RNA–Protein interactions for RNA: ENST00000585229.1

SMCHD1-212, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 4

Gene SMCHD1, Length 555 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-212ENST00000585229 GCP02774 474 aa13.23□□□□□ -0.29
SMCHD1-212ENST00000585229 FBLN1P23142 703 aa13.23□□□□□ -0.29
SMCHD1-212ENST00000585229 RRS1Q15050 365 aaKnown RBP13.23□□□□□ -0.29
SMCHD1-212ENST00000585229 BLMP54132 1417 aaPredicted RBP13.22□□□□□ -0.29
SMCHD1-212ENST00000585229 LRRC59Q96AG4 307 aaKnown RBP13.22□□□□□ -0.29
SMCHD1-212ENST00000585229 LMO7Q8WWI1 1683 aa13.21□□□□□ -0.29
SMCHD1-212ENST00000585229 CAMTA1Q9Y6Y1 1673 aa13.21□□□□□ -0.29
SMCHD1-212ENST00000585229 ARHGEF25Q86VW2 580 aa13.21□□□□□ -0.29
SMCHD1-212ENST00000585229 POTEFA5A3E0 1075 aa13.2□□□□□ -0.3
SMCHD1-212ENST00000585229 PLCB2Q00722 1185 aa13.2□□□□□ -0.3
SMCHD1-212ENST00000585229 LMOD2Q6P5Q4 547 aa13.2□□□□□ -0.3
SMCHD1-212ENST00000585229 BBXQ8WY36 941 aaPredicted RBP13.2□□□□□ -0.3
SMCHD1-212ENST00000585229 FAM208AQ9UK61 1670 aaKnown RBP13.2□□□□□ -0.3
SMCHD1-212ENST00000585229 RGPD5Q99666 1765 aa13.2□□□□□ -0.3
SMCHD1-212ENST00000585229 HOXC9P31274 260 aa13.19□□□□□ -0.3
SMCHD1-212ENST00000585229 IP6K1Q92551 441 aa13.19□□□□□ -0.3
SMCHD1-212ENST00000585229 DIAPH1O60610 1272 aaKnown RBP13.18□□□□□ -0.3
SMCHD1-212ENST00000585229 IL13P35225 146 aa13.18□□□□□ -0.3
SMCHD1-212ENST00000585229 PIP4K2BP78356 416 aa13.18□□□□□ -0.3
SMCHD1-212ENST00000585229 NCAPD2Q15021 1401 aa13.17□□□□□ -0.3
SMCHD1-212ENST00000585229 IRX5P78411 483 aaPredicted RBP13.17□□□□□ -0.3
SMCHD1-212ENST00000585229 GOLGA2Q08379 1002 aa13.17□□□□□ -0.3
SMCHD1-212ENST00000585229 WDR43Q15061 677 aaKnown RBP eCLIP13.17□□□□□ -0.3
SMCHD1-212ENST00000585229 IER5LQ5T953 404 aa13.17□□□□□ -0.3
SMCHD1-212ENST00000585229 ILDR1Q86SU0 546 aaPredicted RBP13.17□□□□□ -0.3
SMCHD1-212ENST00000585229 FAM9BQ8IZU0 186 aa13.17□□□□□ -0.3
SMCHD1-212ENST00000585229 SLC39A7Q92504 469 aa13.17□□□□□ -0.3
SMCHD1-212ENST00000585229 MFRPQ9BY79 579 aa13.17□□□□□ -0.3
SMCHD1-212ENST00000585229 METRNQ9UJH8 293 aa13.17□□□□□ -0.3
SMCHD1-212ENST00000585229 COL14A1Q05707 1796 aaKnown RBP13.17□□□□□ -0.3
SMCHD1-212ENST00000585229 SOX12O15370 315 aa13.16□□□□□ -0.3
SMCHD1-212ENST00000585229 AMPHP49418 695 aa13.16□□□□□ -0.3
SMCHD1-212ENST00000585229 EIF4A2Q14240 407 aaKnown RBP13.16□□□□□ -0.3
SMCHD1-212ENST00000585229 ADAMTS8Q9UP79 889 aa13.16□□□□□ -0.3
SMCHD1-212ENST00000585229 COLQQ9Y215 455 aaPredicted RBP13.16□□□□□ -0.3
SMCHD1-212ENST00000585229 NUDCQ9Y266 331 aa13.16□□□□□ -0.3
SMCHD1-212ENST00000585229 RGPD2P0DJD1 1756 aa13.15□□□□□ -0.3
SMCHD1-212ENST00000585229 PPM1GO15355 546 aaPredicted RBP13.15□□□□□ -0.3
SMCHD1-212ENST00000585229 MKRN3Q13064 507 aaKnown RBP13.15□□□□□ -0.3
SMCHD1-212ENST00000585229 HSP90AB2PQ58FF8 381 aa13.15□□□□□ -0.3
SMCHD1-212ENST00000585229 CABLES1Q8TDN4 633 aa13.15□□□□□ -0.3
SMCHD1-212ENST00000585229 KIAA0232Q92628 1395 aa13.15□□□□□ -0.3
SMCHD1-212ENST00000585229 JCADQ9P266 1359 aa13.15□□□□□ -0.3
SMCHD1-212ENST00000585229 KDRP35968 1356 aa13.14□□□□□ -0.31
SMCHD1-212ENST00000585229 IGSF1Q8N6C5 1336 aa13.13□□□□□ -0.31
SMCHD1-212ENST00000585229 PLCH1Q4KWH8 1693 aa13.13□□□□□ -0.31
SMCHD1-212ENST00000585229 C7P10643 843 aa13.13□□□□□ -0.31
SMCHD1-212ENST00000585229 FBXO22Q8NEZ5 403 aa13.13□□□□□ -0.31
SMCHD1-212ENST00000585229 MS4A4AQ96JQ5 239 aa13.13□□□□□ -0.31
SMCHD1-212ENST00000585229 ZC3H6P61129 1189 aaKnown RBP13.12□□□□□ -0.31
SMCHD1-212ENST00000585229 PDCD7Q8N8D1 485 aaKnown RBP13.12□□□□□ -0.31
SMCHD1-212ENST00000585229 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.12□□□□□ -0.31
SMCHD1-212ENST00000585229 NRAPQ86VF7 1730 aa13.12□□□□□ -0.31
SMCHD1-212ENST00000585229 NWD2Q9ULI1 1742 aa13.12□□□□□ -0.31
SMCHD1-212ENST00000585229 U2AF1L5P0DN76 240 aaPredicted RBP13.11□□□□□ -0.31
SMCHD1-212ENST00000585229 U2AF1Q01081 240 aaKnown RBP eCLIP13.11□□□□□ -0.31
SMCHD1-212ENST00000585229 RSPH6AQ9H0K4 717 aa13.11□□□□□ -0.31
SMCHD1-212ENST00000585229 AXIN2Q9Y2T1 843 aa13.11□□□□□ -0.31
SMCHD1-212ENST00000585229 ERBB3P21860 1342 aa13.11□□□□□ -0.31
SMCHD1-212ENST00000585229 COL5A2P05997 1499 aaPredicted RBP13.1□□□□□ -0.31
SMCHD1-212ENST00000585229 U2SURPO15042 1029 aaKnown RBP13.1□□□□□ -0.31
SMCHD1-212ENST00000585229 FCHSD2O94868 740 aa13.1□□□□□ -0.31
SMCHD1-212ENST00000585229 PLEKHF1Q96S99 279 aa13.1□□□□□ -0.31
SMCHD1-212ENST00000585229 EYA1Q99502 592 aa13.1□□□□□ -0.31
SMCHD1-212ENST00000585229 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.1□□□□□ -0.311e-7■■■□□ 14.7
SMCHD1-212ENST00000585229 SPATA31A6Q5VVP1 1343 aa13.1□□□□□ -0.31
SMCHD1-212ENST00000585229 PLEKHG2Q9H7P9 1386 aa13.09□□□□□ -0.31
SMCHD1-212ENST00000585229 HSPA1LP34931 641 aa13.09□□□□□ -0.31
SMCHD1-212ENST00000585229 RUNDC1Q96C34 613 aa13.09□□□□□ -0.31
SMCHD1-212ENST00000585229 PRDM11Q9NQV5 511 aa13.09□□□□□ -0.31
SMCHD1-212ENST00000585229 ANKRD24Q8TF21 1146 aa13.08□□□□□ -0.32
SMCHD1-212ENST00000585229 PNNQ9H307 717 aaKnown RBP13.08□□□□□ -0.32
SMCHD1-212ENST00000585229 LRP6O75581 1613 aa13.08□□□□□ -0.32
SMCHD1-212ENST00000585229 ZBED9Q6R2W3 1325 aa13.08□□□□□ -0.32
SMCHD1-212ENST00000585229 TNKS1BP1Q9C0C2 1729 aaKnown RBP13.08□□□□□ -0.32
SMCHD1-212ENST00000585229 DLG5Q8TDM6 1919 aa13.07□□□□□ -0.32
SMCHD1-212ENST00000585229 HAP1P54257 671 aaPredicted RBP13.07□□□□□ -0.32
SMCHD1-212ENST00000585229 HNRNPUQ00839 825 aaKnown RBP eCLIP13.07□□□□□ -0.32
SMCHD1-212ENST00000585229 CHRNA2Q15822 529 aa13.07□□□□□ -0.32
SMCHD1-212ENST00000585229 DPY19L2Q6NUT2 758 aa13.07□□□□□ -0.32
SMCHD1-212ENST00000585229 NGEFQ8N5V2 710 aa13.07□□□□□ -0.32
SMCHD1-212ENST00000585229 SLIT2O94813 1529 aa13.07□□□□□ -0.32
SMCHD1-212ENST00000585229 WNK3Q9BYP7 1800 aa13.06□□□□□ -0.32
SMCHD1-212ENST00000585229 ZBTB7CA1YPR0 619 aa13.06□□□□□ -0.32
SMCHD1-212ENST00000585229 FAM83GA6ND36 823 aa13.06□□□□□ -0.32
SMCHD1-212ENST00000585229 GTPBP6O43824 516 aaPredicted RBP13.06□□□□□ -0.32
SMCHD1-212ENST00000585229 NBPF6Q5VWK0 638 aa13.06□□□□□ -0.32
SMCHD1-212ENST00000585229 NBPF4Q96M43 638 aa13.06□□□□□ -0.32
SMCHD1-212ENST00000585229 YTHDC1Q96MU7 727 aaKnown RBP13.06□□□□□ -0.32
SMCHD1-212ENST00000585229 OCEL1Q9H607 264 aa13.06□□□□□ -0.32
SMCHD1-212ENST00000585229 WDR17Q8IZU2 1322 aa13.06□□□□□ -0.32
SMCHD1-212ENST00000585229 POTEB2H3BUK9 544 aa13.05□□□□□ -0.32
SMCHD1-212ENST00000585229 PRKAR2BP31323 418 aa13.05□□□□□ -0.32
SMCHD1-212ENST00000585229 SULT6B1Q6IMI4 303 aa13.05□□□□□ -0.32
SMCHD1-212ENST00000585229 AEBP1Q8IUX7 1158 aa13.05□□□□□ -0.32
SMCHD1-212ENST00000585229 CCDC146Q8IYE0 955 aa13.05□□□□□ -0.32
SMCHD1-212ENST00000585229 PKD1L3Q7Z443 1732 aa13.05□□□□□ -0.32
SMCHD1-212ENST00000585229 PARP4Q9UKK3 1724 aaKnown RBP13.05□□□□□ -0.32
SMCHD1-212ENST00000585229 SEC24BO95487 1268 aa13.04□□□□□ -0.32
SMCHD1-212ENST00000585229 HMOX1P09601 288 aa13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms