RNA–Protein interactions for RNA: ENST00000595945.5

SHKBP1-211, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-211ENST00000595945 LMOD3Q0VAK6 560 aa19.32■□□□□ 0.68
SHKBP1-211ENST00000595945 SPINK5Q9NQ38 1064 aaPredicted RBP19.32■□□□□ 0.68
SHKBP1-211ENST00000595945 ADAMTS7Q9UKP4 1686 aa19.31■□□□□ 0.68
SHKBP1-211ENST00000595945 E9PSI1 815 aa19.31■□□□□ 0.68
SHKBP1-211ENST00000595945 LARP1Q6PKG0 1096 aaKnown RBP19.31■□□□□ 0.68
SHKBP1-211ENST00000595945 SHANK3Q9BYB0 1731 aa19.31■□□□□ 0.68
SHKBP1-211ENST00000595945 TNKS1BP1Q9C0C2 1729 aaKnown RBP19.31■□□□□ 0.68
SHKBP1-211ENST00000595945 HTATSF1O43719 755 aaKnown RBP19.3■□□□□ 0.68
SHKBP1-211ENST00000595945 EVA1CP58658 441 aa19.3■□□□□ 0.68
SHKBP1-211ENST00000595945 AMOTQ4VCS5 1084 aa19.3■□□□□ 0.68
SHKBP1-211ENST00000595945 DUSP27Q5VZP5 1158 aa19.3■□□□□ 0.68
SHKBP1-211ENST00000595945 TOM1L2Q6ZVM7 507 aa19.3■□□□□ 0.68
SHKBP1-211ENST00000595945 STRN4Q9NRL3 753 aa19.3■□□□□ 0.68
SHKBP1-211ENST00000595945 OVOS2A0A0G2JMS6 1433 aa19.29■□□□□ 0.68
SHKBP1-211ENST00000595945 PLEKHO1Q53GL0 409 aaPredicted RBP19.29■□□□□ 0.68
SHKBP1-211ENST00000595945 MAP3K5Q99683 1374 aa19.29■□□□□ 0.68
SHKBP1-211ENST00000595945 RAPGEF4Q8WZA2 1011 aa19.28■□□□□ 0.68
SHKBP1-211ENST00000595945 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP19.28■□□□□ 0.68
SHKBP1-211ENST00000595945 SCN11AQ9UI33 1791 aa19.27■□□□□ 0.68
SHKBP1-211ENST00000595945 TATP17735 454 aaPredicted RBP19.27■□□□□ 0.68
SHKBP1-211ENST00000595945 DISP2A7MBM2 1401 aa19.26■□□□□ 0.67
SHKBP1-211ENST00000595945 GNAT3A8MTJ3 354 aa19.26■□□□□ 0.67
SHKBP1-211ENST00000595945 THUMPD2Q9BTF0 503 aaKnown RBP19.26■□□□□ 0.67
SHKBP1-211ENST00000595945 ZNF853P0CG23 659 aa19.25■□□□□ 0.67
SHKBP1-211ENST00000595945 CALD1Q05682 793 aaKnown RBP19.25■□□□□ 0.67
SHKBP1-211ENST00000595945 SIPA1L3O60292 1781 aaPredicted RBP19.24■□□□□ 0.67
SHKBP1-211ENST00000595945 BCL9LQ86UU0 1499 aa19.24■□□□□ 0.67
SHKBP1-211ENST00000595945 DCTN1Q14203 1278 aa19.24■□□□□ 0.67
SHKBP1-211ENST00000595945 AKAP4Q5JQC9 854 aa19.24■□□□□ 0.67
SHKBP1-211ENST00000595945 ZNF530Q6P9A1 599 aaPredicted RBP19.24■□□□□ 0.67
SHKBP1-211ENST00000595945 FNBP4Q8N3X1 1017 aaPredicted RBP19.24■□□□□ 0.67
SHKBP1-211ENST00000595945 MCM10Q7L590 875 aa19.23■□□□□ 0.67
SHKBP1-211ENST00000595945 MYH16Q9H6N6 1097 aa19.23■□□□□ 0.67
SHKBP1-211ENST00000595945 IFT57Q9NWB7 429 aa19.23■□□□□ 0.67
SHKBP1-211ENST00000595945 CEMIPQ8WUJ3 1361 aa19.22■□□□□ 0.67
SHKBP1-211ENST00000595945 IL2RBP14784 551 aa19.22■□□□□ 0.67
SHKBP1-211ENST00000595945 SPG7Q9UQ90 795 aa19.22■□□□□ 0.67
SHKBP1-211ENST00000595945 SPATA31A1Q5TZJ5 1347 aa19.22■□□□□ 0.67
SHKBP1-211ENST00000595945 FANCIQ9NVI1 1328 aa19.22■□□□□ 0.67
SHKBP1-211ENST00000595945 UNC5CLQ8IV45 518 aa19.21■□□□□ 0.67
SHKBP1-211ENST00000595945 IL17REQ8NFR9 667 aa19.21■□□□□ 0.67
SHKBP1-211ENST00000595945 RTF1Q92541 710 aaKnown RBP19.21■□□□□ 0.67
SHKBP1-211ENST00000595945 SPATA31A5Q5VU36 1347 aa19.21■□□□□ 0.67
SHKBP1-211ENST00000595945 SPATA31A7Q8IWB4 1347 aa19.21■□□□□ 0.67
SHKBP1-211ENST00000595945 GNAI1P63096 354 aa19.2■□□□□ 0.66
SHKBP1-211ENST00000595945 NGLY1Q96IV0 654 aa19.2■□□□□ 0.66
SHKBP1-211ENST00000595945 CFAP44Q96MT7 982 aa19.2■□□□□ 0.66
SHKBP1-211ENST00000595945 C8orf37Q96NL8 207 aa19.2■□□□□ 0.66
SHKBP1-211ENST00000595945 KDM3BQ7LBC6 1761 aa19.19■□□□□ 0.66
SHKBP1-211ENST00000595945 PHKG2P15735 406 aa19.19■□□□□ 0.66
SHKBP1-211ENST00000595945 THRAP3Q9Y2W1 955 aaKnown RBP19.19■□□□□ 0.66
SHKBP1-211ENST00000595945 CHL1O00533 1208 aa19.18■□□□□ 0.66
SHKBP1-211ENST00000595945 CYP27B1O15528 508 aa19.18■□□□□ 0.66
SHKBP1-211ENST00000595945 C1orf141Q5JVX7 400 aa19.18■□□□□ 0.66
SHKBP1-211ENST00000595945 ZCRB1Q8TBF4 217 aaKnown RBP19.18■□□□□ 0.66
SHKBP1-211ENST00000595945 TSR2Q969E8 191 aaKnown RBP19.18■□□□□ 0.66
SHKBP1-211ENST00000595945 RNMTO43148 476 aaKnown RBP19.17■□□□□ 0.66
SHKBP1-211ENST00000595945 VPS72Q15906 364 aa19.17■□□□□ 0.66
SHKBP1-211ENST00000595945 IFNL2Q8IZJ0 200 aa19.17■□□□□ 0.66
SHKBP1-211ENST00000595945 LGR6Q9HBX8 967 aa19.17■□□□□ 0.66
SHKBP1-211ENST00000595945 KDM6AO15550 1401 aaPredicted RBP19.17■□□□□ 0.66
SHKBP1-211ENST00000595945 MRC1P22897 1456 aa19.16■□□□□ 0.66
SHKBP1-211ENST00000595945 FBXO41Q8TF61 875 aa19.16■□□□□ 0.66
SHKBP1-211ENST00000595945 MBIPQ9NS73 344 aa19.16■□□□□ 0.66
SHKBP1-211ENST00000595945 RNF123Q5XPI4 1314 aa19.16■□□□□ 0.66
SHKBP1-211ENST00000595945 PCDH11XQ9BZA7 1347 aa19.16■□□□□ 0.66
SHKBP1-211ENST00000595945 PCDH11YQ9BZA8 1340 aa19.16■□□□□ 0.66
SHKBP1-211ENST00000595945 MPRIPQ6WCQ1 1025 aa19.15■□□□□ 0.66
SHKBP1-211ENST00000595945 BARGINQ6ZT62 677 aa19.15■□□□□ 0.66
SHKBP1-211ENST00000595945 CDCA7Q9BWT1 371 aaPredicted RBP19.15■□□□□ 0.66
SHKBP1-211ENST00000595945 BABAM1Q9NWV8 329 aa19.15■□□□□ 0.66
SHKBP1-211ENST00000595945 USP35Q9P2H5 1018 aa19.15■□□□□ 0.66
SHKBP1-211ENST00000595945 RCAN3Q9UKA8 241 aa19.15■□□□□ 0.66
SHKBP1-211ENST00000595945 NKX1-1Q15270 411 aaPredicted RBP19.14■□□□□ 0.65
SHKBP1-211ENST00000595945 MEX3CQ5U5Q3 659 aaKnown RBP19.14■□□□□ 0.65
SHKBP1-211ENST00000595945 TNS2Q63HR2 1409 aa19.14■□□□□ 0.65
SHKBP1-211ENST00000595945 TOGARAM1Q9Y4F4 1720 aa19.14■□□□□ 0.65
SHKBP1-211ENST00000595945 HSP90AB1P08238 724 aaKnown RBP19.13■□□□□ 0.65
SHKBP1-211ENST00000595945 CT47B1P0C2W7 299 aaPredicted RBP19.13■□□□□ 0.65
SHKBP1-211ENST00000595945 EXOSC9Q06265 439 aaKnown RBP19.13■□□□□ 0.65
SHKBP1-211ENST00000595945 USP21Q9UK80 565 aa19.13■□□□□ 0.65
SHKBP1-211ENST00000595945 LAS1LQ9Y4W2 734 aaKnown RBP19.13■□□□□ 0.65
SHKBP1-211ENST00000595945 SUPT16HQ9Y5B9 1047 aaKnown RBP19.13■□□□□ 0.65
SHKBP1-211ENST00000595945 AFF2P51816 1311 aa19.13■□□□□ 0.65
SHKBP1-211ENST00000595945 ATRNO75882 1429 aa19.13■□□□□ 0.65
SHKBP1-211ENST00000595945 GLI3P10071 1580 aa19.13■□□□□ 0.65
SHKBP1-211ENST00000595945 THSD7AQ9UPZ6 1657 aa19.13■□□□□ 0.65
SHKBP1-211ENST00000595945 TAF7Q15545 349 aaPredicted RBP19.12■□□□□ 0.65
SHKBP1-211ENST00000595945 DCAF5Q96JK2 942 aa19.11■□□□□ 0.65
SHKBP1-211ENST00000595945 ITGB4P16144 1822 aa19.11■□□□□ 0.65
SHKBP1-211ENST00000595945 KAT6BQ8WYB5 2073 aa19.09■□□□□ 0.65
SHKBP1-211ENST00000595945 CACNA1FO60840 1977 aa19.09■□□□□ 0.65
SHKBP1-211ENST00000595945 TEFQ10587 303 aa19.08■□□□□ 0.64
SHKBP1-211ENST00000595945 SLC52A2Q9HAB3 445 aa19.08■□□□□ 0.64
SHKBP1-211ENST00000595945 TSPYL4Q9UJ04 414 aa19.08■□□□□ 0.64
SHKBP1-211ENST00000595945 CCDC9Q9Y3X0 531 aaKnown RBP19.08■□□□□ 0.64
SHKBP1-211ENST00000595945 PAPPAQ13219 1627 aa19.07■□□□□ 0.64
SHKBP1-211ENST00000595945 EXOC5O00471 708 aa19.07■□□□□ 0.64
SHKBP1-211ENST00000595945 RARSP54136 660 aaKnown RBP19.07■□□□□ 0.64
SHKBP1-211ENST00000595945 C8orf58Q8NAV2 365 aa19.07■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms