RNA–Protein interactions for RNA: ENST00000577300.1

SMCHD1-202, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 506 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-202ENST00000577300 SENP3-EIF4A1A0A087X0R7 540 aa11.12□□□□□ -0.63
SMCHD1-202ENST00000577300 GPC1P35052 558 aa11.12□□□□□ -0.63
SMCHD1-202ENST00000577300 LYSMD3Q7Z3D4 306 aa11.12□□□□□ -0.63
SMCHD1-202ENST00000577300 GPR161Q8N6U8 529 aaKnown RBP11.12□□□□□ -0.63
SMCHD1-202ENST00000577300 PCDHB11Q9Y5F2 797 aa11.12□□□□□ -0.63
SMCHD1-202ENST00000577300 SCTRP47872 440 aa11.11□□□□□ -0.63
SMCHD1-202ENST00000577300 CYP2U1Q7Z449 544 aa11.11□□□□□ -0.63
SMCHD1-202ENST00000577300 CEP126Q9P2H0 1117 aa11.11□□□□□ -0.63
SMCHD1-202ENST00000577300 TRAK2O60296 914 aa11.1□□□□□ -0.63
SMCHD1-202ENST00000577300 IRF5Q13568 498 aa11.1□□□□□ -0.63
SMCHD1-202ENST00000577300 A0A1W2PRU2 124 aa11.09□□□□□ -0.63
SMCHD1-202ENST00000577300 OSBPL3Q9H4L5 887 aa11.09□□□□□ -0.63
SMCHD1-202ENST00000577300 MEN1O00255 615 aa11.08□□□□□ -0.64
SMCHD1-202ENST00000577300 EIF4G2P78344 907 aaKnown RBP eCLIP11.08□□□□□ -0.64
SMCHD1-202ENST00000577300 KRT76Q01546 638 aa11.07□□□□□ -0.64
SMCHD1-202ENST00000577300 CLN3Q13286 438 aa11.07□□□□□ -0.64
SMCHD1-202ENST00000577300 SV2AQ7L0J3 742 aa11.06□□□□□ -0.64
SMCHD1-202ENST00000577300 PRICKLE2Q7Z3G6 844 aa11.06□□□□□ -0.64
SMCHD1-202ENST00000577300 VWA5B2Q8N398 1253 aa11.06□□□□□ -0.64
SMCHD1-202ENST00000577300 CCDC85AQ96PX6 553 aaPredicted RBP11.06□□□□□ -0.64
SMCHD1-202ENST00000577300 ESF1Q9H501 851 aaKnown RBP11.06□□□□□ -0.64
SMCHD1-202ENST00000577300 NLRP3Q96P20 1036 aa11.05□□□□□ -0.64
SMCHD1-202ENST00000577300 COL25A1Q9BXS0 654 aaPredicted RBP11.05□□□□□ -0.64
SMCHD1-202ENST00000577300 CDC14CA4D256 554 aa11.04□□□□□ -0.64
SMCHD1-202ENST00000577300 MCM6Q14566 821 aa11.04□□□□□ -0.64
SMCHD1-202ENST00000577300 PHTF2Q8N3S3 785 aa11.04□□□□□ -0.64
SMCHD1-202ENST00000577300 CNTNAP3BQ96NU0 1288 aa11.04□□□□□ -0.64
SMCHD1-202ENST00000577300 CNTNAP3Q9BZ76 1288 aa11.04□□□□□ -0.64
SMCHD1-202ENST00000577300 GDPD2Q9HCC8 539 aa11.04□□□□□ -0.64
SMCHD1-202ENST00000577300 GNRH1P01148 92 aa11.03□□□□□ -0.64
SMCHD1-202ENST00000577300 RHOQP17081 205 aa11.03□□□□□ -0.64
SMCHD1-202ENST00000577300 CDCA7Q9BWT1 371 aaPredicted RBP11.03□□□□□ -0.64
SMCHD1-202ENST00000577300 GRIP2Q9C0E4 1043 aa11.03□□□□□ -0.64
SMCHD1-202ENST00000577300 ARHGEF10LQ9HCE6 1279 aa11.03□□□□□ -0.64
SMCHD1-202ENST00000577300 MYCP01106 439 aaPredicted RBP11.02□□□□□ -0.65
SMCHD1-202ENST00000577300 WASHC4Q2M389 1173 aa11.02□□□□□ -0.65
SMCHD1-202ENST00000577300 SLC27A3Q5K4L6 730 aa11.02□□□□□ -0.65
SMCHD1-202ENST00000577300 SPATA31C2B4DYI2 1134 aa11.01□□□□□ -0.65
SMCHD1-202ENST00000577300 ABL2P42684 1182 aa11.01□□□□□ -0.65
SMCHD1-202ENST00000577300 VAC14Q08AM6 782 aa11.01□□□□□ -0.65
SMCHD1-202ENST00000577300 RNFT1Q5M7Z0 435 aa11.01□□□□□ -0.65
SMCHD1-202ENST00000577300 GMCL1Q96IK5 515 aa11.01□□□□□ -0.65
SMCHD1-202ENST00000577300 SLFNL1Q499Z3 407 aa11□□□□□ -0.65
SMCHD1-202ENST00000577300 WDR44Q5JSH3 913 aa11□□□□□ -0.65
SMCHD1-202ENST00000577300 CUEDC1Q9NWM3 386 aaPredicted RBP11□□□□□ -0.65
SMCHD1-202ENST00000577300 CHIC2Q9UKJ5 165 aa11□□□□□ -0.65
SMCHD1-202ENST00000577300 ESYT1Q9BSJ8 1104 aa10.99□□□□□ -0.65
SMCHD1-202ENST00000577300 DOLKQ9UPQ8 538 aa10.99□□□□□ -0.65
SMCHD1-202ENST00000577300 DYRK1BQ9Y463 629 aa10.99□□□□□ -0.65
SMCHD1-202ENST00000577300 POU4F2Q12837 409 aa10.98□□□□□ -0.65
SMCHD1-202ENST00000577300 USP4Q13107 963 aa10.98□□□□□ -0.65
SMCHD1-202ENST00000577300 TSGA10IPQ3SY00 556 aa10.98□□□□□ -0.65
SMCHD1-202ENST00000577300 RNF135Q8IUD6 432 aa10.98□□□□□ -0.65
SMCHD1-202ENST00000577300 CNKSR1Q969H4 720 aa10.98□□□□□ -0.65
SMCHD1-202ENST00000577300 RAB6BQ9NRW1 208 aa10.98□□□□□ -0.65
SMCHD1-202ENST00000577300 IL2RAP01589 272 aa10.97□□□□□ -0.65
SMCHD1-202ENST00000577300 NBPF10Q6P3W6 841 aaKnown RBP10.97□□□□□ -0.65
SMCHD1-202ENST00000577300 TRIM22Q8IYM9 498 aa10.97□□□□□ -0.65
SMCHD1-202ENST00000577300 NBPF15Q8N660 670 aa10.97□□□□□ -0.65
SMCHD1-202ENST00000577300 HRH3Q9Y5N1 445 aa10.97□□□□□ -0.65
SMCHD1-202ENST00000577300 SLURP2P0DP57 97 aa10.96□□□□□ -0.65
SMCHD1-202ENST00000577300 SOX11P35716 441 aa10.96□□□□□ -0.65
SMCHD1-202ENST00000577300 ZNF837Q96EG3 531 aaPredicted RBP10.96□□□□□ -0.65
SMCHD1-202ENST00000577300 XAGE2Q96GT9 111 aa10.96□□□□□ -0.65
SMCHD1-202ENST00000577300 CENPCQ03188 943 aa10.95□□□□□ -0.66
SMCHD1-202ENST00000577300 TAS1R3Q7RTX0 852 aa10.95□□□□□ -0.66
SMCHD1-202ENST00000577300 SIRT1Q96EB6 747 aa10.95□□□□□ -0.66
SMCHD1-202ENST00000577300 COG6Q9Y2V7 657 aa10.95□□□□□ -0.66
SMCHD1-202ENST00000577300 WASLO00401 505 aaPredicted RBP10.94□□□□□ -0.66
SMCHD1-202ENST00000577300 ESCO1Q5FWF5 840 aa10.94□□□□□ -0.66
SMCHD1-202ENST00000577300 H7C1W4 665 aa10.93□□□□□ -0.66
SMCHD1-202ENST00000577300 SEMA3FQ13275 785 aa10.93□□□□□ -0.66
SMCHD1-202ENST00000577300 DBN1Q16643 649 aa10.93□□□□□ -0.66
SMCHD1-202ENST00000577300 MAP7D1Q3KQU3 841 aa10.93□□□□□ -0.66
SMCHD1-202ENST00000577300 GAS6Q14393 721 aa10.92□□□□□ -0.66
SMCHD1-202ENST00000577300 ZNF385CQ66K41 422 aaPredicted RBP10.92□□□□□ -0.66
SMCHD1-202ENST00000577300 RIPOR1Q6ZS17 1223 aa10.92□□□□□ -0.66
SMCHD1-202ENST00000577300 ZSCAN10Q96SZ4 725 aaPredicted RBP10.92□□□□□ -0.66
SMCHD1-202ENST00000577300 GAS2L1Q99501 681 aaPredicted RBP10.92□□□□□ -0.66
SMCHD1-202ENST00000577300 FHDC1Q9C0D6 1143 aaPredicted RBP10.92□□□□□ -0.66
SMCHD1-202ENST00000577300 TIMMDC1Q9NPL8 285 aa10.92□□□□□ -0.66
SMCHD1-202ENST00000577300 SRSF11Q05519 484 aaKnown RBP10.91□□□□□ -0.66
SMCHD1-202ENST00000577300 OXLD1Q5BKU9 147 aa10.91□□□□□ -0.66
SMCHD1-202ENST00000577300 FOXR1Q6PIV2 292 aa10.91□□□□□ -0.66
SMCHD1-202ENST00000577300 PLPP7Q8NBV4 271 aa10.9□□□□□ -0.66
SMCHD1-202ENST00000577300 ETNK1Q9HBU6 452 aa10.9□□□□□ -0.66
SMCHD1-202ENST00000577300 ADAMTS2O95450 1211 aa10.89□□□□□ -0.67
SMCHD1-202ENST00000577300 F11P03951 625 aa10.89□□□□□ -0.67
SMCHD1-202ENST00000577300 GTF2E1P29083 439 aaPredicted RBP10.88□□□□□ -0.67
SMCHD1-202ENST00000577300 SVOPQ8N4V2 548 aa10.88□□□□□ -0.67
SMCHD1-202ENST00000577300 WHAMMQ8TF30 809 aa10.88□□□□□ -0.67
SMCHD1-202ENST00000577300 MBIPQ9NS73 344 aa10.88□□□□□ -0.67
SMCHD1-202ENST00000577300 ADAMTS8Q9UP79 889 aa10.88□□□□□ -0.67
SMCHD1-202ENST00000577300 GNASQ5JWF2 1037 aa10.87□□□□□ -0.67
SMCHD1-202ENST00000577300 A0A1B0GTH6 734 aa10.86□□□□□ -0.67
SMCHD1-202ENST00000577300 GPR25O00155 361 aa10.86□□□□□ -0.67
SMCHD1-202ENST00000577300 ARHGEF15O94989 841 aa10.86□□□□□ -0.67
SMCHD1-202ENST00000577300 KCNMA1Q12791 1236 aa10.86□□□□□ -0.67
SMCHD1-202ENST00000577300 FLIIQ13045 1269 aa10.86□□□□□ -0.67
SMCHD1-202ENST00000577300 TMEM214Q6NUQ4 689 aaKnown RBP10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms