RNA–Protein interactions for RNA: ENST00000594828.7

LSM4-204, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, human

TSL 2

Gene LSM4, Length 807 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSM4-204	ENST00000594828	PANK3	Q9H999	370 aa		32.36	■■■□□ 2.77
LSM4-204	ENST00000594828	KAT6B	Q8WYB5	2073 aa		32.35	■■■□□ 2.77
LSM4-204	ENST00000594828	TAT	P17735	454 aa	Predicted RBP	32.34	■■■□□ 2.77
LSM4-204	ENST00000594828	STK32B	Q9NY57	414 aa		32.34	■■■□□ 2.77
LSM4-204	ENST00000594828	SPON1	Q9HCB6	807 aa		32.32	■■■□□ 2.76
LSM4-204	ENST00000594828	BTAF1	O14981	1849 aa		32.31	■■■□□ 2.76
LSM4-204	ENST00000594828	SLC15A2	Q16348	729 aa		32.31	■■■□□ 2.76
LSM4-204	ENST00000594828	SYTL4	Q96C24	671 aa	Predicted RBP	32.31	■■■□□ 2.76
LSM4-204	ENST00000594828	WASHC2A	Q641Q2	1341 aa		32.3	■■■□□ 2.76
LSM4-204	ENST00000594828	PRIM1	P49642	420 aa	Known RBP	32.3	■■■□□ 2.76
LSM4-204	ENST00000594828	POLK	Q9UBT6	870 aa		32.3	■■■□□ 2.76
LSM4-204	ENST00000594828	TNNT2	P45379	298 aa	Predicted RBP	32.29	■■■□□ 2.76
LSM4-204	ENST00000594828	SHANK3	Q9BYB0	1731 aa		32.26	■■■□□ 2.76
LSM4-204	ENST00000594828	MAP2	P11137	1827 aa	Known RBP	32.26	■■■□□ 2.76
LSM4-204	ENST00000594828	PDGFD	Q9GZP0	370 aa	Predicted RBP	32.26	■■■□□ 2.75
LSM4-204	ENST00000594828	ANKRD26	Q9UPS8	1709 aa		32.23	■■■□□ 2.75
LSM4-204	ENST00000594828	LRRC4B	Q9NT99	713 aa		32.23	■■■□□ 2.75
LSM4-204	ENST00000594828	PPP1R1B	Q9UD71	204 aa	Predicted RBP	32.23	■■■□□ 2.75
LSM4-204	ENST00000594828	PCDH11X	Q9BZA7	1347 aa		32.23	■■■□□ 2.75
LSM4-204	ENST00000594828	PCDH11Y	Q9BZA8	1340 aa		32.23	■■■□□ 2.75
LSM4-204	ENST00000594828	SLC27A3	Q5K4L6	730 aa		32.21	■■■□□ 2.75
LSM4-204	ENST00000594828	EYA1	Q99502	592 aa		32.21	■■■□□ 2.75
LSM4-204	ENST00000594828	NSD2	O96028	1365 aa		32.2	■■■□□ 2.75
LSM4-204	ENST00000594828	DOT1L	Q8TEK3	1739 aa		32.2	■■■□□ 2.75
LSM4-204	ENST00000594828	CASZ1	Q86V15	1759 aa		32.2	■■■□□ 2.75
LSM4-204	ENST00000594828	ZBTB7A	O95365	584 aa		32.19	■■■□□ 2.74
LSM4-204	ENST00000594828	KNSTRN	Q9Y448	316 aa		32.19	■■■□□ 2.74
LSM4-204	ENST00000594828	NCAPD2	Q15021	1401 aa		32.17	■■■□□ 2.74
LSM4-204	ENST00000594828	CYP27B1	O15528	508 aa		32.16	■■■□□ 2.74
LSM4-204	ENST00000594828	MORC1	Q86VD1	984 aa		32.16	■■■□□ 2.74
LSM4-204	ENST00000594828	KIF7	Q2M1P5	1343 aa		32.16	■■■□□ 2.74
LSM4-204	ENST00000594828	PAPPA	Q13219	1627 aa		32.15	■■■□□ 2.74
LSM4-204	ENST00000594828	EIF4A2	Q14240	407 aa	Known RBP	32.15	■■■□□ 2.74
LSM4-204	ENST00000594828	SPG7	Q9UQ90	795 aa		32.15	■■■□□ 2.74
LSM4-204	ENST00000594828	ZNF827	Q17R98	1081 aa		32.14	■■■□□ 2.74
LSM4-204	ENST00000594828	ATF5	Q9Y2D1	282 aa	Predicted RBP	32.14	■■■□□ 2.74
LSM4-204	ENST00000594828	KCNQ4	P56696	695 aa		32.13	■■■□□ 2.73
LSM4-204	ENST00000594828	AKT1S1	Q96B36	256 aa		32.11	■■■□□ 2.73
LSM4-204	ENST00000594828	MTFR1L	Q9H019	292 aa		32.11	■■■□□ 2.73
LSM4-204	ENST00000594828	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	32.1	■■■□□ 2.73
LSM4-204	ENST00000594828	PTGER2	P43116	358 aa		32.09	■■■□□ 2.73
LSM4-204	ENST00000594828	MPRIP	Q6WCQ1	1025 aa		32.09	■■■□□ 2.73
LSM4-204	ENST00000594828	CCNL1	Q9UK58	526 aa	Predicted RBP	32.09	■■■□□ 2.73
LSM4-204	ENST00000594828	PKD1L3	Q7Z443	1732 aa		32.09	■■■□□ 2.73
LSM4-204	ENST00000594828	LY75	O60449	1722 aa		32.07	■■■□□ 2.72
LSM4-204	ENST00000594828	NKX1-1	Q15270	411 aa	Predicted RBP	32.07	■■■□□ 2.72
LSM4-204	ENST00000594828	AMER1	Q5JTC6	1135 aa	Predicted RBP	32.05	■■■□□ 2.72
LSM4-204	ENST00000594828	TFCP2L1	Q9NZI6	479 aa		32.05	■■■□□ 2.72
LSM4-204	ENST00000594828	IGSF1	Q8N6C5	1336 aa		32.03	■■■□□ 2.72
LSM4-204	ENST00000594828	IFNL2	Q8IZJ0	200 aa		32.03	■■■□□ 2.72
LSM4-204	ENST00000594828	PHKG2	P15735	406 aa		32	■■■□□ 2.71
LSM4-204	ENST00000594828	SGIP1	Q9BQI5	828 aa		32	■■■□□ 2.71
LSM4-204	ENST00000594828	PNPLA7	Q6ZV29	1317 aa		32	■■■□□ 2.71
LSM4-204	ENST00000594828	PALLD	Q8WX93	1383 aa		31.99	■■■□□ 2.71
LSM4-204	ENST00000594828	PER1	O15534	1290 aa	Predicted RBP	31.99	■■■□□ 2.71
LSM4-204	ENST00000594828	SLC16A10	Q8TF71	515 aa		31.99	■■■□□ 2.71
LSM4-204	ENST00000594828	PIGB	Q92521	554 aa		31.99	■■■□□ 2.71
LSM4-204	ENST00000594828	SMARCC1	Q92922	1105 aa	Predicted RBP	31.99	■■■□□ 2.71
LSM4-204	ENST00000594828	TOGARAM1	Q9Y4F4	1720 aa		31.98	■■■□□ 2.71
LSM4-204	ENST00000594828	PLEKHG2	Q9H7P9	1386 aa		31.98	■■■□□ 2.71
LSM4-204	ENST00000594828	HMGB2	P26583	209 aa	Known RBP	31.98	■■■□□ 2.71
LSM4-204	ENST00000594828	ITGB4	P16144	1822 aa		31.96	■■■□□ 2.71
LSM4-204	ENST00000594828	DCAF8L1	A6NGE4	600 aa		31.96	■■■□□ 2.71
LSM4-204	ENST00000594828	PLEKHO1	Q53GL0	409 aa	Predicted RBP	31.95	■■■□□ 2.71
LSM4-204	ENST00000594828	TMOD3	Q9NYL9	352 aa		31.95	■■■□□ 2.71
LSM4-204	ENST00000594828	QSER1	Q2KHR3	1735 aa		31.95	■■■□□ 2.7
LSM4-204	ENST00000594828	ARX	Q96QS3	562 aa		31.93	■■■□□ 2.7
LSM4-204	ENST00000594828	FHDC1	Q9C0D6	1143 aa	Predicted RBP	31.93	■■■□□ 2.7
LSM4-204	ENST00000594828	CC2D1B	Q5T0F9	858 aa	Known RBP	31.92	■■■□□ 2.7
LSM4-204	ENST00000594828	IL13	P35225	146 aa		31.91	■■■□□ 2.7
LSM4-204	ENST00000594828	AMOT	Q4VCS5	1084 aa		31.91	■■■□□ 2.7
LSM4-204	ENST00000594828	AEBP1	Q8IUX7	1158 aa		31.91	■■■□□ 2.7
LSM4-204	ENST00000594828	SYT17	Q9BSW7	474 aa		31.91	■■■□□ 2.7
LSM4-204	ENST00000594828	MTHFS	P49914	203 aa		31.9	■■■□□ 2.7
LSM4-204	ENST00000594828	SULT6B1	Q6IMI4	303 aa		31.9	■■■□□ 2.7
LSM4-204	ENST00000594828	MSH5	O43196	834 aa		31.89	■■■□□ 2.7
LSM4-204	ENST00000594828	HSP90AB1	P08238	724 aa	Known RBP	31.89	■■■□□ 2.7
LSM4-204	ENST00000594828	TUBGCP6	Q96RT7	1819 aa		31.89	■■■□□ 2.69
LSM4-204	ENST00000594828	POLD1	P28340	1107 aa		31.88	■■■□□ 2.69
LSM4-204	ENST00000594828	COL23A1	Q86Y22	540 aa	Predicted RBP	31.88	■■■□□ 2.69
LSM4-204	ENST00000594828	ZNF530	Q6P9A1	599 aa	Predicted RBP	31.87	■■■□□ 2.69
LSM4-204	ENST00000594828	ASAP1	Q9ULH1	1129 aa		31.87	■■■□□ 2.69
LSM4-204	ENST00000594828	C5	P01031	1676 aa		31.86	■■■□□ 2.69
LSM4-204	ENST00000594828	DCAF5	Q96JK2	942 aa		31.86	■■■□□ 2.69
LSM4-204	ENST00000594828	LOC102724428	A0A0B4J2F2	783 aa		31.85	■■■□□ 2.69
LSM4-204	ENST00000594828	ERVV-2	B6SEH9	535 aa		31.85	■■■□□ 2.69
LSM4-204	ENST00000594828	SIK1	P57059	783 aa		31.85	■■■□□ 2.69
LSM4-204	ENST00000594828	FLAD1	Q8NFF5	587 aa		31.83	■■■□□ 2.69
LSM4-204	ENST00000594828	KDR	P35968	1356 aa		31.82	■■■□□ 2.69
LSM4-204	ENST00000594828	TAF1L	Q8IZX4	1826 aa		31.82	■■■□□ 2.68
LSM4-204	ENST00000594828	CNGB1	Q14028	1251 aa	Predicted RBP	31.82	■■■□□ 2.68
LSM4-204	ENST00000594828	C1orf141	Q5JVX7	400 aa		31.82	■■■□□ 2.68
LSM4-204	ENST00000594828	AK7	Q96M32	723 aa		31.82	■■■□□ 2.68
LSM4-204	ENST00000594828	ATG3	Q9NT62	314 aa		31.82	■■■□□ 2.68
LSM4-204	ENST00000594828	NPC1L1	Q9UHC9	1359 aa		31.81	■■■□□ 2.68
LSM4-204	ENST00000594828	ATP6V1A	P38606	617 aa		31.79	■■■□□ 2.68
LSM4-204	ENST00000594828	MAP3K5	Q99683	1374 aa		31.79	■■■□□ 2.68
LSM4-204	ENST00000594828	C4B	P0C0L5	1744 aa		31.78	■■■□□ 2.68
LSM4-204	ENST00000594828	CABP4	P57796	275 aa		31.78	■■■□□ 2.68
LSM4-204	ENST00000594828	COL24A1	Q17RW2	1714 aa		31.78	■■■□□ 2.68

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