARCC1Q92922 1105 aaPredicted RBP24.29■■□□□ 1.48
CHMP4A-211ENST00000609024 GGNBP2Q9H3C7 697 aa24.29■■□□□ 1.48
CHMP4A-211ENST00000609024 C5P01031 1676 aa24.29■■□□□ 1.48
CHMP4A-211ENST00000609024 ZNF526Q8TF50 670 aaPredicted RBP24.27■■□□□ 1.48
CHMP4A-211ENST00000609024 TESK2Q96S53 571 aa24.27■■□□□ 1.48
CHMP4A-211ENST00000609024 FYB1O15117 783 aa24.25■■□□□ 1.47
CHMP4A-211ENST00000609024 NSD3Q9BZ95 1437 aa24.25■■□□□ 1.47
CHMP4A-211ENST00000609024 PHF14O94880 888 aa24.24■■□□□ 1.47
CHMP4A-211ENST00000609024 TMF1P82094 1093 aa24.24■■□□□ 1.47
CHMP4A-211ENST00000609024 HSP90AB2PQ58FF8 381 aa24.23■■□□□ 1.47
CHMP4A-211ENST00000609024 INSRP06213 1382 aa24.23■■□□□ 1.47
CHMP4A-211ENST00000609024 FLT4P35916 1363 aa24.22■■□□□ 1.47
CHMP4A-211ENST00000609024 IGSF1Q8N6C5 1336 aa24.21■■□□□ 1.47
CHMP4A-211ENST00000609024 WWC3Q9ULE0 1092 aa24.21■■□□□ 1.47
CHMP4A-211ENST00000609024 HSPA6P17066 643 aa24.2■■□□□ 1.46
CHMP4A-211ENST00000609024 C4BP0C0L5 1744 aa24.2■■□□□ 1.46
CHMP4A-211ENST00000609024 TAF1LQ8IZX4 1826 aa24.19■■□□□ 1.46
CHMP4A-211ENST00000609024 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP24.19■■□□□ 1.46
CHMP4A-211ENST00000609024 CDCA8Q53HL2 280 aa24.19■■□□□ 1.46
CHMP4A-211ENST00000609024 SPG7Q9UQ90 795 aa24.19■■□□□ 1.46
CHMP4A-211ENST00000609024 KIF24Q5T7B8 1368 aa24.18■■□□□ 1.46
CHMP4A-211ENST00000609024 CYP27B1O15528 508 aa24.18■■□□□ 1.46
CHMP4A-211ENST00000609024 PPM1GO15355 546 aaPredicted RBP24.17■■□□□ 1.46
CHMP4A-211ENST00000609024 SSFA2P28290 1259 aa24.17■■□□□ 1.46
CHMP4A-211ENST00000609024 CEP350Q5VT06 3117 aa24.16■■□□□ 1.46
CHMP4A-211ENST00000609024 PIGBQ92521 554 aa24.15■■□□□ 1.46
CHMP4A-211ENST00000609024 TMOD3Q9NYL9 352 aa24.15■■□□□ 1.46
CHMP4A-211ENST00000609024 ADCY9O60503 1353 aa24.15■■□□□ 1.46
CHMP4A-211ENST00000609024 ITGB4P16144 1822 aa24.14■■□□□ 1.45
CHMP4A-211ENST00000609024 KIF20BQ96Q89 1820 aa24.14■■□□□ 1.45
CHMP4A-211ENST00000609024 LOC102724428A0A0B4J2F2 783 aa24.13■■□□□ 1.45
CHMP4A-211ENST00000609024 SIK1P57059 783 aa24.13■■□□□ 1.45
CHMP4A-211ENST00000609024 GNPATO15228 680 aa24.12■■□□□ 1.45
CHMP4A-211ENST00000609024 ATP6V1AP38606 617 aa24.11■■□□□ 1.45
CHMP4A-211ENST00000609024 SMIM5Q71RC9 77 aa24.11■■□□□ 1.45
CHMP4A-211ENST00000609024 EMILIN1Q9Y6C2 1016 aa24.1■■□□□ 1.45
CHMP4A-211ENST00000609024 UBR3Q6ZT12 1888 aa24.1■■□□□ 1.45
CHMP4A-211ENST00000609024 NKX1-1Q15270 411 aaPredicted RBP24.09■■□□□ 1.45
CHMP4A-211ENST00000609024 AMIGO3Q86WK7 504 aa24.09■■□□□ 1.45
CHMP4A-211ENST00000609024 LINC00116Q8NCU8 138 aa24.09■■□□□ 1.45
CHMP4A-211ENST00000609024 TOGARAM1Q9Y4F4 1720 aa24.09■■□□□ 1.45
CHMP4A-211ENST00000609024 PKD1L3Q7Z443 1732 aa24.07■■□□□ 1.44
CHMP4A-211ENST00000609024 IFNL2Q8IZJ0 200 aa24.07■■□□□ 1.44
CHMP4A-211ENST00000609024 MMP10P09238 476 aa24.06■■□□□ 1.44
CHMP4A-211ENST00000609024 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP24.06■■□□□ 1.446e-7■■■■□ 20.8
CHMP4A-211ENST00000609024 TRAPPC3LQ5T215 181 aa24.05■■□□□ 1.44
CHMP4A-211ENST00000609024 ASAP1Q9ULH1 1129 aa24.05■■□□□ 1.44
CHMP4A-211ENST00000609024 BCS1LQ9Y276 419 aa24.04■■□□□ 1.44
CHMP4A-211ENST00000609024 RTCBQ9Y3I0 505 aaKnown RBP24.04■■□□□ 1.44
CHMP4A-211ENST00000609024 KIF3CO14782 793 aa24.03■■□□□ 1.44
CHMP4A-211ENST00000609024 APLP1P51693 650 aa24.03■■□□□ 1.44
CHMP4A-211ENST00000609024 NLGN1Q8N2Q7 840 aa24.03■■□□□ 1.44
CHMP4A-211ENST00000609024 TGFB2P61812 414 aa24.02■■□□□ 1.44
CHMP4A-211ENST00000609024 ITPK1Q13572 414 aa24.02■■□□□ 1.44
CHMP4A-211ENST00000609024 WASHC2AQ641Q2 1341 aa24.02■■□□□ 1.44
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms