RNA–Protein interactions for RNA: ENST00000600137.5

VRK3-219, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 822 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-219ENST00000600137 ZCRB1Q8TBF4 217 aaKnown RBP18.5■□□□□ 0.55
VRK3-219ENST00000600137 RAPGEF4Q8WZA2 1011 aa18.5■□□□□ 0.55
VRK3-219ENST00000600137 UPF1Q92900 1129 aaKnown RBP eCLIP18.49■□□□□ 0.55
VRK3-219ENST00000600137 CFAP53Q96M91 514 aa18.49■□□□□ 0.55
VRK3-219ENST00000600137 PKD1L3Q7Z443 1732 aa18.49■□□□□ 0.55
VRK3-219ENST00000600137 BCL9O00512 1426 aa18.48■□□□□ 0.55
VRK3-219ENST00000600137 CYP27B1O15528 508 aa18.47■□□□□ 0.55
VRK3-219ENST00000600137 HMOX1P09601 288 aa18.47■□□□□ 0.55
VRK3-219ENST00000600137 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.47■□□□□ 0.551e-7■■□□□ 12.1
VRK3-219ENST00000600137 PLEKHG2Q9H7P9 1386 aa18.46■□□□□ 0.55
VRK3-219ENST00000600137 CCDC184Q52MB2 194 aa18.46■□□□□ 0.55
VRK3-219ENST00000600137 FAM196AQ6ZSG2 479 aa18.46■□□□□ 0.55
VRK3-219ENST00000600137 SBF2Q86WG5 1849 aa18.46■□□□□ 0.55
VRK3-219ENST00000600137 U2SURPO15042 1029 aaKnown RBP18.45■□□□□ 0.54
VRK3-219ENST00000600137 DDX54Q8TDD1 881 aaKnown RBP18.45■□□□□ 0.54
VRK3-219ENST00000600137 PTF1AQ7RTS3 328 aa18.44■□□□□ 0.54
VRK3-219ENST00000600137 RSPH6AQ9H0K4 717 aa18.44■□□□□ 0.54
VRK3-219ENST00000600137 NUDCQ9Y266 331 aa18.43■□□□□ 0.54
VRK3-219ENST00000600137 ANP32CO43423 234 aa18.42■□□□□ 0.54
VRK3-219ENST00000600137 NKX1-1Q15270 411 aaPredicted RBP18.42■□□□□ 0.54
VRK3-219ENST00000600137 SPG7Q9UQ90 795 aa18.41■□□□□ 0.54
VRK3-219ENST00000600137 FCHSD2O94868 740 aa18.4■□□□□ 0.54
VRK3-219ENST00000600137 U2AF1L5P0DN76 240 aaPredicted RBP18.4■□□□□ 0.54
VRK3-219ENST00000600137 PHKG2P15735 406 aa18.4■□□□□ 0.54
VRK3-219ENST00000600137 U2AF1Q01081 240 aaKnown RBP eCLIP18.4■□□□□ 0.54
VRK3-219ENST00000600137 PLEKHO1Q53GL0 409 aaPredicted RBP18.4■□□□□ 0.54
VRK3-219ENST00000600137 PHACTR3Q96KR7 559 aa18.4■□□□□ 0.54
VRK3-219ENST00000600137 PCDH11XQ9BZA7 1347 aa18.4■□□□□ 0.54
VRK3-219ENST00000600137 PCDH11YQ9BZA8 1340 aa18.4■□□□□ 0.54
VRK3-219ENST00000600137 KCNQ2O43526 872 aa18.39■□□□□ 0.53
VRK3-219ENST00000600137 TRIM37O94972 964 aa18.39■□□□□ 0.53
VRK3-219ENST00000600137 AMOTQ4VCS5 1084 aa18.39■□□□□ 0.53
VRK3-219ENST00000600137 TNS1Q9HBL0 1735 aaKnown RBP18.38■□□□□ 0.53
VRK3-219ENST00000600137 PRKAR2BP31323 418 aa18.38■□□□□ 0.53
VRK3-219ENST00000600137 MTHFSDQ2M296 383 aaKnown RBP18.38■□□□□ 0.53
VRK3-219ENST00000600137 CCDC125Q86Z20 511 aa18.38■□□□□ 0.53
VRK3-219ENST00000600137 PLEKHF1Q96S99 279 aa18.38■□□□□ 0.53
VRK3-219ENST00000600137 IFNL2Q8IZJ0 200 aa18.37■□□□□ 0.53
VRK3-219ENST00000600137 ACSBG1Q96GR2 724 aa18.37■□□□□ 0.53
VRK3-219ENST00000600137 TOGARAM1Q9Y4F4 1720 aa18.37■□□□□ 0.53
VRK3-219ENST00000600137 KAT6BQ8WYB5 2073 aa18.37■□□□□ 0.53
VRK3-219ENST00000600137 ZNF530Q6P9A1 599 aaPredicted RBP18.36■□□□□ 0.53
VRK3-219ENST00000600137 BCL11BQ9C0K0 894 aaPredicted RBP18.36■□□□□ 0.53
VRK3-219ENST00000600137 NHSQ6T4R5 1651 aa18.35■□□□□ 0.53
VRK3-219ENST00000600137 ADAMTS8Q9UP79 889 aa18.35■□□□□ 0.53
VRK3-219ENST00000600137 PRIM1P49642 420 aaKnown RBP18.34■□□□□ 0.53
VRK3-219ENST00000600137 DOT1LQ8TEK3 1739 aa18.34■□□□□ 0.53
VRK3-219ENST00000600137 KDM6AO15550 1401 aaPredicted RBP18.33■□□□□ 0.53
VRK3-219ENST00000600137 DEFB132Q7Z7B7 95 aa18.33■□□□□ 0.52
VRK3-219ENST00000600137 PNISRQ8TF01 805 aaKnown RBP18.33■□□□□ 0.52
VRK3-219ENST00000600137 ITGB4P16144 1822 aa18.33■□□□□ 0.52
VRK3-219ENST00000600137 AKAP4Q5JQC9 854 aa18.32■□□□□ 0.52
VRK3-219ENST00000600137 ADAMTS7Q9UKP4 1686 aa18.31■□□□□ 0.52
VRK3-219ENST00000600137 DIEXFQ68CQ4 756 aaKnown RBP18.31■□□□□ 0.52
VRK3-219ENST00000600137 CAMKK2Q96RR4 588 aa18.31■□□□□ 0.52
VRK3-219ENST00000600137 LGR6Q9HBX8 967 aa18.31■□□□□ 0.52
VRK3-219ENST00000600137 BTAF1O14981 1849 aa18.3■□□□□ 0.52
VRK3-219ENST00000600137 APBA3O96018 575 aa18.3■□□□□ 0.52
VRK3-219ENST00000600137 MPRIPQ6WCQ1 1025 aa18.3■□□□□ 0.52
VRK3-219ENST00000600137 DCAF5Q96JK2 942 aa18.3■□□□□ 0.52
VRK3-219ENST00000600137 SCN11AQ9UI33 1791 aa18.3■□□□□ 0.52
VRK3-219ENST00000600137 PLSCR1O15162 318 aa18.29■□□□□ 0.52
VRK3-219ENST00000600137 EN1Q05925 392 aaPredicted RBP18.29■□□□□ 0.52
VRK3-219ENST00000600137 PROM2Q8N271 834 aa18.29■□□□□ 0.52
VRK3-219ENST00000600137 IL17REQ8NFR9 667 aa18.29■□□□□ 0.52
VRK3-219ENST00000600137 GAS2L2Q8NHY3 880 aa18.29■□□□□ 0.52
VRK3-219ENST00000600137 PIGBQ92521 554 aa18.29■□□□□ 0.52
VRK3-219ENST00000600137 VIRMAQ69YN4 1812 aaKnown RBP18.28■□□□□ 0.52
VRK3-219ENST00000600137 ERVV-2B6SEH9 535 aa18.28■□□□□ 0.52
VRK3-219ENST00000600137 HSP90AB1P08238 724 aaKnown RBP18.28■□□□□ 0.52
VRK3-219ENST00000600137 C1orf141Q5JVX7 400 aa18.28■□□□□ 0.52
VRK3-219ENST00000600137 MRS2Q9HD23 443 aa18.28■□□□□ 0.52
VRK3-219ENST00000600137 RNMTO43148 476 aaKnown RBP18.27■□□□□ 0.52
VRK3-219ENST00000600137 WDR43Q15061 677 aaKnown RBP eCLIP18.27■□□□□ 0.52
VRK3-219ENST00000600137 DLG5Q8TDM6 1919 aa18.27■□□□□ 0.51
VRK3-219ENST00000600137 BAG6P46379 1132 aa18.26■□□□□ 0.51
VRK3-219ENST00000600137 SF3B2Q13435 895 aaKnown RBP18.26■□□□□ 0.51
VRK3-219ENST00000600137 EZH2Q15910 746 aaKnown RBP18.26■□□□□ 0.51
VRK3-219ENST00000600137 GNAT3A8MTJ3 354 aa18.25■□□□□ 0.51
VRK3-219ENST00000600137 CCDC146Q8IYE0 955 aa18.25■□□□□ 0.51
VRK3-219ENST00000600137 SYTL4Q96C24 671 aaPredicted RBP18.25■□□□□ 0.51
VRK3-219ENST00000600137 PNNQ9H307 717 aaKnown RBP18.25■□□□□ 0.51
VRK3-219ENST00000600137 MAP3K5Q99683 1374 aa18.25■□□□□ 0.51
VRK3-219ENST00000600137 NFE2L2Q16236 605 aa18.24■□□□□ 0.51
VRK3-219ENST00000600137 MIER1Q8N108 512 aa18.24■□□□□ 0.51
VRK3-219ENST00000600137 NFATC2IPQ8NCF5 419 aa18.24■□□□□ 0.51
VRK3-219ENST00000600137 RUNDC1Q96C34 613 aa18.24■□□□□ 0.51
VRK3-219ENST00000600137 CEMIPQ8WUJ3 1361 aa18.24■□□□□ 0.51
VRK3-219ENST00000600137 RGPD3A6NKT7 1758 aaPredicted RBP18.24■□□□□ 0.51
VRK3-219ENST00000600137 RGPD4Q7Z3J3 1758 aa18.24■□□□□ 0.51
VRK3-219ENST00000600137 MRC1P22897 1456 aa18.23■□□□□ 0.51
VRK3-219ENST00000600137 CCER2I3L3R5 266 aa18.22■□□□□ 0.51
VRK3-219ENST00000600137 HTATSF1O43719 755 aaKnown RBP18.22■□□□□ 0.51
VRK3-219ENST00000600137 TMPOP42166 694 aaKnown RBP18.22■□□□□ 0.51
VRK3-219ENST00000600137 SLC52A2Q9HAB3 445 aa18.22■□□□□ 0.51
VRK3-219ENST00000600137 ASAP1Q9ULH1 1129 aa18.22■□□□□ 0.51
VRK3-219ENST00000600137 RREB1Q92766 1687 aa18.22■□□□□ 0.51
VRK3-219ENST00000600137 LY75O60449 1722 aa18.21■□□□□ 0.51
VRK3-219ENST00000600137 DCTN1Q14203 1278 aa18.21■□□□□ 0.51
VRK3-219ENST00000600137 ATG3Q9NT62 314 aa18.21■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms