RNA–Protein interactions for RNA: ENST00000601324.1

VRK3-222, Transcript of vaccinia related kinase 3, humanhuman

TSL 4

Gene VRK3, Length 552 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-222ENST00000601324 CCDC125Q86Z20 511 aa7.96□□□□□ -1.14
VRK3-222ENST00000601324 SEPT12Q8IYM1 358 aa7.96□□□□□ -1.14
VRK3-222ENST00000601324 CHIC2Q9UKJ5 165 aa7.96□□□□□ -1.14
VRK3-222ENST00000601324 TLL2Q9Y6L7 1015 aa7.96□□□□□ -1.14
VRK3-222ENST00000601324 SKIP12755 728 aa7.95□□□□□ -1.14
VRK3-222ENST00000601324 FOXC1Q12948 553 aa7.95□□□□□ -1.14
VRK3-222ENST00000601324 ARID5BQ14865 1188 aa7.95□□□□□ -1.14
VRK3-222ENST00000601324 FBXO41Q8TF61 875 aa7.95□□□□□ -1.14
VRK3-222ENST00000601324 MAFBQ9Y5Q3 323 aaPredicted RBP7.95□□□□□ -1.14
VRK3-222ENST00000601324 PRG4Q92954 1404 aaPredicted RBP7.95□□□□□ -1.14
VRK3-222ENST00000601324 COL17A1Q9UMD9 1497 aaPredicted RBP7.94□□□□□ -1.14
VRK3-222ENST00000601324 USP17L5A8MUK1 530 aa7.94□□□□□ -1.14
VRK3-222ENST00000601324 INTS6LQ5JSJ4 861 aaKnown RBP7.94□□□□□ -1.14
VRK3-222ENST00000601324 PLPP7Q8NBV4 271 aa7.94□□□□□ -1.14
VRK3-222ENST00000601324 ADCY10Q96PN6 1610 aa7.93□□□□□ -1.14
VRK3-222ENST00000601324 GDF9O60383 454 aa7.93□□□□□ -1.14
VRK3-222ENST00000601324 ADH1CP00326 375 aa7.93□□□□□ -1.14
VRK3-222ENST00000601324 FSHRP23945 695 aa7.93□□□□□ -1.14
VRK3-222ENST00000601324 LMOD1P29536 600 aaPredicted RBP7.93□□□□□ -1.14
VRK3-222ENST00000601324 GRM5P41594 1212 aa7.93□□□□□ -1.14
VRK3-222ENST00000601324 MAP7D1Q3KQU3 841 aa7.93□□□□□ -1.14
VRK3-222ENST00000601324 PLEKHM2Q8IWE5 1019 aa7.93□□□□□ -1.14
VRK3-222ENST00000601324 SNIP1Q8TAD8 396 aaKnown RBP7.93□□□□□ -1.14
VRK3-222ENST00000601324 CCDC85AQ96PX6 553 aaPredicted RBP7.93□□□□□ -1.14
VRK3-222ENST00000601324 FHAD1B1AJZ9 1412 aa7.93□□□□□ -1.14
VRK3-222ENST00000601324 USP17L3A6NCW0 530 aa7.92□□□□□ -1.14
VRK3-222ENST00000601324 USP17L4A6NCW7 530 aa7.92□□□□□ -1.14
VRK3-222ENST00000601324 LZTS3O60299 673 aaPredicted RBP7.92□□□□□ -1.14
VRK3-222ENST00000601324 NR5A1Q13285 461 aa7.92□□□□□ -1.14
VRK3-222ENST00000601324 USP17L2Q6R6M4 530 aa7.92□□□□□ -1.14
VRK3-222ENST00000601324 USP17L1Q7RTZ2 530 aa7.92□□□□□ -1.14
VRK3-222ENST00000601324 DOLKQ9UPQ8 538 aa7.92□□□□□ -1.14
VRK3-222ENST00000601324 TNFRSF10AO00220 468 aa7.91□□□□□ -1.14
VRK3-222ENST00000601324 PPP1R15AO75807 674 aaPredicted RBP7.91□□□□□ -1.14
VRK3-222ENST00000601324 ALDH1A1P00352 501 aa7.91□□□□□ -1.14
VRK3-222ENST00000601324 RFX1P22670 979 aa7.91□□□□□ -1.14
VRK3-222ENST00000601324 RAB15P59190 212 aa7.91□□□□□ -1.14
VRK3-222ENST00000601324 PRR20EP86478 221 aa7.91□□□□□ -1.14
VRK3-222ENST00000601324 PRR20CP86479 221 aa7.91□□□□□ -1.14
VRK3-222ENST00000601324 PRR20DP86480 221 aa7.91□□□□□ -1.14
VRK3-222ENST00000601324 PRR20BP86481 221 aa7.91□□□□□ -1.14
VRK3-222ENST00000601324 PRR20AP86496 221 aa7.91□□□□□ -1.14
VRK3-222ENST00000601324 TRAF7Q6Q0C0 670 aa7.91□□□□□ -1.14
VRK3-222ENST00000601324 TRIM67Q6ZTA4 783 aa7.91□□□□□ -1.14
VRK3-222ENST00000601324 PBXIP1Q96AQ6 731 aa7.91□□□□□ -1.14
VRK3-222ENST00000601324 PPRC1Q5VV67 1664 aaKnown RBP7.91□□□□□ -1.14
VRK3-222ENST00000601324 DHX9Q08211 1270 aaKnown RBP7.9□□□□□ -1.14
VRK3-222ENST00000601324 TSGA10IPQ3SY00 556 aa7.9□□□□□ -1.14
VRK3-222ENST00000601324 CYP4X1Q8N118 509 aa7.9□□□□□ -1.14
VRK3-222ENST00000601324 DEPDC4Q8N2C3 294 aa7.9□□□□□ -1.14
VRK3-222ENST00000601324 PCDHB11Q9Y5F2 797 aa7.9□□□□□ -1.14
VRK3-222ENST00000601324 TTC24A2A3L6 582 aaPredicted RBP7.89□□□□□ -1.15
VRK3-222ENST00000601324 ERVH48-1M5A8F1 160 aa7.89□□□□□ -1.15
VRK3-222ENST00000601324 NCOA4Q13772 614 aa7.89□□□□□ -1.15
VRK3-222ENST00000601324 EML3Q32P44 896 aa7.89□□□□□ -1.15
VRK3-222ENST00000601324 CCDC116Q8IYX3 515 aa7.89□□□□□ -1.15
VRK3-222ENST00000601324 TOR4AQ9NXH8 423 aa7.89□□□□□ -1.15
VRK3-222ENST00000601324 WASF2Q9Y6W5 498 aa7.89□□□□□ -1.15
VRK3-222ENST00000601324 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP7.88□□□□□ -1.15
VRK3-222ENST00000601324 SRPK2P78362 688 aaKnown RBP7.88□□□□□ -1.15
VRK3-222ENST00000601324 OXLD1Q5BKU9 147 aa7.88□□□□□ -1.15
VRK3-222ENST00000601324 ARXQ96QS3 562 aa7.88□□□□□ -1.15
VRK3-222ENST00000601324 CDCA7Q9BWT1 371 aaPredicted RBP7.88□□□□□ -1.15
VRK3-222ENST00000601324 NR3C2P08235 984 aa7.87□□□□□ -1.15
VRK3-222ENST00000601324 NNTQ13423 1086 aa7.87□□□□□ -1.15
VRK3-222ENST00000601324 KANK4Q5T7N3 995 aaPredicted RBP7.87□□□□□ -1.15
VRK3-222ENST00000601324 PPP1R26Q5T8A7 1209 aaPredicted RBP7.87□□□□□ -1.15
VRK3-222ENST00000601324 TRIM52Q96A61 297 aa7.87□□□□□ -1.15
VRK3-222ENST00000601324 SIRT1Q96EB6 747 aa7.87□□□□□ -1.15
VRK3-222ENST00000601324 VRTNQ9H8Y1 702 aa7.87□□□□□ -1.15
VRK3-222ENST00000601324 GLI2P10070 1586 aa7.87□□□□□ -1.15
VRK3-222ENST00000601324 ERICH3Q5RHP9 1530 aa7.87□□□□□ -1.15
VRK3-222ENST00000601324 RUSC2Q8N2Y8 1516 aa7.87□□□□□ -1.15
VRK3-222ENST00000601324 ATP5J2-PTCD1G3V325 749 aa7.86□□□□□ -1.15
VRK3-222ENST00000601324 J3QL48 77 aa7.86□□□□□ -1.15
VRK3-222ENST00000601324 USP4Q13107 963 aa7.86□□□□□ -1.15
VRK3-222ENST00000601324 MKRN1Q9UHC7 482 aaKnown RBP7.86□□□□□ -1.15
VRK3-222ENST00000601324 NOD1Q9Y239 953 aa7.86□□□□□ -1.15
VRK3-222ENST00000601324 EMILIN1Q9Y6C2 1016 aa7.86□□□□□ -1.15
VRK3-222ENST00000601324 TSPOAP1O95153 1857 aa7.85□□□□□ -1.15
VRK3-222ENST00000601324 SMPD1P17405 629 aa7.85□□□□□ -1.15
VRK3-222ENST00000601324 ERVK-9P63128 1117 aa7.85□□□□□ -1.15
VRK3-222ENST00000601324 TRIM50Q86XT4 487 aa7.85□□□□□ -1.15
VRK3-222ENST00000601324 TMPRSS4Q9NRS4 437 aa7.85□□□□□ -1.15
VRK3-222ENST00000601324 PGPEP1Q9NXJ5 209 aa7.85□□□□□ -1.15
VRK3-222ENST00000601324 MYCP01106 439 aaPredicted RBP7.84□□□□□ -1.15
VRK3-222ENST00000601324 SCTRP47872 440 aa7.84□□□□□ -1.15
VRK3-222ENST00000601324 CC2D2BQ6DHV5 1058 aa7.84□□□□□ -1.15
VRK3-222ENST00000601324 ZNF784Q8NCA9 323 aaPredicted RBP7.84□□□□□ -1.15
VRK3-222ENST00000601324 PDZRN3Q9UPQ7 1066 aa7.84□□□□□ -1.15
VRK3-222ENST00000601324 WRNQ14191 1432 aaPredicted RBP eCLIP7.84□□□□□ -1.15
VRK3-222ENST00000601324 ACIN1Q9UKV3 1341 aaKnown RBP7.83□□□□□ -1.16
VRK3-222ENST00000601324 FAM196BA6NMK8 535 aa7.83□□□□□ -1.16
VRK3-222ENST00000601324 LILRA1O75019 489 aa7.83□□□□□ -1.16
VRK3-222ENST00000601324 ATG7O95352 703 aa7.83□□□□□ -1.16
VRK3-222ENST00000601324 ATP1A2P50993 1020 aa7.83□□□□□ -1.16
VRK3-222ENST00000601324 MYT1Q01538 1121 aa7.83□□□□□ -1.16
VRK3-222ENST00000601324 CDCA8Q53HL2 280 aa7.83□□□□□ -1.16
VRK3-222ENST00000601324 HOMEZQ8IX15 550 aa7.83□□□□□ -1.16
VRK3-222ENST00000601324 CYLDQ9NQC7 956 aa7.83□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms