RNA–Protein interactions for RNA: ENST00000592822.1

TPM4-216, Transcript of tropomyosin 4, humanhuman

TSL 5

Gene TPM4, Length 262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4-216ENST00000592822 TATP17735 454 aaPredicted RBP13.35□□□□□ -0.27
TPM4-216ENST00000592822 MARCH10Q8NA82 808 aaPredicted RBP13.35□□□□□ -0.27
TPM4-216ENST00000592822 ZCRB1Q8TBF4 217 aaKnown RBP13.35□□□□□ -0.27
TPM4-216ENST00000592822 PKD1L3Q7Z443 1732 aa13.35□□□□□ -0.27
TPM4-216ENST00000592822 ANP32CO43423 234 aa13.34□□□□□ -0.27
TPM4-216ENST00000592822 HMOX1P09601 288 aa13.34□□□□□ -0.27
TPM4-216ENST00000592822 NUDCQ9Y266 331 aa13.33□□□□□ -0.28
TPM4-216ENST00000592822 DDX54Q8TDD1 881 aaKnown RBP13.32□□□□□ -0.28
TPM4-216ENST00000592822 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.32□□□□□ -0.284e-9■■□□□ 14.4
TPM4-216ENST00000592822 SBF2Q86WG5 1849 aa13.32□□□□□ -0.28
TPM4-216ENST00000592822 PLEKHG2Q9H7P9 1386 aa13.32□□□□□ -0.28
TPM4-216ENST00000592822 U2AF1L5P0DN76 240 aaPredicted RBP13.31□□□□□ -0.28
TPM4-216ENST00000592822 U2AF1Q01081 240 aaKnown RBP eCLIP13.31□□□□□ -0.28
TPM4-216ENST00000592822 FAM196AQ6ZSG2 479 aa13.31□□□□□ -0.28
TPM4-216ENST00000592822 SPG7Q9UQ90 795 aa13.31□□□□□ -0.28
TPM4-216ENST00000592822 BCL9O00512 1426 aa13.3□□□□□ -0.28
TPM4-216ENST00000592822 SOCS7O14512 581 aa13.3□□□□□ -0.28
TPM4-216ENST00000592822 CYP27B1O15528 508 aa13.3□□□□□ -0.28
TPM4-216ENST00000592822 CCDC184Q52MB2 194 aa13.3□□□□□ -0.28
TPM4-216ENST00000592822 UPF1Q92900 1129 aaKnown RBP eCLIP13.3□□□□□ -0.28
TPM4-216ENST00000592822 RSPH6AQ9H0K4 717 aa13.3□□□□□ -0.28
TPM4-216ENST00000592822 PCDH11XQ9BZA7 1347 aa13.3□□□□□ -0.28
TPM4-216ENST00000592822 PCDH11YQ9BZA8 1340 aa13.3□□□□□ -0.28
TPM4-216ENST00000592822 PLEKHO1Q53GL0 409 aaPredicted RBP13.29□□□□□ -0.28
TPM4-216ENST00000592822 FCHSD2O94868 740 aa13.28□□□□□ -0.28
TPM4-216ENST00000592822 AMOTQ4VCS5 1084 aa13.28□□□□□ -0.28
TPM4-216ENST00000592822 TRIM37O94972 964 aa13.27□□□□□ -0.29
TPM4-216ENST00000592822 PHKG2P15735 406 aa13.27□□□□□ -0.29
TPM4-216ENST00000592822 PRKAR2BP31323 418 aa13.27□□□□□ -0.29
TPM4-216ENST00000592822 TNS1Q9HBL0 1735 aaKnown RBP13.27□□□□□ -0.29
TPM4-216ENST00000592822 NKX1-1Q15270 411 aaPredicted RBP13.26□□□□□ -0.29
TPM4-216ENST00000592822 MTHFSDQ2M296 383 aaKnown RBP13.26□□□□□ -0.29
TPM4-216ENST00000592822 ZNF530Q6P9A1 599 aaPredicted RBP13.26□□□□□ -0.29
TPM4-216ENST00000592822 NHSQ6T4R5 1651 aa13.26□□□□□ -0.29
TPM4-216ENST00000592822 PTF1AQ7RTS3 328 aa13.26□□□□□ -0.29
TPM4-216ENST00000592822 IFNL2Q8IZJ0 200 aa13.26□□□□□ -0.29
TPM4-216ENST00000592822 DOT1LQ8TEK3 1739 aa13.26□□□□□ -0.29
TPM4-216ENST00000592822 KAT6BQ8WYB5 2073 aa13.26□□□□□ -0.29
TPM4-216ENST00000592822 PHACTR3Q96KR7 559 aa13.26□□□□□ -0.29
TPM4-216ENST00000592822 TOGARAM1Q9Y4F4 1720 aa13.25□□□□□ -0.29
TPM4-216ENST00000592822 KCNQ2O43526 872 aa13.25□□□□□ -0.29
TPM4-216ENST00000592822 DIEXFQ68CQ4 756 aaKnown RBP13.25□□□□□ -0.29
TPM4-216ENST00000592822 CCDC125Q86Z20 511 aa13.25□□□□□ -0.29
TPM4-216ENST00000592822 ACSBG1Q96GR2 724 aa13.25□□□□□ -0.29
TPM4-216ENST00000592822 PLEKHF1Q96S99 279 aa13.24□□□□□ -0.29
TPM4-216ENST00000592822 BCL11BQ9C0K0 894 aaPredicted RBP13.24□□□□□ -0.29
TPM4-216ENST00000592822 MRS2Q9HD23 443 aa13.24□□□□□ -0.29
TPM4-216ENST00000592822 ADAMTS8Q9UP79 889 aa13.24□□□□□ -0.29
TPM4-216ENST00000592822 ITGB4P16144 1822 aa13.23□□□□□ -0.29
TPM4-216ENST00000592822 PRIM1P49642 420 aaKnown RBP13.23□□□□□ -0.29
TPM4-216ENST00000592822 WDR43Q15061 677 aaKnown RBP eCLIP13.23□□□□□ -0.29
TPM4-216ENST00000592822 BTAF1O14981 1849 aa13.23□□□□□ -0.29
TPM4-216ENST00000592822 VIRMAQ69YN4 1812 aaKnown RBP13.23□□□□□ -0.29
TPM4-216ENST00000592822 KDM6AO15550 1401 aaPredicted RBP13.22□□□□□ -0.29
TPM4-216ENST00000592822 AKAP4Q5JQC9 854 aa13.22□□□□□ -0.29
TPM4-216ENST00000592822 C1orf141Q5JVX7 400 aa13.22□□□□□ -0.29
TPM4-216ENST00000592822 GAS2L2Q8NHY3 880 aa13.22□□□□□ -0.29
TPM4-216ENST00000592822 PNISRQ8TF01 805 aaKnown RBP13.22□□□□□ -0.29
TPM4-216ENST00000592822 SCN11AQ9UI33 1791 aa13.22□□□□□ -0.29
TPM4-216ENST00000592822 HSP90AB1P08238 724 aaKnown RBP13.21□□□□□ -0.29
TPM4-216ENST00000592822 MPRIPQ6WCQ1 1025 aa13.21□□□□□ -0.29
TPM4-216ENST00000592822 DCAF5Q96JK2 942 aa13.21□□□□□ -0.29
TPM4-216ENST00000592822 PNNQ9H307 717 aaKnown RBP13.21□□□□□ -0.29
TPM4-216ENST00000592822 ADAMTS7Q9UKP4 1686 aa13.21□□□□□ -0.3
TPM4-216ENST00000592822 DLG5Q8TDM6 1919 aa13.2□□□□□ -0.3
TPM4-216ENST00000592822 APBA3O96018 575 aa13.2□□□□□ -0.3
TPM4-216ENST00000592822 SF3B2Q13435 895 aaKnown RBP13.2□□□□□ -0.3
TPM4-216ENST00000592822 DEFB132Q7Z7B7 95 aa13.2□□□□□ -0.3
TPM4-216ENST00000592822 CCDC146Q8IYE0 955 aa13.2□□□□□ -0.3
TPM4-216ENST00000592822 SYTL4Q96C24 671 aaPredicted RBP13.2□□□□□ -0.3
TPM4-216ENST00000592822 MAP3K5Q99683 1374 aa13.2□□□□□ -0.3
TPM4-216ENST00000592822 GNAT3A8MTJ3 354 aa13.19□□□□□ -0.3
TPM4-216ENST00000592822 LGR6Q9HBX8 967 aa13.19□□□□□ -0.3
TPM4-216ENST00000592822 MAPK8IP3Q9UPT6 1336 aa13.18□□□□□ -0.3
TPM4-216ENST00000592822 ERVV-2B6SEH9 535 aa13.18□□□□□ -0.3
TPM4-216ENST00000592822 NEFMP07197 916 aa13.18□□□□□ -0.3
TPM4-216ENST00000592822 BAG6P46379 1132 aa13.18□□□□□ -0.3
TPM4-216ENST00000592822 EN1Q05925 392 aaPredicted RBP13.18□□□□□ -0.3
TPM4-216ENST00000592822 MIER1Q8N108 512 aa13.18□□□□□ -0.3
TPM4-216ENST00000592822 RNMTO43148 476 aaKnown RBP13.17□□□□□ -0.3
TPM4-216ENST00000592822 NFE2L2Q16236 605 aa13.17□□□□□ -0.3
TPM4-216ENST00000592822 IL17REQ8NFR9 667 aa13.17□□□□□ -0.3
TPM4-216ENST00000592822 PIGBQ92521 554 aa13.17□□□□□ -0.3
TPM4-216ENST00000592822 RUNDC1Q96C34 613 aa13.17□□□□□ -0.3
TPM4-216ENST00000592822 CAMKK2Q96RR4 588 aa13.17□□□□□ -0.3
TPM4-216ENST00000592822 RGPD3A6NKT7 1758 aaPredicted RBP13.17□□□□□ -0.3
TPM4-216ENST00000592822 RGPD4Q7Z3J3 1758 aa13.17□□□□□ -0.3
TPM4-216ENST00000592822 CCER2I3L3R5 266 aa13.16□□□□□ -0.3
TPM4-216ENST00000592822 PLSCR1O15162 318 aa13.16□□□□□ -0.3
TPM4-216ENST00000592822 CABP4P57796 275 aa13.16□□□□□ -0.3
TPM4-216ENST00000592822 TMOD3Q9NYL9 352 aa13.16□□□□□ -0.3
TPM4-216ENST00000592822 MRC1P22897 1456 aa13.16□□□□□ -0.3
TPM4-216ENST00000592822 TMPOP42166 694 aaKnown RBP13.15□□□□□ -0.3
TPM4-216ENST00000592822 EZH2Q15910 746 aaKnown RBP13.15□□□□□ -0.3
TPM4-216ENST00000592822 NFATC2IPQ8NCF5 419 aa13.15□□□□□ -0.3
TPM4-216ENST00000592822 LY75O60449 1722 aa13.15□□□□□ -0.3
TPM4-216ENST00000592822 CEMIPQ8WUJ3 1361 aa13.15□□□□□ -0.3
TPM4-216ENST00000592822 RREB1Q92766 1687 aa13.15□□□□□ -0.31
TPM4-216ENST00000592822 SIPA1L3O60292 1781 aaPredicted RBP13.15□□□□□ -0.31
TPM4-216ENST00000592822 HTATSF1O43719 755 aaKnown RBP13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms