RNA–Protein interactions for RNA: ENST00000580073.1

TRAF4-214, Transcript of TNF receptor associated factor 4, humanhuman

TSL 3

Gene TRAF4, Length 449 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-214ENST00000580073 MAP3K19Q56UN5 1328 aa18.7■□□□□ 0.58
TRAF4-214ENST00000580073 HOXC9P31274 260 aa18.69■□□□□ 0.58
TRAF4-214ENST00000580073 ANKRD26Q9UPS8 1709 aa18.69■□□□□ 0.58
TRAF4-214ENST00000580073 USP47Q96K76 1375 aa18.68■□□□□ 0.58
TRAF4-214ENST00000580073 DDX54Q8TDD1 881 aaKnown RBP18.68■□□□□ 0.58
TRAF4-214ENST00000580073 SLC16A10Q8TF71 515 aa18.68■□□□□ 0.58
TRAF4-214ENST00000580073 FHDC1Q9C0D6 1143 aaPredicted RBP18.68■□□□□ 0.58
TRAF4-214ENST00000580073 KIF24Q5T7B8 1368 aa18.68■□□□□ 0.58
TRAF4-214ENST00000580073 TAF1LQ8IZX4 1826 aa18.67■□□□□ 0.58
TRAF4-214ENST00000580073 ARXQ96QS3 562 aa18.67■□□□□ 0.58
TRAF4-214ENST00000580073 MEGF6O75095 1541 aa18.67■□□□□ 0.58
TRAF4-214ENST00000580073 PKD1L3Q7Z443 1732 aa18.66■□□□□ 0.58
TRAF4-214ENST00000580073 SYT17Q9BSW7 474 aa18.66■□□□□ 0.58
TRAF4-214ENST00000580073 ITGB4P16144 1822 aa18.65■□□□□ 0.58
TRAF4-214ENST00000580073 POLD1P28340 1107 aa18.65■□□□□ 0.58
TRAF4-214ENST00000580073 SYTL4Q96C24 671 aaPredicted RBP18.65■□□□□ 0.58
TRAF4-214ENST00000580073 SGIP1Q9BQI5 828 aa18.65■□□□□ 0.58
TRAF4-214ENST00000580073 ZCRB1Q8TBF4 217 aaKnown RBP18.64■□□□□ 0.57
TRAF4-214ENST00000580073 FLT4P35916 1363 aa18.64■□□□□ 0.57
TRAF4-214ENST00000580073 ZNF827Q17R98 1081 aa18.63■□□□□ 0.57
TRAF4-214ENST00000580073 RAPGEF4Q8WZA2 1011 aa18.63■□□□□ 0.57
TRAF4-214ENST00000580073 MAP2P11137 1827 aaKnown RBP18.63■□□□□ 0.57
TRAF4-214ENST00000580073 AKT1S1Q96B36 256 aa18.62■□□□□ 0.57
TRAF4-214ENST00000580073 TFCP2L1Q9NZI6 479 aa18.62■□□□□ 0.57
TRAF4-214ENST00000580073 PCDH11XQ9BZA7 1347 aa18.62■□□□□ 0.57
TRAF4-214ENST00000580073 PCDH11YQ9BZA8 1340 aa18.62■□□□□ 0.57
TRAF4-214ENST00000580073 NSD2O96028 1365 aa18.61■□□□□ 0.57
TRAF4-214ENST00000580073 INSRP06213 1382 aa18.61■□□□□ 0.57
TRAF4-214ENST00000580073 LRRC4BQ9NT99 713 aa18.61■□□□□ 0.57
TRAF4-214ENST00000580073 TATP17735 454 aaPredicted RBP18.59■□□□□ 0.57
TRAF4-214ENST00000580073 PRIM1P49642 420 aaKnown RBP18.59■□□□□ 0.57
TRAF4-214ENST00000580073 CCNL1Q9UK58 526 aaPredicted RBP18.59■□□□□ 0.57
TRAF4-214ENST00000580073 TOGARAM1Q9Y4F4 1720 aa18.59■□□□□ 0.57
TRAF4-214ENST00000580073 PNPLA7Q6ZV29 1317 aa18.58■□□□□ 0.57
TRAF4-214ENST00000580073 FYB1O15117 783 aa18.58■□□□□ 0.56
TRAF4-214ENST00000580073 RRS1Q15050 365 aaKnown RBP18.58■□□□□ 0.56
TRAF4-214ENST00000580073 GGNBP2Q9H3C7 697 aa18.58■□□□□ 0.56
TRAF4-214ENST00000580073 NSD3Q9BZ95 1437 aa18.57■□□□□ 0.56
TRAF4-214ENST00000580073 TIMELESSQ9UNS1 1208 aa18.56■□□□□ 0.56
TRAF4-214ENST00000580073 C4BP0C0L5 1744 aa18.56■□□□□ 0.56
TRAF4-214ENST00000580073 UBR3Q6ZT12 1888 aa18.55■□□□□ 0.56
TRAF4-214ENST00000580073 GPR162Q16538 588 aa18.55■□□□□ 0.56
TRAF4-214ENST00000580073 NBPF6Q5VWK0 638 aa18.55■□□□□ 0.56
TRAF4-214ENST00000580073 KLHL34Q8N239 644 aa18.55■□□□□ 0.56
TRAF4-214ENST00000580073 NBPF4Q96M43 638 aa18.55■□□□□ 0.56
TRAF4-214ENST00000580073 ZNF784Q8NCA9 323 aaPredicted RBP18.54■□□□□ 0.56
TRAF4-214ENST00000580073 NCAPD2Q15021 1401 aa18.52■□□□□ 0.56
TRAF4-214ENST00000580073 USHBP1Q8N6Y0 703 aa18.52■□□□□ 0.56
TRAF4-214ENST00000580073 FLAD1Q8NFF5 587 aa18.52■□□□□ 0.56
TRAF4-214ENST00000580073 PALLDQ8WX93 1383 aa18.52■□□□□ 0.55
TRAF4-214ENST00000580073 MSH5O43196 834 aa18.51■□□□□ 0.55
TRAF4-214ENST00000580073 FBLN1P23142 703 aa18.51■□□□□ 0.55
TRAF4-214ENST00000580073 SMARCC1Q92922 1105 aaPredicted RBP18.51■□□□□ 0.55
TRAF4-214ENST00000580073 PLEKHG2Q9H7P9 1386 aa18.51■□□□□ 0.55
TRAF4-214ENST00000580073 HSP90AB2PQ58FF8 381 aa18.5■□□□□ 0.55
TRAF4-214ENST00000580073 UTRNP46939 3433 aa18.5■□□□□ 0.55
TRAF4-214ENST00000580073 ZNF831Q5JPB2 1677 aa18.47■□□□□ 0.55
TRAF4-214ENST00000580073 KCNQ4P56696 695 aa18.47■□□□□ 0.55
TRAF4-214ENST00000580073 PELP1Q8IZL8 1130 aaKnown RBP18.47■□□□□ 0.55
TRAF4-214ENST00000580073 SPG7Q9UQ90 795 aa18.47■□□□□ 0.55
TRAF4-214ENST00000580073 GRIN3BO60391 1043 aa18.46■□□□□ 0.55
TRAF4-214ENST00000580073 MPRIPQ6WCQ1 1025 aa18.45■□□□□ 0.54
TRAF4-214ENST00000580073 AK7Q96M32 723 aa18.45■□□□□ 0.54
TRAF4-214ENST00000580073 EMILIN1Q9Y6C2 1016 aa18.45■□□□□ 0.54
TRAF4-214ENST00000580073 PPM1GO15355 546 aaPredicted RBP18.44■□□□□ 0.54
TRAF4-214ENST00000580073 COL23A1Q86Y22 540 aaPredicted RBP18.44■□□□□ 0.54
TRAF4-214ENST00000580073 WASHC2AQ641Q2 1341 aa18.44■□□□□ 0.54
TRAF4-214ENST00000580073 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.43■□□□□ 0.543e-6■□□□□ 10.9
TRAF4-214ENST00000580073 CYP27B1O15528 508 aa18.42■□□□□ 0.54
TRAF4-214ENST00000580073 CARD14Q9BXL6 1004 aa18.42■□□□□ 0.54
TRAF4-214ENST00000580073 COL5A3P25940 1745 aaPredicted RBP18.41■□□□□ 0.54
TRAF4-214ENST00000580073 NKX1-1Q15270 411 aaPredicted RBP18.41■□□□□ 0.54
TRAF4-214ENST00000580073 NLGN2Q8NFZ4 835 aa18.41■□□□□ 0.54
TRAF4-214ENST00000580073 CD2APQ9Y5K6 639 aa18.41■□□□□ 0.54
TRAF4-214ENST00000580073 KIF13BQ9NQT8 1826 aa18.4■□□□□ 0.54
TRAF4-214ENST00000580073 GIGYF1O75420 1035 aaPredicted RBP18.4■□□□□ 0.54
TRAF4-214ENST00000580073 TMOD3Q9NYL9 352 aa18.4■□□□□ 0.54
TRAF4-214ENST00000580073 SSFA2P28290 1259 aa18.39■□□□□ 0.53
TRAF4-214ENST00000580073 MSL1Q68DK7 614 aa18.39■□□□□ 0.53
TRAF4-214ENST00000580073 IFNL2Q8IZJ0 200 aa18.39■□□□□ 0.53
TRAF4-214ENST00000580073 C1QTNF8P60827 252 aa18.38■□□□□ 0.53
TRAF4-214ENST00000580073 VIRMAQ69YN4 1812 aaKnown RBP18.37■□□□□ 0.53
TRAF4-214ENST00000580073 SENP3-EIF4A1A0A087X0R7 540 aa18.37■□□□□ 0.53
TRAF4-214ENST00000580073 GOLGB1Q14789 3259 aaKnown RBP18.36■□□□□ 0.53
TRAF4-214ENST00000580073 LOC102724428A0A0B4J2F2 783 aa18.36■□□□□ 0.53
TRAF4-214ENST00000580073 SIK1P57059 783 aa18.36■□□□□ 0.53
TRAF4-214ENST00000580073 PIGBQ92521 554 aa18.36■□□□□ 0.53
TRAF4-214ENST00000580073 EYA1Q99502 592 aa18.36■□□□□ 0.53
TRAF4-214ENST00000580073 POLR3GLQ9BT43 218 aa18.36■□□□□ 0.53
TRAF4-214ENST00000580073 HSP90AB1P08238 724 aaKnown RBP18.35■□□□□ 0.53
TRAF4-214ENST00000580073 C4AP0C0L4 1744 aa18.35■□□□□ 0.53
TRAF4-214ENST00000580073 CICQ96RK0 1608 aaPredicted RBP18.34■□□□□ 0.53
TRAF4-214ENST00000580073 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP18.34■□□□□ 0.53
TRAF4-214ENST00000580073 PHF14O94880 888 aa18.34■□□□□ 0.53
TRAF4-214ENST00000580073 PHKG2P15735 406 aa18.34■□□□□ 0.53
TRAF4-214ENST00000580073 POLKQ9UBT6 870 aa18.34■□□□□ 0.53
TRAF4-214ENST00000580073 SCN11AQ9UI33 1791 aa18.34■□□□□ 0.53
TRAF4-214ENST00000580073 YBX3P16989 372 aaKnown RBP eCLIP18.33■□□□□ 0.525e-7■□□□□ 10.9
TRAF4-214ENST00000580073 EIF4G2P78344 907 aaKnown RBP eCLIP18.33■□□□□ 0.52
TRAF4-214ENST00000580073 IGSF1Q8N6C5 1336 aa18.31■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 8.1 ms