RNA–Protein interactions for RNA: ENST00000584944.5

TRAF4-215, Transcript of TNF receptor associated factor 4, humanhuman

TSL 2

Gene TRAF4, Length 825 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-215ENST00000584944 WNK3Q9BYP7 1800 aa18.58■□□□□ 0.57
TRAF4-215ENST00000584944 MYBBP1AQ9BQG0 1328 aaKnown RBP18.58■□□□□ 0.57
TRAF4-215ENST00000584944 MARCH10Q8NA82 808 aaPredicted RBP18.58■□□□□ 0.56
TRAF4-215ENST00000584944 RAPGEF4Q8WZA2 1011 aa18.58■□□□□ 0.56
TRAF4-215ENST00000584944 BCL11BQ9C0K0 894 aaPredicted RBP18.58■□□□□ 0.56
TRAF4-215ENST00000584944 BCL9O00512 1426 aa18.57■□□□□ 0.56
TRAF4-215ENST00000584944 U2SURPO15042 1029 aaKnown RBP18.57■□□□□ 0.56
TRAF4-215ENST00000584944 EIF4A2Q14240 407 aaKnown RBP18.57■□□□□ 0.56
TRAF4-215ENST00000584944 PRKRIP1Q9H875 184 aaPredicted RBP18.57■□□□□ 0.56
TRAF4-215ENST00000584944 RGPD3A6NKT7 1758 aaPredicted RBP18.56■□□□□ 0.56
TRAF4-215ENST00000584944 RGPD4Q7Z3J3 1758 aa18.56■□□□□ 0.56
TRAF4-215ENST00000584944 PTF1AQ7RTS3 328 aa18.56■□□□□ 0.56
TRAF4-215ENST00000584944 FAM208AQ9UK61 1670 aaKnown RBP18.55■□□□□ 0.56
TRAF4-215ENST00000584944 IL2RBP14784 551 aa18.55■□□□□ 0.56
TRAF4-215ENST00000584944 USHBP1Q8N6Y0 703 aa18.55■□□□□ 0.56
TRAF4-215ENST00000584944 NBPF6Q5VWK0 638 aa18.54■□□□□ 0.56
TRAF4-215ENST00000584944 NBPF4Q96M43 638 aa18.54■□□□□ 0.56
TRAF4-215ENST00000584944 EXOC5O00471 708 aa18.53■□□□□ 0.56
TRAF4-215ENST00000584944 TATP17735 454 aaPredicted RBP18.53■□□□□ 0.56
TRAF4-215ENST00000584944 PROM2Q8N271 834 aa18.52■□□□□ 0.56
TRAF4-215ENST00000584944 EYA1Q99502 592 aa18.52■□□□□ 0.56
TRAF4-215ENST00000584944 KCNQ2O43526 872 aa18.51■□□□□ 0.55
TRAF4-215ENST00000584944 SPON1Q9HCB6 807 aa18.51■□□□□ 0.55
TRAF4-215ENST00000584944 ANO8Q9HCE9 1232 aaPredicted RBP18.51■□□□□ 0.55
TRAF4-215ENST00000584944 NEFMP07197 916 aa18.5■□□□□ 0.55
TRAF4-215ENST00000584944 IL13P35225 146 aa18.5■□□□□ 0.55
TRAF4-215ENST00000584944 DIEXFQ68CQ4 756 aaKnown RBP18.5■□□□□ 0.55
TRAF4-215ENST00000584944 U2AF1L5P0DN76 240 aaPredicted RBP18.49■□□□□ 0.55
TRAF4-215ENST00000584944 U2AF1Q01081 240 aaKnown RBP eCLIP18.49■□□□□ 0.553e-7■■□□□ 12.8
TRAF4-215ENST00000584944 WDR43Q15061 677 aaKnown RBP eCLIP18.49■□□□□ 0.55
TRAF4-215ENST00000584944 SULT6B1Q6IMI4 303 aa18.49■□□□□ 0.55
TRAF4-215ENST00000584944 TNS2Q63HR2 1409 aa18.48■□□□□ 0.55
TRAF4-215ENST00000584944 IGSF1Q8N6C5 1336 aa18.48■□□□□ 0.55
TRAF4-215ENST00000584944 HMOX1P09601 288 aa18.47■□□□□ 0.55
TRAF4-215ENST00000584944 SPG7Q9UQ90 795 aa18.47■□□□□ 0.55
TRAF4-215ENST00000584944 ZCRB1Q8TBF4 217 aaKnown RBP18.46■□□□□ 0.55
TRAF4-215ENST00000584944 DDX54Q8TDD1 881 aaKnown RBP18.46■□□□□ 0.55
TRAF4-215ENST00000584944 TXNRD1Q16881 649 aa18.45■□□□□ 0.54
TRAF4-215ENST00000584944 PNNQ9H307 717 aaKnown RBP18.45■□□□□ 0.54
TRAF4-215ENST00000584944 PPP1R1BQ9UD71 204 aaPredicted RBP18.45■□□□□ 0.54
TRAF4-215ENST00000584944 CASZ1Q86V15 1759 aa18.45■□□□□ 0.54
TRAF4-215ENST00000584944 PLEKHO1Q53GL0 409 aaPredicted RBP18.44■□□□□ 0.54
TRAF4-215ENST00000584944 PDGFDQ9GZP0 370 aaPredicted RBP18.44■□□□□ 0.54
TRAF4-215ENST00000584944 AEBP1Q8IUX7 1158 aa18.43■□□□□ 0.54
TRAF4-215ENST00000584944 MRS2Q9HD23 443 aa18.43■□□□□ 0.54
TRAF4-215ENST00000584944 RGPD2P0DJD1 1756 aa18.42■□□□□ 0.54
TRAF4-215ENST00000584944 AMOTQ4VCS5 1084 aa18.42■□□□□ 0.54
TRAF4-215ENST00000584944 PCDH11XQ9BZA7 1347 aa18.42■□□□□ 0.54
TRAF4-215ENST00000584944 PCDH11YQ9BZA8 1340 aa18.42■□□□□ 0.54
TRAF4-215ENST00000584944 NHSQ6T4R5 1651 aa18.41■□□□□ 0.54
TRAF4-215ENST00000584944 COL3A1P02461 1466 aaPredicted RBP18.41■□□□□ 0.54
TRAF4-215ENST00000584944 C1orf141Q5JVX7 400 aa18.41■□□□□ 0.54
TRAF4-215ENST00000584944 ACSBG1Q96GR2 724 aa18.41■□□□□ 0.54
TRAF4-215ENST00000584944 MEGF6O75095 1541 aa18.4■□□□□ 0.54
TRAF4-215ENST00000584944 FCHSD2O94868 740 aa18.4■□□□□ 0.54
TRAF4-215ENST00000584944 SLC15A2Q16348 729 aa18.4■□□□□ 0.54
TRAF4-215ENST00000584944 STK32BQ9NY57 414 aa18.4■□□□□ 0.54
TRAF4-215ENST00000584944 MAPK8IP3Q9UPT6 1336 aa18.4■□□□□ 0.54
TRAF4-215ENST00000584944 KAT6BQ8WYB5 2073 aa18.39■□□□□ 0.53
TRAF4-215ENST00000584944 ZBTB7AO95365 584 aa18.39■□□□□ 0.53
TRAF4-215ENST00000584944 PRKAR2BP31323 418 aa18.39■□□□□ 0.53
TRAF4-215ENST00000584944 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.39■□□□□ 0.533e-6■□□□□ 10.9
TRAF4-215ENST00000584944 PTGER2P43116 358 aa18.38■□□□□ 0.53
TRAF4-215ENST00000584944 ZNF530Q6P9A1 599 aaPredicted RBP18.38■□□□□ 0.53
TRAF4-215ENST00000584944 KDRP35968 1356 aa18.38■□□□□ 0.53
TRAF4-215ENST00000584944 PLEKHG2Q9H7P9 1386 aa18.37■□□□□ 0.53
TRAF4-215ENST00000584944 NCAPD2Q15021 1401 aa18.37■□□□□ 0.53
TRAF4-215ENST00000584944 HSP90AB1P08238 724 aaKnown RBP18.36■□□□□ 0.53
TRAF4-215ENST00000584944 IFNL2Q8IZJ0 200 aa18.36■□□□□ 0.53
TRAF4-215ENST00000584944 SYTL4Q96C24 671 aaPredicted RBP18.36■□□□□ 0.53
TRAF4-215ENST00000584944 ATF5Q9Y2D1 282 aaPredicted RBP18.36■□□□□ 0.53
TRAF4-215ENST00000584944 BTAF1O14981 1849 aa18.35■□□□□ 0.53
TRAF4-215ENST00000584944 YY1P25490 414 aa18.35■□□□□ 0.53
TRAF4-215ENST00000584944 GAS2L2Q8NHY3 880 aa18.35■□□□□ 0.53
TRAF4-215ENST00000584944 RSPH6AQ9H0K4 717 aa18.34■□□□□ 0.53
TRAF4-215ENST00000584944 DCAF8L1A6NGE4 600 aa18.33■□□□□ 0.52
TRAF4-215ENST00000584944 MTFR1LQ9H019 292 aa18.33■□□□□ 0.52
TRAF4-215ENST00000584944 PAPPAQ13219 1627 aa18.33■□□□□ 0.52
TRAF4-215ENST00000584944 SGIP1Q9BQI5 828 aa18.32■□□□□ 0.52
TRAF4-215ENST00000584944 LRRC4BQ9NT99 713 aa18.32■□□□□ 0.52
TRAF4-215ENST00000584944 PHKG2P15735 406 aa18.31■□□□□ 0.52
TRAF4-215ENST00000584944 RTF1Q92541 710 aaKnown RBP18.31■□□□□ 0.52
TRAF4-215ENST00000584944 CYP27B1O15528 508 aa18.3■□□□□ 0.52
TRAF4-215ENST00000584944 DCAF5Q96JK2 942 aa18.3■□□□□ 0.52
TRAF4-215ENST00000584944 ADAMTS8Q9UP79 889 aa18.3■□□□□ 0.52
TRAF4-215ENST00000584944 CCER2I3L3R5 266 aa18.29■□□□□ 0.52
TRAF4-215ENST00000584944 ZNF827Q17R98 1081 aa18.29■□□□□ 0.52
TRAF4-215ENST00000584944 MTHFSDQ2M296 383 aaKnown RBP18.29■□□□□ 0.52
TRAF4-215ENST00000584944 AKAP4Q5JQC9 854 aa18.29■□□□□ 0.52
TRAF4-215ENST00000584944 CCDC146Q8IYE0 955 aa18.29■□□□□ 0.52
TRAF4-215ENST00000584944 FAM9BQ8IZU0 186 aa18.29■□□□□ 0.52
TRAF4-215ENST00000584944 GNAT3A8MTJ3 354 aa18.28■□□□□ 0.52
TRAF4-215ENST00000584944 RUNDC1Q96C34 613 aa18.28■□□□□ 0.52
TRAF4-215ENST00000584944 SYT17Q9BSW7 474 aa18.28■□□□□ 0.52
TRAF4-215ENST00000584944 FHDC1Q9C0D6 1143 aaPredicted RBP18.28■□□□□ 0.52
TRAF4-215ENST00000584944 PKD1L3Q7Z443 1732 aa18.27■□□□□ 0.52
TRAF4-215ENST00000584944 CCDC184Q52MB2 194 aa18.27■□□□□ 0.52
TRAF4-215ENST00000584944 SLC27A3Q5K4L6 730 aa18.27■□□□□ 0.52
TRAF4-215ENST00000584944 MIER1Q8N108 512 aa18.27■□□□□ 0.52
TRAF4-215ENST00000584944 AKT1S1Q96B36 256 aa18.27■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms