RNA–Protein interactions for RNA: ENST00000600259.5

VRK3-220, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 572 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-220ENST00000600259 ANKRD36BQ8N2N9 1353 aa8.68□□□□□ -1.02
VRK3-220ENST00000600259 ST20-MTHFSA0A0A6YYL1 179 aa8.67□□□□□ -1.02
VRK3-220ENST00000600259 COL24A1Q17RW2 1714 aa8.67□□□□□ -1.02
VRK3-220ENST00000600259 TFCP2L1Q9NZI6 479 aa8.67□□□□□ -1.02
VRK3-220ENST00000600259 FYB1O15117 783 aa8.66□□□□□ -1.02
VRK3-220ENST00000600259 YBX3P16989 372 aaKnown RBP eCLIP8.66□□□□□ -1.027e-7■■□□□ 11.7
VRK3-220ENST00000600259 POLD1P28340 1107 aa8.66□□□□□ -1.02
VRK3-220ENST00000600259 COG3Q96JB2 828 aa8.66□□□□□ -1.02
VRK3-220ENST00000600259 GOLGB1Q14789 3259 aaKnown RBP8.65□□□□□ -1.02
VRK3-220ENST00000600259 MEGF6O75095 1541 aa8.65□□□□□ -1.02
VRK3-220ENST00000600259 SENP3-EIF4A1A0A087X0R7 540 aa8.65□□□□□ -1.02
VRK3-220ENST00000600259 AMPHP49418 695 aa8.65□□□□□ -1.02
VRK3-220ENST00000600259 RRS1Q15050 365 aaKnown RBP8.65□□□□□ -1.02
VRK3-220ENST00000600259 SYTL4Q96C24 671 aaPredicted RBP8.65□□□□□ -1.02
VRK3-220ENST00000600259 CCNL1Q9UK58 526 aaPredicted RBP8.65□□□□□ -1.02
VRK3-220ENST00000600259 LTN1O94822 1766 aa8.65□□□□□ -1.02
VRK3-220ENST00000600259 AMIGO3Q86WK7 504 aa8.64□□□□□ -1.03
VRK3-220ENST00000600259 FAM208AQ9UK61 1670 aaKnown RBP8.64□□□□□ -1.03
VRK3-220ENST00000600259 KAT6BQ8WYB5 2073 aa8.64□□□□□ -1.03
VRK3-220ENST00000600259 CHD4Q14839 1912 aa8.64□□□□□ -1.03
VRK3-220ENST00000600259 QSER1Q2KHR3 1735 aa8.63□□□□□ -1.03
VRK3-220ENST00000600259 CGNL1Q0VF96 1302 aa8.63□□□□□ -1.03
VRK3-220ENST00000600259 CYP27B1O15528 508 aa8.63□□□□□ -1.03
VRK3-220ENST00000600259 HSP90AB2PQ58FF8 381 aa8.63□□□□□ -1.03
VRK3-220ENST00000600259 KLHL34Q8N239 644 aa8.63□□□□□ -1.03
VRK3-220ENST00000600259 USHBP1Q8N6Y0 703 aa8.63□□□□□ -1.03
VRK3-220ENST00000600259 GGNBP2Q9H3C7 697 aa8.63□□□□□ -1.03
VRK3-220ENST00000600259 CEP350Q5VT06 3117 aa8.63□□□□□ -1.03
VRK3-220ENST00000600259 GRIN3BO60391 1043 aa8.62□□□□□ -1.03
VRK3-220ENST00000600259 SLC24A1O60721 1099 aa8.62□□□□□ -1.03
VRK3-220ENST00000600259 LY75O60449 1722 aa8.62□□□□□ -1.03
VRK3-220ENST00000600259 RTL1A6NKG5 1358 aa8.61□□□□□ -1.03
VRK3-220ENST00000600259 INSRP06213 1382 aa8.61□□□□□ -1.03
VRK3-220ENST00000600259 USP47Q96K76 1375 aa8.61□□□□□ -1.03
VRK3-220ENST00000600259 SHANK3Q9BYB0 1731 aa8.61□□□□□ -1.03
VRK3-220ENST00000600259 GIGYF1O75420 1035 aaPredicted RBP8.61□□□□□ -1.03
VRK3-220ENST00000600259 NKX1-1Q15270 411 aaPredicted RBP8.61□□□□□ -1.03
VRK3-220ENST00000600259 MSL1Q68DK7 614 aa8.61□□□□□ -1.03
VRK3-220ENST00000600259 SMIM5Q71RC9 77 aa8.61□□□□□ -1.03
VRK3-220ENST00000600259 PELP1Q8IZL8 1130 aaKnown RBP8.61□□□□□ -1.03
VRK3-220ENST00000600259 RAPGEF4Q8WZA2 1011 aa8.61□□□□□ -1.03
VRK3-220ENST00000600259 CARD14Q9BXL6 1004 aa8.61□□□□□ -1.03
VRK3-220ENST00000600259 CD2APQ9Y5K6 639 aa8.61□□□□□ -1.03
VRK3-220ENST00000600259 TUBGCP6Q96RT7 1819 aa8.61□□□□□ -1.03
VRK3-220ENST00000600259 TATP17735 454 aaPredicted RBP8.6□□□□□ -1.03
VRK3-220ENST00000600259 PIGBQ92521 554 aa8.6□□□□□ -1.03
VRK3-220ENST00000600259 TONSLQ96HA7 1378 aa8.6□□□□□ -1.03
VRK3-220ENST00000600259 RGPD2P0DJD1 1756 aa8.59□□□□□ -1.03
VRK3-220ENST00000600259 MPRIPQ6WCQ1 1025 aa8.59□□□□□ -1.03
VRK3-220ENST00000600259 FLAD1Q8NFF5 587 aa8.59□□□□□ -1.03
VRK3-220ENST00000600259 DOT1LQ8TEK3 1739 aa8.59□□□□□ -1.03
VRK3-220ENST00000600259 KIF24Q5T7B8 1368 aa8.59□□□□□ -1.03
VRK3-220ENST00000600259 PALLDQ8WX93 1383 aa8.59□□□□□ -1.03
VRK3-220ENST00000600259 NCAPD2Q15021 1401 aa8.58□□□□□ -1.04
VRK3-220ENST00000600259 EMILIN1Q9Y6C2 1016 aa8.58□□□□□ -1.04
VRK3-220ENST00000600259 ADCY9O60503 1353 aa8.58□□□□□ -1.04
VRK3-220ENST00000600259 PCDH11XQ9BZA7 1347 aa8.57□□□□□ -1.04
VRK3-220ENST00000600259 PCDH11YQ9BZA8 1340 aa8.57□□□□□ -1.04
VRK3-220ENST00000600259 ATP10DQ9P241 1426 aa8.57□□□□□ -1.04
VRK3-220ENST00000600259 HMGB2P26583 209 aaKnown RBP8.57□□□□□ -1.04
VRK3-220ENST00000600259 TMF1P82094 1093 aa8.57□□□□□ -1.04
VRK3-220ENST00000600259 IFFO2Q5TF58 517 aa8.57□□□□□ -1.04
VRK3-220ENST00000600259 LINC00116Q8NCU8 138 aa8.57□□□□□ -1.04
VRK3-220ENST00000600259 SMARCC1Q92922 1105 aaPredicted RBP8.57□□□□□ -1.04
VRK3-220ENST00000600259 FLT4P35916 1363 aa8.57□□□□□ -1.04
VRK3-220ENST00000600259 WASHC2AQ641Q2 1341 aa8.56□□□□□ -1.04
VRK3-220ENST00000600259 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP8.56□□□□□ -1.04
VRK3-220ENST00000600259 LOC102724428A0A0B4J2F2 783 aa8.56□□□□□ -1.04
VRK3-220ENST00000600259 SIK1P57059 783 aa8.56□□□□□ -1.04
VRK3-220ENST00000600259 MAPK8IP2Q13387 824 aaPredicted RBP8.56□□□□□ -1.04
VRK3-220ENST00000600259 ITPK1Q13572 414 aa8.56□□□□□ -1.04
VRK3-220ENST00000600259 EYA1Q99502 592 aa8.56□□□□□ -1.04
VRK3-220ENST00000600259 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP8.56□□□□□ -1.041e-7■■□□□ 12.1
VRK3-220ENST00000600259 ASAP1Q9ULH1 1129 aa8.56□□□□□ -1.04
VRK3-220ENST00000600259 SSFA2P28290 1259 aa8.55□□□□□ -1.04
VRK3-220ENST00000600259 SLC4A9Q96Q91 983 aa8.55□□□□□ -1.04
VRK3-220ENST00000600259 POLKQ9UBT6 870 aa8.55□□□□□ -1.04
VRK3-220ENST00000600259 IGSF1Q8N6C5 1336 aa8.54□□□□□ -1.04
VRK3-220ENST00000600259 SMG6Q86US8 1419 aaKnown RBP8.54□□□□□ -1.04
VRK3-220ENST00000600259 KIF3CO14782 793 aa8.54□□□□□ -1.04
VRK3-220ENST00000600259 AK7Q96M32 723 aa8.54□□□□□ -1.04
VRK3-220ENST00000600259 GPBP1L1Q9HC44 474 aaPredicted RBP8.54□□□□□ -1.04
VRK3-220ENST00000600259 ATG3Q9NT62 314 aa8.54□□□□□ -1.04
VRK3-220ENST00000600259 MAP2P11137 1827 aaKnown RBP8.53□□□□□ -1.04
VRK3-220ENST00000600259 PHF14O94880 888 aa8.53□□□□□ -1.04
VRK3-220ENST00000600259 PHKG2P15735 406 aa8.53□□□□□ -1.04
VRK3-220ENST00000600259 HSPA6P17066 643 aa8.53□□□□□ -1.04
VRK3-220ENST00000600259 CDCA8Q53HL2 280 aa8.53□□□□□ -1.04
VRK3-220ENST00000600259 SPG7Q9UQ90 795 aa8.53□□□□□ -1.04
VRK3-220ENST00000600259 C4BP0C0L5 1744 aa8.53□□□□□ -1.04
VRK3-220ENST00000600259 TOGARAM1Q9Y4F4 1720 aa8.53□□□□□ -1.04
VRK3-220ENST00000600259 C5P01031 1676 aa8.53□□□□□ -1.04
VRK3-220ENST00000600259 TAF1LQ8IZX4 1826 aa8.52□□□□□ -1.04
VRK3-220ENST00000600259 IFNL2Q8IZJ0 200 aa8.52□□□□□ -1.05
VRK3-220ENST00000600259 TMOD3Q9NYL9 352 aa8.52□□□□□ -1.05
VRK3-220ENST00000600259 WWC3Q9ULE0 1092 aa8.52□□□□□ -1.05
VRK3-220ENST00000600259 NSD3Q9BZ95 1437 aa8.52□□□□□ -1.05
VRK3-220ENST00000600259 GNPATO15228 680 aa8.51□□□□□ -1.05
VRK3-220ENST00000600259 PPM1GO15355 546 aaPredicted RBP8.51□□□□□ -1.05
VRK3-220ENST00000600259 MMP10P09238 476 aa8.51□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms