RNA–Protein interactions for RNA: ENST00000601038.5

SCAF1-204, Transcript of SR-related CTD associated factor 1, humanhuman

APPRIS ALT2 TSL 3

Gene SCAF1, Length 491 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF1-204ENST00000601038 INSRP06213 1382 aa23.62■■□□□ 1.37
SCAF1-204ENST00000601038 KIF24Q5T7B8 1368 aa23.62■■□□□ 1.37
SCAF1-204ENST00000601038 SLC27A3Q5K4L6 730 aa23.61■■□□□ 1.37
SCAF1-204ENST00000601038 PAPPAQ13219 1627 aa23.61■■□□□ 1.37
SCAF1-204ENST00000601038 KIF20BQ96Q89 1820 aa23.61■■□□□ 1.37
SCAF1-204ENST00000601038 DCAF8L1A6NGE4 600 aa23.6■■□□□ 1.37
SCAF1-204ENST00000601038 RAPGEF4Q8WZA2 1011 aa23.6■■□□□ 1.37
SCAF1-204ENST00000601038 SYTL4Q96C24 671 aaPredicted RBP23.6■■□□□ 1.37
SCAF1-204ENST00000601038 FLT4P35916 1363 aa23.6■■□□□ 1.37
SCAF1-204ENST00000601038 USHBP1Q8N6Y0 703 aa23.59■■□□□ 1.37
SCAF1-204ENST00000601038 NSD3Q9BZ95 1437 aa23.59■■□□□ 1.37
SCAF1-204ENST00000601038 MYOM1P52179 1685 aa23.58■■□□□ 1.37
SCAF1-204ENST00000601038 ZNF827Q17R98 1081 aa23.58■■□□□ 1.37
SCAF1-204ENST00000601038 SGIP1Q9BQI5 828 aa23.57■■□□□ 1.36
SCAF1-204ENST00000601038 SHANK3Q9BYB0 1731 aa23.56■■□□□ 1.36
SCAF1-204ENST00000601038 TATP17735 454 aaPredicted RBP23.56■■□□□ 1.36
SCAF1-204ENST00000601038 AKT1S1Q96B36 256 aa23.56■■□□□ 1.36
SCAF1-204ENST00000601038 NSD2O96028 1365 aa23.55■■□□□ 1.36
SCAF1-204ENST00000601038 EMILIN1Q9Y6C2 1016 aa23.55■■□□□ 1.36
SCAF1-204ENST00000601038 DOT1LQ8TEK3 1739 aa23.53■■□□□ 1.36
SCAF1-204ENST00000601038 YY1P25490 414 aa23.52■■□□□ 1.36
SCAF1-204ENST00000601038 SYT17Q9BSW7 474 aa23.52■■□□□ 1.36
SCAF1-204ENST00000601038 FHDC1Q9C0D6 1143 aaPredicted RBP23.52■■□□□ 1.36
SCAF1-204ENST00000601038 PCDH11XQ9BZA7 1347 aa23.52■■□□□ 1.36
SCAF1-204ENST00000601038 PCDH11YQ9BZA8 1340 aa23.52■■□□□ 1.36
SCAF1-204ENST00000601038 KCNQ4P56696 695 aa23.51■■□□□ 1.35
SCAF1-204ENST00000601038 SLC16A10Q8TF71 515 aa23.51■■□□□ 1.35
SCAF1-204ENST00000601038 PPM1GO15355 546 aaPredicted RBP23.5■■□□□ 1.35
SCAF1-204ENST00000601038 ARXQ96QS3 562 aa23.5■■□□□ 1.35
SCAF1-204ENST00000601038 EIF4G2P78344 907 aaKnown RBP eCLIP23.49■■□□□ 1.35
SCAF1-204ENST00000601038 POLR3GLQ9BT43 218 aa23.49■■□□□ 1.35
SCAF1-204ENST00000601038 TFCP2L1Q9NZI6 479 aa23.49■■□□□ 1.35
SCAF1-204ENST00000601038 CCNL1Q9UK58 526 aaPredicted RBP23.49■■□□□ 1.35
SCAF1-204ENST00000601038 LY75O60449 1722 aa23.49■■□□□ 1.35
SCAF1-204ENST00000601038 WASHC2AQ641Q2 1341 aa23.49■■□□□ 1.35
SCAF1-204ENST00000601038 PNPLA7Q6ZV29 1317 aa23.48■■□□□ 1.35
SCAF1-204ENST00000601038 CYP27B1O15528 508 aa23.46■■□□□ 1.35
SCAF1-204ENST00000601038 QSER1Q2KHR3 1735 aa23.46■■□□□ 1.35
SCAF1-204ENST00000601038 POLKQ9UBT6 870 aa23.46■■□□□ 1.35
SCAF1-204ENST00000601038 NCAPD2Q15021 1401 aa23.45■■□□□ 1.34
SCAF1-204ENST00000601038 HSPA5P11021 654 aaKnown RBP23.45■■□□□ 1.34
SCAF1-204ENST00000601038 MAP2P11137 1827 aaKnown RBP23.45■■□□□ 1.34
SCAF1-204ENST00000601038 CCER1Q8TC90 406 aaPredicted RBP23.44■■□□□ 1.34
SCAF1-204ENST00000601038 ANKRD26Q9UPS8 1709 aa23.44■■□□□ 1.34
SCAF1-204ENST00000601038 MAP3K5Q99683 1374 aa23.43■■□□□ 1.34
SCAF1-204ENST00000601038 HMGB2P26583 209 aaKnown RBP23.43■■□□□ 1.34
SCAF1-204ENST00000601038 EYA1Q99502 592 aa23.43■■□□□ 1.34
SCAF1-204ENST00000601038 MPRIPQ6WCQ1 1025 aa23.42■■□□□ 1.34
SCAF1-204ENST00000601038 SPG7Q9UQ90 795 aa23.42■■□□□ 1.34
SCAF1-204ENST00000601038 POLD1P28340 1107 aa23.41■■□□□ 1.34
SCAF1-204ENST00000601038 NKX1-1Q15270 411 aaPredicted RBP23.41■■□□□ 1.34
SCAF1-204ENST00000601038 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP23.41■■□□□ 1.34
SCAF1-204ENST00000601038 PANK3Q9H999 370 aa23.4■■□□□ 1.34
SCAF1-204ENST00000601038 PKD1L3Q7Z443 1732 aa23.39■■□□□ 1.34
SCAF1-204ENST00000601038 TUBGCP6Q96RT7 1819 aa23.39■■□□□ 1.33
SCAF1-204ENST00000601038 TNNT2P45379 298 aaPredicted RBP23.39■■□□□ 1.33
SCAF1-204ENST00000601038 PALLDQ8WX93 1383 aa23.39■■□□□ 1.33
SCAF1-204ENST00000601038 SMARCC1Q92922 1105 aaPredicted RBP23.38■■□□□ 1.33
SCAF1-204ENST00000601038 COL24A1Q17RW2 1714 aa23.38■■□□□ 1.33
SCAF1-204ENST00000601038 COL23A1Q86Y22 540 aaPredicted RBP23.37■■□□□ 1.33
SCAF1-204ENST00000601038 EIF4A2Q14240 407 aaKnown RBP23.36■■□□□ 1.33
SCAF1-204ENST00000601038 PIGBQ92521 554 aa23.36■■□□□ 1.33
SCAF1-204ENST00000601038 MSH5O43196 834 aa23.35■■□□□ 1.33
SCAF1-204ENST00000601038 TOGARAM1Q9Y4F4 1720 aa23.34■■□□□ 1.33
SCAF1-204ENST00000601038 ITGB4P16144 1822 aa23.34■■□□□ 1.33
SCAF1-204ENST00000601038 IFNL2Q8IZJ0 200 aa23.33■■□□□ 1.33
SCAF1-204ENST00000601038 FLAD1Q8NFF5 587 aa23.33■■□□□ 1.33
SCAF1-204ENST00000601038 C5P01031 1676 aa23.32■■□□□ 1.32
SCAF1-204ENST00000601038 PHKG2P15735 406 aa23.32■■□□□ 1.32
SCAF1-204ENST00000601038 KLHL34Q8N239 644 aa23.32■■□□□ 1.32
SCAF1-204ENST00000601038 PLEKHG2Q9H7P9 1386 aa23.31■■□□□ 1.32
SCAF1-204ENST00000601038 TMOD3Q9NYL9 352 aa23.3■■□□□ 1.32
SCAF1-204ENST00000601038 TAF1LQ8IZX4 1826 aa23.3■■□□□ 1.32
SCAF1-204ENST00000601038 IGSF1Q8N6C5 1336 aa23.3■■□□□ 1.32
SCAF1-204ENST00000601038 GPR162Q16538 588 aa23.29■■□□□ 1.32
SCAF1-204ENST00000601038 MORC1Q86VD1 984 aa23.28■■□□□ 1.32
SCAF1-204ENST00000601038 LOC102724428A0A0B4J2F2 783 aa23.27■■□□□ 1.32
SCAF1-204ENST00000601038 SIK1P57059 783 aa23.27■■□□□ 1.32
SCAF1-204ENST00000601038 AK7Q96M32 723 aa23.27■■□□□ 1.32
SCAF1-204ENST00000601038 KNSTRNQ9Y448 316 aa23.27■■□□□ 1.32
SCAF1-204ENST00000601038 C4BP0C0L5 1744 aa23.26■■□□□ 1.31
SCAF1-204ENST00000601038 MSL1Q68DK7 614 aa23.26■■□□□ 1.31
SCAF1-204ENST00000601038 NLGN2Q8NFZ4 835 aa23.26■■□□□ 1.31
SCAF1-204ENST00000601038 ASAP1Q9ULH1 1129 aa23.26■■□□□ 1.31
SCAF1-204ENST00000601038 CHD4Q14839 1912 aa23.25■■□□□ 1.31
SCAF1-204ENST00000601038 ZNF784Q8NCA9 323 aaPredicted RBP23.25■■□□□ 1.31
SCAF1-204ENST00000601038 PLEKHO1Q53GL0 409 aaPredicted RBP23.24■■□□□ 1.31
SCAF1-204ENST00000601038 HSP90AB1P08238 724 aaKnown RBP23.23■■□□□ 1.31
SCAF1-204ENST00000601038 ATG3Q9NT62 314 aa23.23■■□□□ 1.31
SCAF1-204ENST00000601038 ERVV-2B6SEH9 535 aa23.22■■□□□ 1.31
SCAF1-204ENST00000601038 AMOTQ4VCS5 1084 aa23.22■■□□□ 1.31
SCAF1-204ENST00000601038 AMIGO3Q86WK7 504 aa23.22■■□□□ 1.31
SCAF1-204ENST00000601038 LINC00116Q8NCU8 138 aa23.22■■□□□ 1.31
SCAF1-204ENST00000601038 DCAF5Q96JK2 942 aa23.22■■□□□ 1.31
SCAF1-204ENST00000601038 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP23.21■■□□□ 1.31
SCAF1-204ENST00000601038 SSFA2P28290 1259 aa23.21■■□□□ 1.31
SCAF1-204ENST00000601038 ATP6V1AP38606 617 aa23.21■■□□□ 1.31
SCAF1-204ENST00000601038 PELP1Q8IZL8 1130 aaKnown RBP23.21■■□□□ 1.31
SCAF1-204ENST00000601038 PHF14O94880 888 aa23.2■■□□□ 1.3
SCAF1-204ENST00000601038 ITPK1Q13572 414 aa23.2■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms