RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 LMOD2Q6P5Q4 547 aa18.12■□□□□ 0.49
LIG3-205ENST00000585941 LTV1Q96GA3 475 aaPredicted RBP18.12■□□□□ 0.49
LIG3-205ENST00000585941 DDX19BQ9UMR2 479 aa18.12■□□□□ 0.49
LIG3-205ENST00000585941 MCM10Q7L590 875 aa18.12■□□□□ 0.49
LIG3-205ENST00000585941 LRRC37A3O60309 1634 aa18.11■□□□□ 0.49
LIG3-205ENST00000585941 GNAT3A8MTJ3 354 aa18.11■□□□□ 0.49
LIG3-205ENST00000585941 AEBP2Q6ZN18 517 aaPredicted RBP18.11■□□□□ 0.49
LIG3-205ENST00000585941 CHMP4BQ9H444 224 aaKnown RBP18.11■□□□□ 0.49
LIG3-205ENST00000585941 MRPL50Q8N5N7 158 aaKnown RBP18.1■□□□□ 0.49
LIG3-205ENST00000585941 BABAM1Q9NWV8 329 aa18.1■□□□□ 0.49
LIG3-205ENST00000585941 MAP3K5Q99683 1374 aa18.1■□□□□ 0.49
LIG3-205ENST00000585941 NCAPD2Q15021 1401 aa18.1■□□□□ 0.49
LIG3-205ENST00000585941 TSPYL6Q8N831 410 aa18.09■□□□□ 0.49
LIG3-205ENST00000585941 C8orf58Q8NAV2 365 aa18.09■□□□□ 0.49
LIG3-205ENST00000585941 ABCC6O95255 1503 aa18.09■□□□□ 0.49
LIG3-205ENST00000585941 TNNQ9UQP3 1299 aa18.09■□□□□ 0.49
LIG3-205ENST00000585941 CAMTA1Q9Y6Y1 1673 aa18.08■□□□□ 0.49
LIG3-205ENST00000585941 TNS3Q68CZ2 1445 aa18.08■□□□□ 0.49
LIG3-205ENST00000585941 PXDNQ92626 1479 aa18.07■□□□□ 0.48
LIG3-205ENST00000585941 MED1Q15648 1581 aaPredicted RBP18.07■□□□□ 0.48
LIG3-205ENST00000585941 NBPF6Q5VWK0 638 aa18.07■□□□□ 0.48
LIG3-205ENST00000585941 NBPF4Q96M43 638 aa18.07■□□□□ 0.48
LIG3-205ENST00000585941 RGPD2P0DJD1 1756 aa18.07■□□□□ 0.48
LIG3-205ENST00000585941 ZBTB7CA1YPR0 619 aa18.06■□□□□ 0.48
LIG3-205ENST00000585941 RWDD1Q9H446 243 aaPredicted RBP18.06■□□□□ 0.48
LIG3-205ENST00000585941 SOS1Q07889 1333 aaPredicted RBP18.06■□□□□ 0.48
LIG3-205ENST00000585941 ITPRIPQ8IWB1 547 aa18.06■□□□□ 0.48
LIG3-205ENST00000585941 API5Q9BZZ5 524 aaKnown RBP18.06■□□□□ 0.48
LIG3-205ENST00000585941 ELL2O00472 640 aaPredicted RBP18.05■□□□□ 0.48
LIG3-205ENST00000585941 AMOTQ4VCS5 1084 aa18.05■□□□□ 0.48
LIG3-205ENST00000585941 ANKRD24Q8TF21 1146 aa18.05■□□□□ 0.48
LIG3-205ENST00000585941 TSPYL4Q9UJ04 414 aa18.05■□□□□ 0.48
LIG3-205ENST00000585941 SPATA31A3Q5VYP0 1347 aa18.04■□□□□ 0.48
LIG3-205ENST00000585941 PLEKHO1Q53GL0 409 aaPredicted RBP18.04■□□□□ 0.48
LIG3-205ENST00000585941 IGHDP01880 384 aa18.03■□□□□ 0.48
LIG3-205ENST00000585941 TMEM57Q8N5G2 664 aa18.03■□□□□ 0.48
LIG3-205ENST00000585941 USHBP1Q8N6Y0 703 aa18.03■□□□□ 0.48
LIG3-205ENST00000585941 LMO7Q8WWI1 1683 aa18.03■□□□□ 0.48
LIG3-205ENST00000585941 FAM208AQ9UK61 1670 aaKnown RBP18.03■□□□□ 0.48
LIG3-205ENST00000585941 CRYBG1Q9Y4K1 1723 aa18.03■□□□□ 0.48
LIG3-205ENST00000585941 ZNF335Q9H4Z2 1342 aaPredicted RBP18.03■□□□□ 0.48
LIG3-205ENST00000585941 PCDHB15Q9Y5E8 787 aa18.03■□□□□ 0.48
LIG3-205ENST00000585941 PLEKHG2Q9H7P9 1386 aa18.02■□□□□ 0.48
LIG3-205ENST00000585941 TAF7Q15545 349 aaPredicted RBP18.02■□□□□ 0.47
LIG3-205ENST00000585941 BRINP3Q76B58 766 aa18.02■□□□□ 0.47
LIG3-205ENST00000585941 RGPD5Q99666 1765 aa18.02■□□□□ 0.47
LIG3-205ENST00000585941 CACNA1FO60840 1977 aa18.01■□□□□ 0.47
LIG3-205ENST00000585941 ABCC4O15439 1325 aa18.01■□□□□ 0.47
LIG3-205ENST00000585941 ZBTB40Q9NUA8 1239 aa18.01■□□□□ 0.47
LIG3-205ENST00000585941 CEMIPQ8WUJ3 1361 aa18.01■□□□□ 0.47
LIG3-205ENST00000585941 COL18A1P39060 1754 aa18.01■□□□□ 0.47
LIG3-205ENST00000585941 PTPRCP08575 1304 aa18■□□□□ 0.47
LIG3-205ENST00000585941 AKAP4Q5JQC9 854 aa18■□□□□ 0.47
LIG3-205ENST00000585941 IL17REQ8NFR9 667 aa18■□□□□ 0.47
LIG3-205ENST00000585941 LRRC59Q96AG4 307 aaKnown RBP18■□□□□ 0.47
LIG3-205ENST00000585941 SLAIN2Q9P270 581 aa18■□□□□ 0.47
LIG3-205ENST00000585941 OVOS2A0A0G2JMS6 1433 aa18■□□□□ 0.47
LIG3-205ENST00000585941 CPDO75976 1380 aa18■□□□□ 0.47
LIG3-205ENST00000585941 ERBB3P21860 1342 aa18■□□□□ 0.47
LIG3-205ENST00000585941 HDAC1Q13547 482 aaPredicted RBP17.99■□□□□ 0.47
LIG3-205ENST00000585941 ZC3H6P61129 1189 aaKnown RBP17.99■□□□□ 0.47
LIG3-205ENST00000585941 CHMP4AQ9BY43 222 aa17.99■□□□□ 0.47
LIG3-205ENST00000585941 AXIN2Q9Y2T1 843 aa17.99■□□□□ 0.47
LIG3-205ENST00000585941 PDE4AP27815 886 aa17.98■□□□□ 0.47
LIG3-205ENST00000585941 DDX17Q92841 729 aaKnown RBP17.98■□□□□ 0.47
LIG3-205ENST00000585941 BACH2Q9BYV9 841 aa17.97■□□□□ 0.47
LIG3-205ENST00000585941 SOS2Q07890 1332 aaPredicted RBP17.97■□□□□ 0.47
LIG3-205ENST00000585941 C1orf141Q5JVX7 400 aa17.96■□□□□ 0.47
LIG3-205ENST00000585941 ZNF530Q6P9A1 599 aaPredicted RBP17.96■□□□□ 0.47
LIG3-205ENST00000585941 PLEKHG5O94827 1062 aa17.96■□□□□ 0.47
LIG3-205ENST00000585941 KRT24Q2M2I5 525 aa17.96■□□□□ 0.47
LIG3-205ENST00000585941 MIS18AQ9NYP9 233 aa17.96■□□□□ 0.47
LIG3-205ENST00000585941 VIRMAQ69YN4 1812 aaKnown RBP17.95■□□□□ 0.46
LIG3-205ENST00000585941 ZBTB7BO15156 539 aaPredicted RBP17.95■□□□□ 0.46
LIG3-205ENST00000585941 STK31Q9BXU1 1019 aa17.95■□□□□ 0.46
LIG3-205ENST00000585941 CCDC30Q5VVM6 783 aa17.94■□□□□ 0.46
LIG3-205ENST00000585941 INTS3Q68E01 1043 aaKnown RBP17.94■□□□□ 0.46
LIG3-205ENST00000585941 KDM3BQ7LBC6 1761 aa17.94■□□□□ 0.46
LIG3-205ENST00000585941 RAPGEF4Q8WZA2 1011 aa17.93■□□□□ 0.46
LIG3-205ENST00000585941 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.93■□□□□ 0.464e-6■□□□□ 11.2
LIG3-205ENST00000585941 NHSL1Q5SYE7 1610 aa17.93■□□□□ 0.46
LIG3-205ENST00000585941 SLC4A2P04920 1241 aa17.93■□□□□ 0.46
LIG3-205ENST00000585941 HOXB7P09629 217 aa17.93■□□□□ 0.46
LIG3-205ENST00000585941 TEFQ10587 303 aa17.93■□□□□ 0.46
LIG3-205ENST00000585941 RGS3P49796 1198 aa17.92■□□□□ 0.46
LIG3-205ENST00000585941 ADAMTS7Q9UKP4 1686 aa17.92■□□□□ 0.46
LIG3-205ENST00000585941 FAM161AQ3B820 660 aa17.91■□□□□ 0.46
LIG3-205ENST00000585941 CABLES1Q8TDN4 633 aa17.91■□□□□ 0.46
LIG3-205ENST00000585941 NLRP2Q9NX02 1062 aa17.91■□□□□ 0.46
LIG3-205ENST00000585941 RGS12O14924 1447 aa17.91■□□□□ 0.46
LIG3-205ENST00000585941 SKAP1Q86WV1 359 aa17.9■□□□□ 0.46
LIG3-205ENST00000585941 SMC5Q8IY18 1101 aa17.9■□□□□ 0.46
LIG3-205ENST00000585941 RNMTO43148 476 aaKnown RBP17.9■□□□□ 0.46
LIG3-205ENST00000585941 CSB-PGBD3P0DP91 1061 aa17.9■□□□□ 0.46
LIG3-205ENST00000585941 TATP17735 454 aaPredicted RBP17.9■□□□□ 0.46
LIG3-205ENST00000585941 ANP32AP39687 249 aaKnown RBP17.9■□□□□ 0.46
LIG3-205ENST00000585941 PDZRN3Q9UPQ7 1066 aa17.9■□□□□ 0.46
LIG3-205ENST00000585941 SPG7Q9UQ90 795 aa17.9■□□□□ 0.46
LIG3-205ENST00000585941 LGR6Q9HBX8 967 aa17.89■□□□□ 0.45
LIG3-205ENST00000585941 ABCA3Q99758 1704 aa17.88■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 72.2 ms