RNA–Protein interactions for RNA: ENST00000581039.1

RFFL-208, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, human

TSL 3

Gene RFFL, Length 424 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RFFL-208	ENST00000581039	ANKRD36B	Q8N2N9	1353 aa		14.05	□□□□□ -0.16
RFFL-208	ENST00000581039	LTN1	O94822	1766 aa		14.04	□□□□□ -0.16
RFFL-208	ENST00000581039		A0A1W2PP64	1363 aa		14.04	□□□□□ -0.16
RFFL-208	ENST00000581039	HOXC9	P31274	260 aa		14.03	□□□□□ -0.16
RFFL-208	ENST00000581039	USP54	Q70EL1	1684 aa		14.03	□□□□□ -0.16
RFFL-208	ENST00000581039	MAP3K19	Q56UN5	1328 aa		14.02	□□□□□ -0.17
RFFL-208	ENST00000581039	COL23A1	Q86Y22	540 aa	Predicted RBP	14.02	□□□□□ -0.17
RFFL-208	ENST00000581039	USP47	Q96K76	1375 aa		14.01	□□□□□ -0.17
RFFL-208	ENST00000581039	HMGB2	P26583	209 aa	Known RBP	14.01	□□□□□ -0.17
RFFL-208	ENST00000581039	YBX3	P16989	372 aa	Known RBP eCLIP	14	□□□□□ -0.17
RFFL-208	ENST00000581039	FBLN1	P23142	703 aa		14	□□□□□ -0.17
RFFL-208	ENST00000581039	NSD2	O96028	1365 aa		13.99	□□□□□ -0.17
RFFL-208	ENST00000581039	RAPGEF4	Q8WZA2	1011 aa		13.99	□□□□□ -0.17
RFFL-208	ENST00000581039	QSER1	Q2KHR3	1735 aa		13.98	□□□□□ -0.17
RFFL-208	ENST00000581039	CGNL1	Q0VF96	1302 aa		13.98	□□□□□ -0.17
RFFL-208	ENST00000581039	SLC24A1	O60721	1099 aa		13.98	□□□□□ -0.17
RFFL-208	ENST00000581039	NBPF6	Q5VWK0	638 aa		13.98	□□□□□ -0.17
RFFL-208	ENST00000581039	MSL1	Q68DK7	614 aa		13.98	□□□□□ -0.17
RFFL-208	ENST00000581039	FLAD1	Q8NFF5	587 aa		13.98	□□□□□ -0.17
RFFL-208	ENST00000581039	NBPF4	Q96M43	638 aa		13.98	□□□□□ -0.17
RFFL-208	ENST00000581039	GOLGB1	Q14789	3259 aa	Known RBP	13.98	□□□□□ -0.17
RFFL-208	ENST00000581039	IFFO2	Q5TF58	517 aa		13.97	□□□□□ -0.17
RFFL-208	ENST00000581039	CD2AP	Q9Y5K6	639 aa		13.97	□□□□□ -0.17
RFFL-208	ENST00000581039	COL24A1	Q17RW2	1714 aa		13.96	□□□□□ -0.17
RFFL-208	ENST00000581039	FAM208A	Q9UK61	1670 aa	Known RBP	13.96	□□□□□ -0.17
RFFL-208	ENST00000581039	TAT	P17735	454 aa	Predicted RBP	13.96	□□□□□ -0.17
RFFL-208	ENST00000581039	RRS1	Q15050	365 aa	Known RBP	13.96	□□□□□ -0.17
RFFL-208	ENST00000581039	USHBP1	Q8N6Y0	703 aa		13.96	□□□□□ -0.17
RFFL-208	ENST00000581039	MEGF6	O75095	1541 aa		13.95	□□□□□ -0.18
RFFL-208	ENST00000581039	ST20-MTHFS	A0A0A6YYL1	179 aa		13.95	□□□□□ -0.18
RFFL-208	ENST00000581039	TESK2	Q96S53	571 aa		13.95	□□□□□ -0.18
RFFL-208	ENST00000581039	GPBP1L1	Q9HC44	474 aa	Predicted RBP	13.95	□□□□□ -0.18
RFFL-208	ENST00000581039	TONSL	Q96HA7	1378 aa		13.95	□□□□□ -0.18
RFFL-208	ENST00000581039	LY75	O60449	1722 aa		13.94	□□□□□ -0.18
RFFL-208	ENST00000581039	MPRIP	Q6WCQ1	1025 aa		13.94	□□□□□ -0.18
RFFL-208	ENST00000581039	RTL1	A6NKG5	1358 aa		13.94	□□□□□ -0.18
RFFL-208	ENST00000581039	DOT1L	Q8TEK3	1739 aa		13.93	□□□□□ -0.18
RFFL-208	ENST00000581039	SMG6	Q86US8	1419 aa	Known RBP	13.93	□□□□□ -0.18
RFFL-208	ENST00000581039	ATP10D	Q9P241	1426 aa		13.93	□□□□□ -0.18
RFFL-208	ENST00000581039	FYB1	O15117	783 aa		13.93	□□□□□ -0.18
RFFL-208	ENST00000581039	GGNBP2	Q9H3C7	697 aa		13.93	□□□□□ -0.18
RFFL-208	ENST00000581039	SHANK3	Q9BYB0	1731 aa		13.93	□□□□□ -0.18
RFFL-208	ENST00000581039	PCDH11X	Q9BZA7	1347 aa		13.92	□□□□□ -0.18
RFFL-208	ENST00000581039	PCDH11Y	Q9BZA8	1340 aa		13.92	□□□□□ -0.18
RFFL-208	ENST00000581039	HSP90AB2P	Q58FF8	381 aa		13.92	□□□□□ -0.18
RFFL-208	ENST00000581039	SMARCC1	Q92922	1105 aa	Predicted RBP	13.92	□□□□□ -0.18
RFFL-208	ENST00000581039	AK7	Q96M32	723 aa		13.92	□□□□□ -0.18
RFFL-208	ENST00000581039	PALLD	Q8WX93	1383 aa		13.92	□□□□□ -0.18
RFFL-208	ENST00000581039	TUBGCP6	Q96RT7	1819 aa		13.92	□□□□□ -0.18
RFFL-208	ENST00000581039	ZNF526	Q8TF50	670 aa	Predicted RBP	13.9	□□□□□ -0.18
RFFL-208	ENST00000581039	INSR	P06213	1382 aa		13.89	□□□□□ -0.19
RFFL-208	ENST00000581039	CYP27B1	O15528	508 aa		13.89	□□□□□ -0.19
RFFL-208	ENST00000581039	PHF14	O94880	888 aa		13.89	□□□□□ -0.19
RFFL-208	ENST00000581039	TMF1	P82094	1093 aa		13.89	□□□□□ -0.19
RFFL-208	ENST00000581039	RGPD2	P0DJD1	1756 aa		13.88	□□□□□ -0.19
RFFL-208	ENST00000581039	CEP350	Q5VT06	3117 aa		13.88	□□□□□ -0.19
RFFL-208	ENST00000581039	HSPA6	P17066	643 aa		13.88	□□□□□ -0.19
RFFL-208	ENST00000581039	FLT4	P35916	1363 aa		13.87	□□□□□ -0.19
RFFL-208	ENST00000581039	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	13.87	□□□□□ -0.19
RFFL-208	ENST00000581039	PIGB	Q92521	554 aa		13.87	□□□□□ -0.19
RFFL-208	ENST00000581039	WWC3	Q9ULE0	1092 aa		13.87	□□□□□ -0.19
RFFL-208	ENST00000581039	IGSF1	Q8N6C5	1336 aa		13.87	□□□□□ -0.19
RFFL-208	ENST00000581039	SMIM5	Q71RC9	77 aa		13.86	□□□□□ -0.19
RFFL-208	ENST00000581039	AMIGO3	Q86WK7	504 aa		13.86	□□□□□ -0.19
RFFL-208	ENST00000581039	SPG7	Q9UQ90	795 aa		13.86	□□□□□ -0.19
RFFL-208	ENST00000581039	C5	P01031	1676 aa		13.85	□□□□□ -0.19
RFFL-208	ENST00000581039	KIF24	Q5T7B8	1368 aa		13.85	□□□□□ -0.19
RFFL-208	ENST00000581039	NSD3	Q9BZ95	1437 aa		13.85	□□□□□ -0.19
RFFL-208	ENST00000581039	SSFA2	P28290	1259 aa		13.85	□□□□□ -0.19
RFFL-208	ENST00000581039	NKX1-1	Q15270	411 aa	Predicted RBP	13.85	□□□□□ -0.19
RFFL-208	ENST00000581039	CDCA8	Q53HL2	280 aa		13.85	□□□□□ -0.19
RFFL-208	ENST00000581039	ADCY9	O60503	1353 aa		13.84	□□□□□ -0.19
RFFL-208	ENST00000581039	LOC102724428	A0A0B4J2F2	783 aa		13.84	□□□□□ -0.19
RFFL-208	ENST00000581039	PPM1G	O15355	546 aa	Predicted RBP	13.84	□□□□□ -0.19
RFFL-208	ENST00000581039	SIK1	P57059	783 aa		13.84	□□□□□ -0.19
RFFL-208	ENST00000581039	LINC00116	Q8NCU8	138 aa		13.83	□□□□□ -0.2
RFFL-208	ENST00000581039	TMOD3	Q9NYL9	352 aa		13.83	□□□□□ -0.2
RFFL-208	ENST00000581039	EMILIN1	Q9Y6C2	1016 aa		13.83	□□□□□ -0.2
RFFL-208	ENST00000581039	C4B	P0C0L5	1744 aa		13.82	□□□□□ -0.2
RFFL-208	ENST00000581039	GNPAT	O15228	680 aa		13.82	□□□□□ -0.2
RFFL-208	ENST00000581039	ATP6V1A	P38606	617 aa		13.82	□□□□□ -0.2
RFFL-208	ENST00000581039	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	13.81	□□□□□ -0.2
RFFL-208	ENST00000581039	ASAP1	Q9ULH1	1129 aa		13.81	□□□□□ -0.2
RFFL-208	ENST00000581039	KIF3C	O14782	793 aa		13.8	□□□□□ -0.2
RFFL-208	ENST00000581039	MMP10	P09238	476 aa		13.8	□□□□□ -0.2
RFFL-208	ENST00000581039	ITPK1	Q13572	414 aa		13.8	□□□□□ -0.2
RFFL-208	ENST00000581039	IFNL2	Q8IZJ0	200 aa		13.8	□□□□□ -0.2
RFFL-208	ENST00000581039	CARD14	Q9BXL6	1004 aa		13.8	□□□□□ -0.2
RFFL-208	ENST00000581039	TAF1L	Q8IZX4	1826 aa		13.8	□□□□□ -0.2
RFFL-208	ENST00000581039	TRAPPC3L	Q5T215	181 aa		13.79	□□□□□ -0.2
RFFL-208	ENST00000581039	EYA1	Q99502	592 aa		13.79	□□□□□ -0.2
RFFL-208	ENST00000581039	WASHC2A	Q641Q2	1341 aa		13.79	□□□□□ -0.2
RFFL-208	ENST00000581039	PHKG2	P15735	406 aa		13.78	□□□□□ -0.2
RFFL-208	ENST00000581039	TGFB2	P61812	414 aa		13.78	□□□□□ -0.2
RFFL-208	ENST00000581039	NLGN1	Q8N2Q7	840 aa		13.78	□□□□□ -0.2
RFFL-208	ENST00000581039	ATG3	Q9NT62	314 aa		13.78	□□□□□ -0.2
RFFL-208	ENST00000581039	BCS1L	Q9Y276	419 aa		13.78	□□□□□ -0.2
RFFL-208	ENST00000581039	APLP1	P51693	650 aa		13.77	□□□□□ -0.21
RFFL-208	ENST00000581039	RTCB	Q9Y3I0	505 aa	Known RBP	13.77	□□□□□ -0.21
RFFL-208	ENST00000581039	ITGB4	P16144	1822 aa		13.76	□□□□□ -0.21

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