RNA–Protein interactions for RNA: ENST00000576708.5

NUP88-212, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 800 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-212ENST00000576708 LRRC59Q96AG4 307 aaKnown RBP9.26□□□□□ -0.93
NUP88-212ENST00000576708 AK7Q96M32 723 aa9.26□□□□□ -0.93
NUP88-212ENST00000576708 ZBED2Q9BTP6 218 aa9.26□□□□□ -0.93
NUP88-212ENST00000576708 AFF2P51816 1311 aa9.26□□□□□ -0.93
NUP88-212ENST00000576708 SPATA31E1Q6ZUB1 1445 aa9.25□□□□□ -0.93
NUP88-212ENST00000576708 TRIM6-TRIM34B2RNG4 842 aa9.25□□□□□ -0.93
NUP88-212ENST00000576708 C3orf80F5H4A9 247 aa9.25□□□□□ -0.93
NUP88-212ENST00000576708 ADAMTS2O95450 1211 aa9.25□□□□□ -0.93
NUP88-212ENST00000576708 TTC13Q8NBP0 860 aa9.25□□□□□ -0.93
NUP88-212ENST00000576708 C8orf37Q96NL8 207 aa9.25□□□□□ -0.93
NUP88-212ENST00000576708 RXRBP28702 533 aa9.24□□□□□ -0.93
NUP88-212ENST00000576708 RBM27Q9P2N5 1060 aaKnown RBP9.24□□□□□ -0.93
NUP88-212ENST00000576708 PLEKHH1Q9ULM0 1364 aa9.24□□□□□ -0.93
NUP88-212ENST00000576708 PRAG1Q86YV5 1406 aa9.23□□□□□ -0.93
NUP88-212ENST00000576708 SMAPO00193 183 aa9.23□□□□□ -0.93
NUP88-212ENST00000576708 XPCQ01831 940 aaPredicted RBP9.23□□□□□ -0.93
NUP88-212ENST00000576708 ESCO1Q5FWF5 840 aa9.23□□□□□ -0.93
NUP88-212ENST00000576708 KIAA1468Q9P260 1216 aa9.23□□□□□ -0.93
NUP88-212ENST00000576708 ADGRG1Q9Y653 693 aa9.23□□□□□ -0.93
NUP88-212ENST00000576708 SOS2Q07890 1332 aaPredicted RBP9.23□□□□□ -0.93
NUP88-212ENST00000576708 TRIM66O15016 1216 aa9.22□□□□□ -0.93
NUP88-212ENST00000576708 LSM11P83369 360 aaKnown RBP eCLIP9.22□□□□□ -0.93
NUP88-212ENST00000576708 ANKRD13DQ6ZTN6 518 aa9.22□□□□□ -0.93
NUP88-212ENST00000576708 PACS2Q86VP3 889 aa9.22□□□□□ -0.93
NUP88-212ENST00000576708 NLRP7Q8WX94 980 aa9.22□□□□□ -0.93
NUP88-212ENST00000576708 QTRT2Q9H974 415 aaKnown RBP9.22□□□□□ -0.93
NUP88-212ENST00000576708 VPS9D1Q9Y2B5 631 aa9.22□□□□□ -0.93
NUP88-212ENST00000576708 LRPPRCP42704 1394 aaKnown RBP9.22□□□□□ -0.93
NUP88-212ENST00000576708 IFT172Q9UG01 1749 aa9.22□□□□□ -0.93
NUP88-212ENST00000576708 CFAP70Q5T0N1 1121 aa9.21□□□□□ -0.94
NUP88-212ENST00000576708 NUDT18Q6ZVK8 323 aa9.21□□□□□ -0.94
NUP88-212ENST00000576708 NGLY1Q96IV0 654 aa9.21□□□□□ -0.94
NUP88-212ENST00000576708 PHOX2BQ99453 314 aa9.21□□□□□ -0.94
NUP88-212ENST00000576708 PNMA3Q9UL41 463 aa9.21□□□□□ -0.94
NUP88-212ENST00000576708 ANKRD30BQ9BXX2 1392 aa9.21□□□□□ -0.94
NUP88-212ENST00000576708 LAMC1P11047 1609 aa9.2□□□□□ -0.94
NUP88-212ENST00000576708 FOXO3O43524 673 aa9.2□□□□□ -0.94
NUP88-212ENST00000576708 TATDN2Q93075 761 aa9.2□□□□□ -0.94
NUP88-212ENST00000576708 ABCC11Q96J66 1382 aa9.2□□□□□ -0.94
NUP88-212ENST00000576708 RAB3GAP2Q9H2M9 1393 aa9.2□□□□□ -0.94
NUP88-212ENST00000576708 PIK3C2GO75747 1445 aa9.2□□□□□ -0.94
NUP88-212ENST00000576708 CDC42BPGQ6DT37 1551 aa9.2□□□□□ -0.94
NUP88-212ENST00000576708 METTL3Q86U44 580 aaKnown RBP9.19□□□□□ -0.94
NUP88-212ENST00000576708 SLC4A5Q9BY07 1137 aa9.19□□□□□ -0.94
NUP88-212ENST00000576708 C14orf93Q9H972 538 aaKnown RBP9.19□□□□□ -0.94
NUP88-212ENST00000576708 SEPT9Q9UHD8 586 aaPredicted RBP9.19□□□□□ -0.94
NUP88-212ENST00000576708 TECPR2O15040 1411 aa9.19□□□□□ -0.94
NUP88-212ENST00000576708 YTHDC2Q9H6S0 1430 aaKnown RBP9.19□□□□□ -0.94
NUP88-212ENST00000576708 NBPF26B4DH59 902 aa9.18□□□□□ -0.94
NUP88-212ENST00000576708 RGS12O14924 1447 aa9.18□□□□□ -0.94
NUP88-212ENST00000576708 RBM6P78332 1123 aaKnown RBP9.18□□□□□ -0.94
NUP88-212ENST00000576708 SAFB2Q14151 953 aaKnown RBP eCLIP9.18□□□□□ -0.94
NUP88-212ENST00000576708 PXYLP1Q8TE99 480 aa9.18□□□□□ -0.94
NUP88-212ENST00000576708 PXDNQ92626 1479 aa9.18□□□□□ -0.94
NUP88-212ENST00000576708 RABGEF1Q9UJ41 708 aa9.18□□□□□ -0.94
NUP88-212ENST00000576708 USP21Q9UK80 565 aa9.18□□□□□ -0.94
NUP88-212ENST00000576708 NPHP3Q7Z494 1330 aa9.17□□□□□ -0.94
NUP88-212ENST00000576708 ONECUT3O60422 494 aaPredicted RBP9.17□□□□□ -0.94
NUP88-212ENST00000576708 OATP04181 439 aa9.17□□□□□ -0.94
NUP88-212ENST00000576708 PDE4DQ08499 809 aa9.17□□□□□ -0.94
NUP88-212ENST00000576708 NEUROD2Q15784 382 aa9.17□□□□□ -0.94
NUP88-212ENST00000576708 ADGRD1Q6QNK2 874 aa9.17□□□□□ -0.94
NUP88-212ENST00000576708 RBM46Q8TBY0 533 aaKnown RBP9.17□□□□□ -0.94
NUP88-212ENST00000576708 EYA1Q99502 592 aa9.17□□□□□ -0.94
NUP88-212ENST00000576708 KNDC1Q76NI1 1749 aa9.17□□□□□ -0.94
NUP88-212ENST00000576708 CDK12Q9NYV4 1490 aaPredicted RBP9.16□□□□□ -0.94
NUP88-212ENST00000576708 NRXN1Q9ULB1 1477 aa9.16□□□□□ -0.94
NUP88-212ENST00000576708 BRPF1P55201 1214 aaPredicted RBP9.16□□□□□ -0.94
NUP88-212ENST00000576708 PRAM1Q96QH2 718 aa9.16□□□□□ -0.94
NUP88-212ENST00000576708 GPBP1L1Q9HC44 474 aaPredicted RBP9.16□□□□□ -0.94
NUP88-212ENST00000576708 FMN2Q9NZ56 1722 aa9.16□□□□□ -0.94
NUP88-212ENST00000576708 COL22A1Q8NFW1 1626 aaPredicted RBP9.16□□□□□ -0.94
NUP88-212ENST00000576708 MYOM2P54296 1465 aa9.15□□□□□ -0.94
NUP88-212ENST00000576708 DHX57Q6P158 1386 aaKnown RBP9.15□□□□□ -0.94
NUP88-212ENST00000576708 TK2O00142 265 aa9.15□□□□□ -0.94
NUP88-212ENST00000576708 MDM2Q00987 491 aaPredicted RBP9.15□□□□□ -0.94
NUP88-212ENST00000576708 TTLL12Q14166 644 aaPredicted RBP9.15□□□□□ -0.94
NUP88-212ENST00000576708 KRT28Q7Z3Y7 464 aa9.15□□□□□ -0.94
NUP88-212ENST00000576708 FNBP4Q8N3X1 1017 aaPredicted RBP9.15□□□□□ -0.94
NUP88-212ENST00000576708 RNF166Q96A37 237 aaPredicted RBP9.15□□□□□ -0.94
NUP88-212ENST00000576708 SIRT1Q96EB6 747 aa9.15□□□□□ -0.94
NUP88-212ENST00000576708 RCCD1A6NED2 376 aa9.14□□□□□ -0.95
NUP88-212ENST00000576708 REPIN1Q9BWE0 567 aaKnown RBP9.14□□□□□ -0.95
NUP88-212ENST00000576708 TRPC5Q9UL62 973 aaPredicted RBP9.14□□□□□ -0.95
NUP88-212ENST00000576708 TRAK1Q9UPV9 953 aa9.14□□□□□ -0.95
NUP88-212ENST00000576708 ATRNO75882 1429 aa9.14□□□□□ -0.95
NUP88-212ENST00000576708 SPATA31A3Q5VYP0 1347 aa9.13□□□□□ -0.95
NUP88-212ENST00000576708 BHMG1C9JSJ3 638 aaPredicted RBP9.13□□□□□ -0.95
NUP88-212ENST00000576708 AMHR2Q16671 573 aa9.13□□□□□ -0.95
NUP88-212ENST00000576708 PMFBP1Q8TBY8 1022 aa9.13□□□□□ -0.95
NUP88-212ENST00000576708 CABLES1Q8TDN4 633 aa9.13□□□□□ -0.95
NUP88-212ENST00000576708 DCAF11Q8TEB1 546 aa9.13□□□□□ -0.95
NUP88-212ENST00000576708 HIRIP3Q9BW71 556 aaPredicted RBP9.13□□□□□ -0.95
NUP88-212ENST00000576708 POGKQ9P215 609 aa9.13□□□□□ -0.95
NUP88-212ENST00000576708 RGPD8O14715 1765 aaPredicted RBP9.13□□□□□ -0.95
NUP88-212ENST00000576708 BCL9LQ86UU0 1499 aa9.13□□□□□ -0.95
NUP88-212ENST00000576708 HRO43593 1189 aa9.12□□□□□ -0.95
NUP88-212ENST00000576708 PARP9Q8IXQ6 854 aa9.12□□□□□ -0.95
NUP88-212ENST00000576708 ADGRB1O14514 1584 aa9.12□□□□□ -0.95
NUP88-212ENST00000576708 ACIN1Q9UKV3 1341 aaKnown RBP9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms