RNA–Protein interactions for RNA: ENST00000580751.5

SS18-216, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 547 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-216ENST00000580751 PDE3BQ13370 1112 aa20.74■□□□□ 0.91
SS18-216ENST00000580751 SULT6B1Q6IMI4 303 aa20.74■□□□□ 0.91
SS18-216ENST00000580751 KRT27Q7Z3Y8 459 aa20.74■□□□□ 0.91
SS18-216ENST00000580751 AEBP1Q8IUX7 1158 aa20.72■□□□□ 0.91
SS18-216ENST00000580751 PKD1L3Q7Z443 1732 aa20.7■□□□□ 0.9
SS18-216ENST00000580751 ZCRB1Q8TBF4 217 aaKnown RBP20.7■□□□□ 0.9
SS18-216ENST00000580751 HMOX1P09601 288 aa20.69■□□□□ 0.9
SS18-216ENST00000580751 U2AF1L5P0DN76 240 aaPredicted RBP20.69■□□□□ 0.9
SS18-216ENST00000580751 U2AF1Q01081 240 aaKnown RBP eCLIP20.69■□□□□ 0.92e-6■■■■□ 21.7
SS18-216ENST00000580751 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP20.69■□□□□ 0.9
SS18-216ENST00000580751 SPG7Q9UQ90 795 aa20.68■□□□□ 0.9
SS18-216ENST00000580751 PCDH11XQ9BZA7 1347 aa20.68■□□□□ 0.9
SS18-216ENST00000580751 PCDH11YQ9BZA8 1340 aa20.68■□□□□ 0.9
SS18-216ENST00000580751 EP400Q96L91 3159 aa20.68■□□□□ 0.9
SS18-216ENST00000580751 SHANK3Q9BYB0 1731 aa20.67■□□□□ 0.9
SS18-216ENST00000580751 AMOTQ4VCS5 1084 aa20.66■□□□□ 0.9
SS18-216ENST00000580751 FCHSD2O94868 740 aa20.65■□□□□ 0.9
SS18-216ENST00000580751 WDR43Q15061 677 aaKnown RBP eCLIP20.65■□□□□ 0.9
SS18-216ENST00000580751 PLEKHO1Q53GL0 409 aaPredicted RBP20.65■□□□□ 0.9
SS18-216ENST00000580751 MARCH10Q8NA82 808 aaPredicted RBP20.65■□□□□ 0.9
SS18-216ENST00000580751 BCL9O00512 1426 aa20.64■□□□□ 0.89
SS18-216ENST00000580751 FAM196AQ6ZSG2 479 aa20.64■□□□□ 0.89
SS18-216ENST00000580751 DDX54Q8TDD1 881 aaKnown RBP20.64■□□□□ 0.89
SS18-216ENST00000580751 RSPH6AQ9H0K4 717 aa20.64■□□□□ 0.89
SS18-216ENST00000580751 MRS2Q9HD23 443 aa20.63■□□□□ 0.89
SS18-216ENST00000580751 PRKAR2BP31323 418 aa20.62■□□□□ 0.89
SS18-216ENST00000580751 FAM182BQ5T319 152 aa20.62■□□□□ 0.89
SS18-216ENST00000580751 PNNQ9H307 717 aaKnown RBP20.62■□□□□ 0.89
SS18-216ENST00000580751 IFNL2Q8IZJ0 200 aa20.6■□□□□ 0.89
SS18-216ENST00000580751 CYP27B1O15528 508 aa20.59■□□□□ 0.89
SS18-216ENST00000580751 NEFMP07197 916 aa20.59■□□□□ 0.89
SS18-216ENST00000580751 CCDC184Q52MB2 194 aa20.59■□□□□ 0.89
SS18-216ENST00000580751 ZNF530Q6P9A1 599 aaPredicted RBP20.59■□□□□ 0.89
SS18-216ENST00000580751 PHKG2P15735 406 aa20.58■□□□□ 0.89
SS18-216ENST00000580751 C1orf141Q5JVX7 400 aa20.58■□□□□ 0.89
SS18-216ENST00000580751 GAS2L2Q8NHY3 880 aa20.58■□□□□ 0.89
SS18-216ENST00000580751 MAPK8IP3Q9UPT6 1336 aa20.56■□□□□ 0.88
SS18-216ENST00000580751 HSP90AB1P08238 724 aaKnown RBP20.56■□□□□ 0.88
SS18-216ENST00000580751 NKX1-1Q15270 411 aaPredicted RBP20.56■□□□□ 0.88
SS18-216ENST00000580751 MTHFSDQ2M296 383 aaKnown RBP20.55■□□□□ 0.88
SS18-216ENST00000580751 ADAMTS8Q9UP79 889 aa20.55■□□□□ 0.88
SS18-216ENST00000580751 DOT1LQ8TEK3 1739 aa20.55■□□□□ 0.88
SS18-216ENST00000580751 SBF2Q86WG5 1849 aa20.55■□□□□ 0.88
SS18-216ENST00000580751 NHSQ6T4R5 1651 aa20.54■□□□□ 0.88
SS18-216ENST00000580751 AKAP4Q5JQC9 854 aa20.54■□□□□ 0.88
SS18-216ENST00000580751 CCDC125Q86Z20 511 aa20.54■□□□□ 0.88
SS18-216ENST00000580751 PHACTR3Q96KR7 559 aa20.54■□□□□ 0.88
SS18-216ENST00000580751 PNISRQ8TF01 805 aaKnown RBP20.53■□□□□ 0.88
SS18-216ENST00000580751 PLEKHF1Q96S99 279 aa20.53■□□□□ 0.88
SS18-216ENST00000580751 TRIM37O94972 964 aa20.52■□□□□ 0.88
SS18-216ENST00000580751 DCAF5Q96JK2 942 aa20.52■□□□□ 0.88
SS18-216ENST00000580751 MAP3K5Q99683 1374 aa20.51■□□□□ 0.87
SS18-216ENST00000580751 TNS1Q9HBL0 1735 aaKnown RBP20.51■□□□□ 0.87
SS18-216ENST00000580751 TOGARAM1Q9Y4F4 1720 aa20.51■□□□□ 0.87
SS18-216ENST00000580751 SF3B2Q13435 895 aaKnown RBP20.51■□□□□ 0.87
SS18-216ENST00000580751 UPF1Q92900 1129 aaKnown RBP eCLIP20.51■□□□□ 0.87
SS18-216ENST00000580751 BCL11BQ9C0K0 894 aaPredicted RBP20.51■□□□□ 0.87
SS18-216ENST00000580751 SOCS7O14512 581 aa20.5■□□□□ 0.87
SS18-216ENST00000580751 RUNDC1Q96C34 613 aa20.5■□□□□ 0.87
SS18-216ENST00000580751 ACSBG1Q96GR2 724 aa20.5■□□□□ 0.87
SS18-216ENST00000580751 KAT6BQ8WYB5 2073 aa20.5■□□□□ 0.87
SS18-216ENST00000580751 GNAT3A8MTJ3 354 aa20.49■□□□□ 0.87
SS18-216ENST00000580751 KDM6AO15550 1401 aaPredicted RBP20.49■□□□□ 0.87
SS18-216ENST00000580751 CCDC146Q8IYE0 955 aa20.48■□□□□ 0.87
SS18-216ENST00000580751 SYTL4Q96C24 671 aaPredicted RBP20.48■□□□□ 0.87
SS18-216ENST00000580751 ADAMTS7Q9UKP4 1686 aa20.48■□□□□ 0.87
SS18-216ENST00000580751 SCN11AQ9UI33 1791 aa20.47■□□□□ 0.87
SS18-216ENST00000580751 ERVV-2B6SEH9 535 aa20.47■□□□□ 0.87
SS18-216ENST00000580751 KCNQ2O43526 872 aa20.47■□□□□ 0.87
SS18-216ENST00000580751 PRIM1P49642 420 aaKnown RBP20.47■□□□□ 0.87
SS18-216ENST00000580751 NFE2L2Q16236 605 aa20.47■□□□□ 0.87
SS18-216ENST00000580751 MPRIPQ6WCQ1 1025 aa20.47■□□□□ 0.87
SS18-216ENST00000580751 HTATSF1O43719 755 aaKnown RBP20.45■□□□□ 0.86
SS18-216ENST00000580751 RTF1Q92541 710 aaKnown RBP20.45■□□□□ 0.86
SS18-216ENST00000580751 TMOD3Q9NYL9 352 aa20.45■□□□□ 0.86
SS18-216ENST00000580751 BTAF1O14981 1849 aa20.45■□□□□ 0.86
SS18-216ENST00000580751 ITGB4P16144 1822 aa20.45■□□□□ 0.86
SS18-216ENST00000580751 MRC1P22897 1456 aa20.44■□□□□ 0.86
SS18-216ENST00000580751 RNMTO43148 476 aaKnown RBP20.44■□□□□ 0.86
SS18-216ENST00000580751 APBA3O96018 575 aa20.44■□□□□ 0.86
SS18-216ENST00000580751 BAG6P46379 1132 aa20.44■□□□□ 0.86
SS18-216ENST00000580751 FAM9BQ8IZU0 186 aa20.44■□□□□ 0.86
SS18-216ENST00000580751 PTF1AQ7RTS3 328 aa20.43■□□□□ 0.86
SS18-216ENST00000580751 RGPD3A6NKT7 1758 aaPredicted RBP20.43■□□□□ 0.86
SS18-216ENST00000580751 RGPD4Q7Z3J3 1758 aa20.43■□□□□ 0.86
SS18-216ENST00000580751 VIRMAQ69YN4 1812 aaKnown RBP20.43■□□□□ 0.86
SS18-216ENST00000580751 DLG5Q8TDM6 1919 aa20.43■□□□□ 0.86
SS18-216ENST00000580751 TMPOP42166 694 aaKnown RBP20.42■□□□□ 0.86
SS18-216ENST00000580751 CABP4P57796 275 aa20.42■□□□□ 0.86
SS18-216ENST00000580751 LMOD3Q0VAK6 560 aa20.42■□□□□ 0.86
SS18-216ENST00000580751 CEMIPQ8WUJ3 1361 aa20.42■□□□□ 0.86
SS18-216ENST00000580751 RIPK4P57078 832 aa20.41■□□□□ 0.86
SS18-216ENST00000580751 SLC52A2Q9HAB3 445 aa20.41■□□□□ 0.86
SS18-216ENST00000580751 LGR6Q9HBX8 967 aa20.41■□□□□ 0.86
SS18-216ENST00000580751 IL17REQ8NFR9 667 aa20.4■□□□□ 0.86
SS18-216ENST00000580751 PIGBQ92521 554 aa20.4■□□□□ 0.86
SS18-216ENST00000580751 APAF1O14727 1248 aa20.39■□□□□ 0.85
SS18-216ENST00000580751 PLSCR1O15162 318 aa20.39■□□□□ 0.85
SS18-216ENST00000580751 TEFQ10587 303 aa20.39■□□□□ 0.85
SS18-216ENST00000580751 MCM10Q7L590 875 aa20.38■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms