RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 RELBQ01201 579 aa12.86□□□□□ -0.35
SS18-214ENST00000580003 CYP2U1Q7Z449 544 aa12.86□□□□□ -0.35
SS18-214ENST00000580003 EML3Q32P44 896 aa12.85□□□□□ -0.35
SS18-214ENST00000580003 TBC1D9Q6ZT07 1266 aa12.85□□□□□ -0.35
SS18-214ENST00000580003 ZFP42Q96MM3 310 aa12.85□□□□□ -0.35
SS18-214ENST00000580003 GMPR2Q9P2T1 348 aaKnown RBP12.85□□□□□ -0.35
SS18-214ENST00000580003 USP17L5A8MUK1 530 aa12.84□□□□□ -0.35
SS18-214ENST00000580003 ATP5J2-PTCD1G3V325 749 aa12.84□□□□□ -0.35
SS18-214ENST00000580003 ATP9BO43861 1147 aa12.84□□□□□ -0.35
SS18-214ENST00000580003 KIFC2Q96AC6 838 aa12.84□□□□□ -0.35
SS18-214ENST00000580003 PTGIRP43119 386 aa12.83□□□□□ -0.36
SS18-214ENST00000580003 OSBPL3Q9H4L5 887 aa12.83□□□□□ -0.36
SS18-214ENST00000580003 TIMELESSQ9UNS1 1208 aa12.83□□□□□ -0.36
SS18-214ENST00000580003 TFIP11Q9UBB9 837 aaKnown RBP12.82□□□□□ -0.36
SS18-214ENST00000580003 NCOA4Q13772 614 aa12.81□□□□□ -0.36
SS18-214ENST00000580003 DEPDC4Q8N2C3 294 aa12.81□□□□□ -0.36
SS18-214ENST00000580003 PPP1R12CQ9BZL4 782 aa12.81□□□□□ -0.36
SS18-214ENST00000580003 ZNF395Q9H8N7 513 aaPredicted RBP12.81□□□□□ -0.36
SS18-214ENST00000580003 NOD1Q9Y239 953 aa12.81□□□□□ -0.36
SS18-214ENST00000580003 C11orf95C9JLR9 678 aaPredicted RBP12.8□□□□□ -0.36
SS18-214ENST00000580003 ZNF787Q6DD87 383 aa12.8□□□□□ -0.36
SS18-214ENST00000580003 PLEKHM2Q8IWE5 1019 aa12.8□□□□□ -0.36
SS18-214ENST00000580003 TRIM47Q96LD4 638 aa12.8□□□□□ -0.36
SS18-214ENST00000580003 USP17L3A6NCW0 530 aa12.79□□□□□ -0.36
SS18-214ENST00000580003 USP17L4A6NCW7 530 aa12.79□□□□□ -0.36
SS18-214ENST00000580003 PALM3A6NDB9 673 aaPredicted RBP12.79□□□□□ -0.36
SS18-214ENST00000580003 ARID3CA6NKF2 412 aa12.79□□□□□ -0.36
SS18-214ENST00000580003 SPINT1O43278 529 aa12.79□□□□□ -0.36
SS18-214ENST00000580003 USP17L2Q6R6M4 530 aa12.79□□□□□ -0.36
SS18-214ENST00000580003 USP17L1Q7RTZ2 530 aa12.79□□□□□ -0.36
SS18-214ENST00000580003 KDF1Q8NAX2 398 aaPredicted RBP12.78□□□□□ -0.36
SS18-214ENST00000580003 GNRH1P01148 92 aa12.77□□□□□ -0.37
SS18-214ENST00000580003 CCDC97Q96F63 343 aaPredicted RBP12.77□□□□□ -0.37
SS18-214ENST00000580003 INSM2Q96T92 566 aaPredicted RBP12.77□□□□□ -0.37
SS18-214ENST00000580003 POLMQ9NP87 494 aaPredicted RBP12.77□□□□□ -0.37
SS18-214ENST00000580003 MAFBQ9Y5Q3 323 aaPredicted RBP12.77□□□□□ -0.37
SS18-214ENST00000580003 POTECB2RU33 542 aa12.76□□□□□ -0.37
SS18-214ENST00000580003 TRIM50Q86XT4 487 aa12.76□□□□□ -0.37
SS18-214ENST00000580003 ARHGEF10LQ9HCE6 1279 aa12.76□□□□□ -0.37
SS18-214ENST00000580003 A0A1W2PRU2 124 aa12.75□□□□□ -0.37
SS18-214ENST00000580003 MEN1O00255 615 aa12.75□□□□□ -0.37
SS18-214ENST00000580003 NLRP3Q96P20 1036 aa12.75□□□□□ -0.37
SS18-214ENST00000580003 TTLL8A6PVC2 850 aa12.74□□□□□ -0.37
SS18-214ENST00000580003 LMOD1P29536 600 aaPredicted RBP12.74□□□□□ -0.37
SS18-214ENST00000580003 ESCO1Q5FWF5 840 aa12.74□□□□□ -0.37
SS18-214ENST00000580003 SOS2Q07890 1332 aaPredicted RBP12.73□□□□□ -0.37
SS18-214ENST00000580003 MAN1A2O60476 641 aa12.73□□□□□ -0.37
SS18-214ENST00000580003 SNRPBP14678 240 aaKnown RBP12.73□□□□□ -0.37
SS18-214ENST00000580003 GTF2IP78347 998 aa12.73□□□□□ -0.37
SS18-214ENST00000580003 PSME1Q06323 249 aa12.73□□□□□ -0.37
SS18-214ENST00000580003 RAB6BQ9NRW1 208 aa12.73□□□□□ -0.37
SS18-214ENST00000580003 MKRN1Q9UHC7 482 aaKnown RBP12.73□□□□□ -0.37
SS18-214ENST00000580003 SERPINA10Q9UK55 444 aa12.73□□□□□ -0.37
SS18-214ENST00000580003 CTSOP43234 321 aaPredicted RBP12.72□□□□□ -0.37
SS18-214ENST00000580003 ATP1A2P50993 1020 aa12.72□□□□□ -0.37
SS18-214ENST00000580003 CLN3Q13286 438 aa12.72□□□□□ -0.37
SS18-214ENST00000580003 PCDHGA11Q9Y5H2 935 aa12.7□□□□□ -0.38
SS18-214ENST00000580003 FIGNL2A6NMB9 653 aa12.69□□□□□ -0.38
SS18-214ENST00000580003 CFAP70Q5T0N1 1121 aa12.69□□□□□ -0.38
SS18-214ENST00000580003 CNKSR1Q969H4 720 aa12.69□□□□□ -0.38
SS18-214ENST00000580003 ESYT1Q9BSJ8 1104 aa12.69□□□□□ -0.38
SS18-214ENST00000580003 RFX1P22670 979 aa12.68□□□□□ -0.38
SS18-214ENST00000580003 GPC1P35052 558 aa12.68□□□□□ -0.38
SS18-214ENST00000580003 RNF144AP50876 292 aaPredicted RBP12.68□□□□□ -0.38
SS18-214ENST00000580003 GDF10P55107 478 aa12.68□□□□□ -0.38
SS18-214ENST00000580003 ETNK1Q9HBU6 452 aa12.68□□□□□ -0.38
SS18-214ENST00000580003 SUPT5HO00267 1087 aaKnown RBP12.67□□□□□ -0.38
SS18-214ENST00000580003 IL2RAP01589 272 aa12.67□□□□□ -0.38
SS18-214ENST00000580003 ZNF800Q2TB10 664 aaPredicted RBP eCLIP12.67□□□□□ -0.38
SS18-214ENST00000580003 SLC27A3Q5K4L6 730 aa12.67□□□□□ -0.38
SS18-214ENST00000580003 OGFOD1Q8N543 542 aa12.67□□□□□ -0.38
SS18-214ENST00000580003 XAGE2Q96GT9 111 aa12.67□□□□□ -0.38
SS18-214ENST00000580003 VRTNQ9H8Y1 702 aa12.67□□□□□ -0.38
SS18-214ENST00000580003 DNAAF2Q9NVR5 837 aaKnown RBP12.67□□□□□ -0.38
SS18-214ENST00000580003 DNMT3LQ9UJW3 386 aa12.67□□□□□ -0.38
SS18-214ENST00000580003 SOBPA7XYQ1 873 aa12.66□□□□□ -0.38
SS18-214ENST00000580003 STAU1O95793 577 aaKnown RBP12.66□□□□□ -0.38
SS18-214ENST00000580003 RASA1P20936 1047 aa12.66□□□□□ -0.38
SS18-214ENST00000580003 FOXD4L5Q5VV16 416 aaPredicted RBP12.66□□□□□ -0.38
SS18-214ENST00000580003 LARP1Q6PKG0 1096 aaKnown RBP12.66□□□□□ -0.38
SS18-214ENST00000580003 CCDC82Q8N4S0 544 aa12.66□□□□□ -0.38
SS18-214ENST00000580003 RNF217Q8TC41 542 aa12.66□□□□□ -0.38
SS18-214ENST00000580003 RBM19Q9Y4C8 960 aaKnown RBP12.66□□□□□ -0.38
SS18-214ENST00000580003 INHAP05111 366 aa12.65□□□□□ -0.38
SS18-214ENST00000580003 SCNN1DP51172 638 aa12.65□□□□□ -0.38
SS18-214ENST00000580003 C1orf115Q9H7X2 142 aa12.65□□□□□ -0.38
SS18-214ENST00000580003 GTF2E1P29083 439 aaPredicted RBP12.64□□□□□ -0.39
SS18-214ENST00000580003 CLDN10P78369 228 aa12.64□□□□□ -0.39
SS18-214ENST00000580003 CENPCQ03188 943 aa12.64□□□□□ -0.39
SS18-214ENST00000580003 KANK4Q5T7N3 995 aaPredicted RBP12.64□□□□□ -0.39
SS18-214ENST00000580003 LYSMD3Q7Z3D4 306 aa12.64□□□□□ -0.39
SS18-214ENST00000580003 LARGE2Q8N3Y3 721 aa12.64□□□□□ -0.39
SS18-214ENST00000580003 WASLO00401 505 aaPredicted RBP12.63□□□□□ -0.39
SS18-214ENST00000580003 CCDC102BQ68D86 513 aa12.63□□□□□ -0.39
SS18-214ENST00000580003 TPCN2Q8NHX9 752 aa12.63□□□□□ -0.39
SS18-214ENST00000580003 BACH1O14867 736 aa12.62□□□□□ -0.39
SS18-214ENST00000580003 ZBTB7BO15156 539 aaPredicted RBP12.62□□□□□ -0.39
SS18-214ENST00000580003 TLR1Q15399 786 aa12.62□□□□□ -0.39
SS18-214ENST00000580003 ZNF594Q96JF6 807 aaPredicted RBP12.62□□□□□ -0.39
SS18-214ENST00000580003 SERTAD1Q9UHV2 236 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms