RNA–Protein interactions for RNA: ENST00000580287.5

CDK5RAP3-217, Transcript of CDK5 regulatory subunit associated protein 3, humanhuman

TSL 1 (best)

Gene CDK5RAP3, Length 2,609 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP3-217ENST00000580287 EXOSC9Q06265 439 aaKnown RBP16.4■□□□□ 0.22
CDK5RAP3-217ENST00000580287 MIS18AQ9NYP9 233 aa16.4■□□□□ 0.22
CDK5RAP3-217ENST00000580287 ELL2O00472 640 aaPredicted RBP16.39■□□□□ 0.21
CDK5RAP3-217ENST00000580287 MYH16Q9H6N6 1097 aa16.39■□□□□ 0.21
CDK5RAP3-217ENST00000580287 STRN4Q9NRL3 753 aa16.39■□□□□ 0.21
CDK5RAP3-217ENST00000580287 C20orf194Q5TEA3 1177 aa16.38■□□□□ 0.21
CDK5RAP3-217ENST00000580287 PHRF1Q9P1Y6 1649 aaKnown RBP16.37■□□□□ 0.21
CDK5RAP3-217ENST00000580287 RGPD2P0DJD1 1756 aa16.37■□□□□ 0.21
CDK5RAP3-217ENST00000580287 ADAMTS2O95450 1211 aa16.36■□□□□ 0.21
CDK5RAP3-217ENST00000580287 MBIPQ9NS73 344 aa16.36■□□□□ 0.21
CDK5RAP3-217ENST00000580287 USP35Q9P2H5 1018 aa16.36■□□□□ 0.21
CDK5RAP3-217ENST00000580287 RGPD5Q99666 1765 aa16.36■□□□□ 0.21
CDK5RAP3-217ENST00000580287 NHSL1Q5SYE7 1610 aa16.36■□□□□ 0.21
CDK5RAP3-217ENST00000580287 NUTM2BA6NNL0 878 aaPredicted RBP16.36■□□□□ 0.21
CDK5RAP3-217ENST00000580287 NUTM2EB1AL46 878 aaPredicted RBP16.36■□□□□ 0.21
CDK5RAP3-217ENST00000580287 KRT24Q2M2I5 525 aa16.36■□□□□ 0.21
CDK5RAP3-217ENST00000580287 NUTM2AQ8IVF1 878 aaPredicted RBP16.36■□□□□ 0.21
CDK5RAP3-217ENST00000580287 CPDO75976 1380 aa16.36■□□□□ 0.21
CDK5RAP3-217ENST00000580287 TSPYL6Q8N831 410 aa16.35■□□□□ 0.21
CDK5RAP3-217ENST00000580287 GAS2L2Q8NHY3 880 aa16.35■□□□□ 0.21
CDK5RAP3-217ENST00000580287 RTF1Q92541 710 aaKnown RBP16.35■□□□□ 0.21
CDK5RAP3-217ENST00000580287 CRBNQ96SW2 442 aa16.35■□□□□ 0.21
CDK5RAP3-217ENST00000580287 IL17REQ8NFR9 667 aa16.35■□□□□ 0.21
CDK5RAP3-217ENST00000580287 TCERG1O14776 1098 aaKnown RBP16.34■□□□□ 0.21
CDK5RAP3-217ENST00000580287 LMOD3Q0VAK6 560 aa16.34■□□□□ 0.21
CDK5RAP3-217ENST00000580287 LGR6Q9HBX8 967 aa16.34■□□□□ 0.21
CDK5RAP3-217ENST00000580287 IL16Q14005 1332 aa16.34■□□□□ 0.21
CDK5RAP3-217ENST00000580287 LARP1Q6PKG0 1096 aaKnown RBP16.34■□□□□ 0.21
CDK5RAP3-217ENST00000580287 TOM1L2Q6ZVM7 507 aa16.34■□□□□ 0.21
CDK5RAP3-217ENST00000580287 CAMTA1Q9Y6Y1 1673 aa16.34■□□□□ 0.21
CDK5RAP3-217ENST00000580287 GNAT3A8MTJ3 354 aa16.33■□□□□ 0.21
CDK5RAP3-217ENST00000580287 ZNF853P0CG23 659 aa16.33■□□□□ 0.21
CDK5RAP3-217ENST00000580287 RARSP54136 660 aaKnown RBP16.33■□□□□ 0.21
CDK5RAP3-217ENST00000580287 CERKQ8TCT0 537 aa16.33■□□□□ 0.21
CDK5RAP3-217ENST00000580287 BTG4Q9NY30 223 aa16.33■□□□□ 0.21
CDK5RAP3-217ENST00000580287 ZNF530Q6P9A1 599 aaPredicted RBP16.33■□□□□ 0.2
CDK5RAP3-217ENST00000580287 MPRIPQ6WCQ1 1025 aa16.33■□□□□ 0.2
CDK5RAP3-217ENST00000580287 FRAT1Q92837 279 aaPredicted RBP16.33■□□□□ 0.2
CDK5RAP3-217ENST00000580287 CFAP44Q96MT7 982 aa16.33■□□□□ 0.2
CDK5RAP3-217ENST00000580287 CRYBG1Q9Y4K1 1723 aa16.33■□□□□ 0.2
CDK5RAP3-217ENST00000580287 EVA1CP58658 441 aa16.32■□□□□ 0.2
CDK5RAP3-217ENST00000580287 IFT57Q9NWB7 429 aa16.32■□□□□ 0.2
CDK5RAP3-217ENST00000580287 DLG5Q8TDM6 1919 aa16.32■□□□□ 0.2
CDK5RAP3-217ENST00000580287 C8orf58Q8NAV2 365 aa16.32■□□□□ 0.2
CDK5RAP3-217ENST00000580287 GNAI1P63096 354 aa16.32■□□□□ 0.2
CDK5RAP3-217ENST00000580287 RAPGEF4Q8WZA2 1011 aa16.32■□□□□ 0.2
CDK5RAP3-217ENST00000580287 TNNQ9UQP3 1299 aa16.32■□□□□ 0.2
CDK5RAP3-217ENST00000580287 COL18A1P39060 1754 aa16.31■□□□□ 0.2
CDK5RAP3-217ENST00000580287 NPM2Q86SE8 214 aaKnown RBP16.31■□□□□ 0.2
CDK5RAP3-217ENST00000580287 PLEKHO1Q53GL0 409 aaPredicted RBP16.31■□□□□ 0.2
CDK5RAP3-217ENST00000580287 CALD1Q05682 793 aaKnown RBP16.3■□□□□ 0.2
CDK5RAP3-217ENST00000580287 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.3■□□□□ 0.2
CDK5RAP3-217ENST00000580287 WDR17Q8IZU2 1322 aa16.29■□□□□ 0.2
CDK5RAP3-217ENST00000580287 SSH1Q8WYL5 1049 aa16.29■□□□□ 0.2
CDK5RAP3-217ENST00000580287 MAP3K5Q99683 1374 aa16.29■□□□□ 0.2
CDK5RAP3-217ENST00000580287 CRB1P82279 1406 aa16.29■□□□□ 0.2
CDK5RAP3-217ENST00000580287 AHDC1Q5TGY3 1603 aaPredicted RBP16.29■□□□□ 0.2
CDK5RAP3-217ENST00000580287 CHL1O00533 1208 aa16.29■□□□□ 0.2
CDK5RAP3-217ENST00000580287 MEGF6O75095 1541 aa16.28■□□□□ 0.2
CDK5RAP3-217ENST00000580287 TSPYL4Q9UJ04 414 aa16.28■□□□□ 0.2
CDK5RAP3-217ENST00000580287 COL5A2P05997 1499 aaPredicted RBP16.27■□□□□ 0.2
CDK5RAP3-217ENST00000580287 VAMP4O75379 141 aa16.27■□□□□ 0.2
CDK5RAP3-217ENST00000580287 TATP17735 454 aaPredicted RBP16.27■□□□□ 0.2
CDK5RAP3-217ENST00000580287 CLUAP1Q96AJ1 413 aa16.27■□□□□ 0.2
CDK5RAP3-217ENST00000580287 DEKP35659 375 aaKnown RBP16.27■□□□□ 0.19
CDK5RAP3-217ENST00000580287 NCAPD2Q15021 1401 aa16.27■□□□□ 0.19
CDK5RAP3-217ENST00000580287 AMOTQ4VCS5 1084 aa16.27■□□□□ 0.19
CDK5RAP3-217ENST00000580287 SMC4Q9NTJ3 1288 aa16.27■□□□□ 0.19
CDK5RAP3-217ENST00000580287 NBR1Q14596 966 aa16.26■□□□□ 0.19
CDK5RAP3-217ENST00000580287 C1orf141Q5JVX7 400 aa16.26■□□□□ 0.19
CDK5RAP3-217ENST00000580287 CANXP27824 592 aaKnown RBP16.26■□□□□ 0.19
CDK5RAP3-217ENST00000580287 TWISTNBQ3B726 338 aaPredicted RBP16.26■□□□□ 0.19
CDK5RAP3-217ENST00000580287 AKAP4Q5JQC9 854 aa16.26■□□□□ 0.19
CDK5RAP3-217ENST00000580287 PANK1Q8TE04 598 aa16.26■□□□□ 0.19
CDK5RAP3-217ENST00000580287 PHLPP1O60346 1717 aa16.25■□□□□ 0.19
CDK5RAP3-217ENST00000580287 KCNQ3O43525 872 aa16.25■□□□□ 0.19
CDK5RAP3-217ENST00000580287 COL16A1Q07092 1604 aaPredicted RBP16.25■□□□□ 0.19
CDK5RAP3-217ENST00000580287 ABCA3Q99758 1704 aa16.25■□□□□ 0.19
CDK5RAP3-217ENST00000580287 CYP27B1O15528 508 aa16.24■□□□□ 0.19
CDK5RAP3-217ENST00000580287 HTATSF1O43719 755 aaKnown RBP16.24■□□□□ 0.19
CDK5RAP3-217ENST00000580287 RNMTO43148 476 aaKnown RBP16.23■□□□□ 0.19
CDK5RAP3-217ENST00000580287 RLBP1P12271 317 aa16.23■□□□□ 0.19
CDK5RAP3-217ENST00000580287 TAF7Q15545 349 aaPredicted RBP16.23■□□□□ 0.19
CDK5RAP3-217ENST00000580287 DDX54Q8TDD1 881 aaKnown RBP16.23■□□□□ 0.19
CDK5RAP3-217ENST00000580287 NECTIN2Q92692 538 aa16.23■□□□□ 0.19
CDK5RAP3-217ENST00000580287 CARD10Q9BWT7 1032 aa16.23■□□□□ 0.19
CDK5RAP3-217ENST00000580287 NOP58Q9Y2X3 529 aaKnown RBP16.23■□□□□ 0.19
CDK5RAP3-217ENST00000580287 NOB1Q9ULX3 412 aaKnown RBP16.22■□□□□ 0.19
CDK5RAP3-217ENST00000580287 LMO7Q8WWI1 1683 aa16.22■□□□□ 0.19
CDK5RAP3-217ENST00000580287 PHKG2P15735 406 aa16.22■□□□□ 0.19
CDK5RAP3-217ENST00000580287 HSPA1LP34931 641 aa16.22■□□□□ 0.19
CDK5RAP3-217ENST00000580287 COG6Q9Y2V7 657 aa16.22■□□□□ 0.19
CDK5RAP3-217ENST00000580287 TEFQ10587 303 aa16.21■□□□□ 0.19
CDK5RAP3-217ENST00000580287 SPG7Q9UQ90 795 aa16.21■□□□□ 0.19
CDK5RAP3-217ENST00000580287 FAM208AQ9UK61 1670 aaKnown RBP16.21■□□□□ 0.19
CDK5RAP3-217ENST00000580287 CEMIPQ8WUJ3 1361 aa16.21■□□□□ 0.18
CDK5RAP3-217ENST00000580287 IL2RBP14784 551 aa16.2■□□□□ 0.18
CDK5RAP3-217ENST00000580287 C8orf37Q96NL8 207 aa16.2■□□□□ 0.18
CDK5RAP3-217ENST00000580287 CT47B1P0C2W7 299 aaPredicted RBP16.19■□□□□ 0.18
CDK5RAP3-217ENST00000580287 ANP32AP39687 249 aaKnown RBP16.19■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 100.7 ms